Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011277

Physical Location & Seq

Genomic Coordinates Reverse (-)

15373597 .. 15377137

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1174800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCCTCCGTGCTCGGCGGAACACGGCGGCGTATCCAGAGCTTCGTCAACTGTCGTCCTCTTCCTGCTACTCTTCTCAGTCCTGGCCACCATTTCCACTGCTTGCTCCAACGGCAATTGCCAGGTTCTAGATGCTTGTGCGGCGGCGACGGACTGCGGGCCGGGTCTTTACTGTGGCAACTGCCCTGCTTCCGGTAAGAATCAGCCCGTTTGCACCAGAGGCCAAGCAATCGTACCCACTTCAATTATTAATGGGTTGCCATTCAACAAGTACACATGGTTGGCGACTCATAATTCTTTCAGCATCGTTGATGCACCGCCCGTGGCTGGTGTTCAAAGACTCACATTTTACAACCAAGAGGACACTGTTACTAACCAGTTGAGGAATGGAGTGAGAGGGCTGATGTTGGATATGTACGATTTTGAGAATGATATCTGGCTTTGTCATTCCTTTAAGGGGCAATGTTTCAACTTCACTGCATTTCAACCTGCAATTAACACTTTGACGGAAGTGGAAACATTTTTAAGTCAGAACCCAACAGAGATTGTGACCATTATAATTGAGGACTACGTGAAAACTCCAAAGGGGTTAACGACATTGTTTACCAATGCTGGGTTAGATAAGTATTGGTTTCCTGTAGCGAAAATGCCAAGAAAGGGTGAAGATTGGCCCACTGTTACTGAGATGGTGCAAGAGAATCACCGGCTTCTTGTTTTTACGTCTGATGCTTCAAAGGAAGCACAGGAAGGAGTAGCTTACCAGTGGAAATACATGGTGGAAAACGAAGCTGGAGATCCTGGGGTAAAACCAGGTTCATGCCCGAAGAGAAAAGAATCAAAGCCTCTGAATTCAAAAAGTGCATCTCTTTTCTTTCAAAATTATTTCTCAACATATCCTGTTGAAGCTGAAGCTTGCGAAGAGCATTCAAGTCCACTGGAGCAGATGATCGGTACCTGTTATAAAGCTGCAGGGGTGATGCCGAATTTTTTGGCAGTCAACTTTTACATGAGGAGTGATGGAGGAGGTGTGTTTGATGCTGTTGATAGAATGAATGGTCCAGTGCTTTGCGGGTGTAGTACTGTCAGTGCCTGCCAGGCTGGAGCACCTTCTGGATCTTGCAAGAATATTTCTGTACCAACTAGAAGTCCAGTGACCAACAATGCAGGAAGCTTTACCGGCTCTGTTCAGTTTTCAAAGTCTGCTTCAACAGTCTATTCTGCAAATCGCTTGGTTGTCTTCTTGTTTTATCTTCCGTTGATGGTATTTTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

425

Amino Acids

46.11

Weight (kDa)

5.64

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	75 - 365	1.4e-151	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	109 - 287	5.8e-19	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67130
fragaria_vesca	FvH4_1g16250 FvH4_1g16250 FvH4_1g16250
malus_domestica	MD02G1174800.v1.1 MD15G1285800.v1.1
prunus_persica	Prupe.7G131000_v2.0.a1
pyrus_communis	pycom02g14120 pycom15g24890
rosa_chinensis	RchiOBHm_Chr2g0105961
rosa_laevigata	RLG00000017473
rosa_multiflora	Rmu_sc0004367.1_g000025
rosa_roxburghii	Rroxscaffold_2G00137520 Rroxscaffold_2G00137670
rosa_rugosa	Rorug02G0132600
rosa_samantha	Rh2AG182900 Rh2BG193100 Rh2CG187400 Rh2DG189400
rosa_wichuraiana	Rw2G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	557, 960
Acc36I	ACCTGC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	950
AccB1I	GGYRCC	1 cut(s)	950
AciI	CCGC	7 cut(s)	17, 27, 140, 143, 156, 317, 1068
AclWI	GGATC	2 cut(s)	788, 1120
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	847, 982
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	6 cut(s)	234, 272, 416, 952, 1078, 1134
AfiI	CCNNNNNNNGG	5 cut(s)	191, 326, 456, 612, 656
AjnI	CCWGG	5 cut(s)	81, 120, 796, 808, 1092
AluBI	AGCT	7 cut(s)	41, 755, 788, 905, 911, 965, 1170
AluI	AGCT	7 cut(s)	41, 755, 788, 905, 911, 965, 1170
Alw21I	GWGCWC	2 cut(s)	14, 1105
AlwI	GGATC	2 cut(s)	788, 1120
AlwNI	CAGNNNCTG	1 cut(s)	1089
AoxI	GGCC	4 cut(s)	84, 158, 220, 668
ApeKI	GCWGC	1 cut(s)	965
ApoI	RAATTY	2 cut(s)	847, 982
AseI	ATTAAT	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	950
AspS9I	GGNCC	3 cut(s)	158, 669, 1055
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	671, 692, 985
AvaII	GGWCC	1 cut(s)	1055
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	1228
Bbv12I	GWGCWC	2 cut(s)	14, 1105
BbvI	GCAGC	1 cut(s)	952
BccI	CCATC	3 cut(s)	679, 1010, 1252
BceAI	ACGGC	2 cut(s)	40, 127
BciT130I	CCWGG	5 cut(s)	83, 122, 798, 810, 1094
BciVI	GTATCC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	2 cut(s)	128, 1140
BfmI	CTRYAG	2 cut(s)	636, 966
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	1094
BisI	GCNGC	4 cut(s)	28, 141, 144, 966
BlsI	GCNGC	4 cut(s)	29, 142, 145, 967
BmcAI	AGTACT	1 cut(s)	1078
Bme1390I	CCNGG	6 cut(s)	83, 122, 162, 798, 810, 1094
Bme18I	GGWCC	1 cut(s)	1055
BmgT120I	GGNCC	3 cut(s)	158, 669, 1055
BmiI	GGNNCC	1 cut(s)	952
BmrFI	CCNGG	6 cut(s)	83, 122, 162, 798, 810, 1094
BmsI	GCATC	7 cut(s)	121, 301, 312, 715, 869, 966, 1024
BpiI	GAAGAC	1 cut(s)	1228
BpmI	CTGGAG	3 cut(s)	810, 956, 1119
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	321, 797
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bsc4I	CCNNNNNNNGG	5 cut(s)	191, 326, 456, 612, 656
Bse118I	RCCGGY	2 cut(s)	702, 1175
Bse1I	ACTGG	5 cut(s)	376, 760, 939, 1058, 1148
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	5 cut(s)	83, 122, 798, 810, 1094
BseDI	CCNNGG	2 cut(s)	321, 797
BseLI	CCNNNNNNNGG	5 cut(s)	191, 326, 456, 612, 656
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	90, 672
BseNI	ACTGG	5 cut(s)	376, 760, 939, 1058, 1148
BseRI	GAGGAG	2 cut(s)	1024, 1035
BseXI	GCAGC	1 cut(s)	952
BseYI	CCCAGC	1 cut(s)	611
BshFI	GGCC	4 cut(s)	86, 160, 222, 670
BshNI	GGYRCC	1 cut(s)	950
BsiHKAI	GWGCWC	2 cut(s)	14, 1105
BsiSI	CCGG	4 cut(s)	161, 192, 703, 1176
BslI	CCNNNNNNNGG	5 cut(s)	191, 326, 456, 612, 656
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	4 cut(s)	86, 160, 222, 670
Bsp1286I	GDGCHC	2 cut(s)	14, 1105
Bsp143I	GATC	3 cut(s)	793, 945, 1112
BspACI	CCGC	7 cut(s)	17, 27, 140, 143, 156, 317, 1068
BspANI	GGCC	4 cut(s)	86, 160, 222, 670
BspCNI	CTCAG	2 cut(s)	89, 673
BspLI	GGNNCC	1 cut(s)	952
BspMAI	CTGCAG	1 cut(s)	970
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	788, 1120
BspQI	GCTCTTC	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	467
BsrFI	RCCGGY	2 cut(s)	702, 1175
BsrI	ACTGG	5 cut(s)	376, 760, 939, 1058, 1148
BssAI	RCCGGY	2 cut(s)	702, 1175
BssECI	CCNNGG	2 cut(s)	321, 797
BssMI	GATC	3 cut(s)	793, 945, 1112
Bst2UI	CCWGG	5 cut(s)	83, 122, 798, 810, 1094
Bst4CI	ACNGT	6 cut(s)	52, 173, 367, 676, 1081, 1210
Bst6I	CTCTTC	4 cut(s)	65, 77, 818, 912
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	4 cut(s)	103, 158, 913, 1090
BstDEI	CTNAG	2 cut(s)	76, 681
BstDSI	CCRYGG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	796, 948, 1115
BstMBI	GATC	3 cut(s)	793, 945, 1112
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 140, 219, 1094, 1176
BstNI	CCWGG	5 cut(s)	83, 122, 798, 810, 1094
BstSCI	CCNGG	6 cut(s)	81, 120, 160, 796, 808, 1092
BstSFI	CTRYAG	2 cut(s)	636, 966
BstV1I	GCAGC	1 cut(s)	952
BstV2I	GAAGAC	1 cut(s)	1228
BstX2I	RGATCY	2 cut(s)	793, 1112
BstYI	RGATCY	2 cut(s)	793, 1112
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	86, 160, 222, 670
BtgI	CCRYGG	1 cut(s)	321
BtsI	GCAGTG	2 cut(s)	96, 474
BtsIMutI	CAGTG	9 cut(s)	96, 363, 474, 672, 767, 932, 1065, 1090, 1155
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	4 cut(s)	103, 158, 913, 1090
CaiI	CAGNNNCTG	1 cut(s)	1089
Cfr10I	RCCGGY	2 cut(s)	702, 1175
Cfr13I	GGNCC	3 cut(s)	158, 669, 1055
CsiI	ACCWGGT	1 cut(s)	808
Csp6I	GTAC	6 cut(s)	233, 271, 415, 951, 1077, 1133
CviAII	CATG	4 cut(s)	276, 772, 816, 1006
CviQI	GTAC	6 cut(s)	233, 271, 415, 951, 1077, 1133
DdeI	CTNAG	2 cut(s)	76, 681
DpnI	GATC	3 cut(s)	795, 947, 1114
DpnII	GATC	3 cut(s)	793, 945, 1112
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	4 cut(s)	65, 77, 818, 912
EarI	CTCTTC	4 cut(s)	65, 77, 818, 912
EciI	GGCGGA	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	1055
Eco57I	CTGAAG	1 cut(s)	927
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	5 cut(s)	81, 120, 796, 808, 1092
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	4 cut(s)	279, 775, 819, 1009
FatI	CATG	4 cut(s)	275, 771, 815, 1005
FauI	CCCGC	2 cut(s)	149, 1061
Fnu4HI	GCNGC	4 cut(s)	28, 141, 144, 966
Fsp4HI	GCNGC	4 cut(s)	28, 141, 144, 966
FspBI	CTAG	2 cut(s)	128, 1140
GluI	GCNGC	4 cut(s)	28, 141, 144, 966
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	3 cut(s)	810, 956, 1119
HaeIII	GGCC	4 cut(s)	86, 160, 222, 670
HapII	CCGG	4 cut(s)	161, 192, 703, 1176
Hin1II	CATG	4 cut(s)	279, 775, 819, 1009
HincII	GTYRAC	3 cut(s)	48, 591, 997
HindII	GTYRAC	3 cut(s)	48, 591, 997
HindIII	AAGCTT	2 cut(s)	909, 1168
HinfI	GANTC	5 cut(s)	199, 286, 339, 697, 833
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	4 cut(s)	161, 192, 703, 1176
HphI	GGTGA	3 cut(s)	671, 692, 985
Hpy166II	GTNNAC	6 cut(s)	48, 273, 591, 603, 932, 997
Hpy188I	TCNGA	3 cut(s)	531, 724, 846
Hpy188III	TCNNGA	3 cut(s)	36, 128, 1110
Hpy8I	GTNNAC	6 cut(s)	48, 273, 591, 603, 932, 997
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	740, 1116
HpyCH4III	ACNGT	6 cut(s)	52, 173, 367, 676, 1081, 1210
HpyCH4IV	ACGT	2 cut(s)	570, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 140, 219, 1094, 1176
HpyF3I	CTNAG	2 cut(s)	76, 681
HpySE526I	ACGT	2 cut(s)	570, 719
Hsp92II	CATG	4 cut(s)	279, 775, 819, 1009
KpnI	GGTACC	1 cut(s)	954
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	793, 945, 1112
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	3 cut(s)	110, 937, 1100
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	7 cut(s)	121, 301, 312, 715, 869, 966, 1024
MabI	ACCWGGT	1 cut(s)	808
MaeI	CTAG	2 cut(s)	128, 1140
MaeII	ACGT	2 cut(s)	570, 719
MaeIII	GTNAC	4 cut(s)	367, 547, 676, 1150
MalI	GATC	3 cut(s)	795, 947, 1114
MboI	GATC	3 cut(s)	793, 945, 1112
MboII	GAAGA	7 cut(s)	52, 64, 674, 835, 929, 1228, 1241
MfeI	CAATTG	1 cut(s)	115
MflI	RGATCY	2 cut(s)	793, 1112
MhlI	GDGCHC	2 cut(s)	14, 1105
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	8 cut(s)	115, 243, 292, 492, 558, 847, 877, 982
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	280, 333
MmeI	TCCRAC	2 cut(s)	132, 387
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	5 cut(s)	249, 453, 495, 524, 590
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	4 cut(s)	161, 192, 703, 1176
MspR9I	CCNGG	6 cut(s)	83, 122, 162, 798, 810, 1094
MunI	CAATTG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	5 cut(s)	83, 122, 798, 810, 1094
MwoI	GCNNNNNNNGC	5 cut(s)	111, 140, 219, 1094, 1176
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	793, 945, 1112
NlaIII	CATG	4 cut(s)	279, 775, 819, 1009
NlaIV	GGNNCC	1 cut(s)	952
NmuCI	GTSAC	2 cut(s)	547, 1150
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	922
PfeI	GAWTC	3 cut(s)	199, 697, 833
PkrI	GCNGC	4 cut(s)	29, 142, 145, 967
PleI	GAGTC	2 cut(s)	280, 333
PpsI	GAGTC	2 cut(s)	280, 333
Ppu21I	YACGTR	1 cut(s)	571
PshBI	ATTAAT	1 cut(s)	249
PsiI	TTATAA	2 cut(s)	557, 960
Psp6I	CCWGG	5 cut(s)	81, 120, 796, 808, 1092
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	5 cut(s)	81, 120, 796, 808, 1092
PspN4I	GGNNCC	1 cut(s)	952
PspPI	GGNCC	3 cut(s)	158, 669, 1055
PstI	CTGCAG	1 cut(s)	970
PstNI	CAGNNNCTG	1 cut(s)	1089
PsuI	RGATCY	2 cut(s)	793, 1112
RsaI	GTAC	6 cut(s)	234, 272, 416, 952, 1078, 1134
RsaNI	GTAC	6 cut(s)	233, 271, 415, 951, 1077, 1133
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	5 cut(s)	249, 453, 495, 524, 590
SatI	GCNGC	4 cut(s)	28, 141, 144, 966
Sau3AI	GATC	3 cut(s)	793, 945, 1112
Sau96I	GGNCC	3 cut(s)	158, 669, 1055
ScaI	AGTACT	1 cut(s)	1078
SchI	GAGTC	2 cut(s)	280, 333
ScrFI	CCNGG	6 cut(s)	83, 122, 162, 798, 810, 1094
SduI	GDGCHC	2 cut(s)	14, 1105
SexAI	ACCWGGT	1 cut(s)	808
SfaNI	GCATC	7 cut(s)	121, 301, 312, 715, 869, 966, 1024
SfcI	CTRYAG	2 cut(s)	636, 966
SinI	GGWCC	1 cut(s)	1055
Sse9I	AATT	8 cut(s)	115, 243, 292, 492, 558, 847, 877, 982
SsiI	CCGC	7 cut(s)	17, 27, 140, 143, 156, 317, 1068
SspI	AATATT	1 cut(s)	1126
SspMI	CTAG	2 cut(s)	128, 1140
StyD4I	CCNGG	6 cut(s)	81, 120, 160, 796, 808, 1092
TaaI	ACNGT	6 cut(s)	52, 173, 367, 676, 1081, 1210
TaiI	ACGT	2 cut(s)	573, 722
TasI	AATT	8 cut(s)	115, 243, 292, 492, 558, 847, 877, 982
TatI	WGTACW	2 cut(s)	270, 1076
TauI	GCSGC	3 cut(s)	30, 143, 146
TfiI	GAWTC	3 cut(s)	199, 697, 833
Tru1I	TTAA	5 cut(s)	249, 453, 495, 524, 590
Tru9I	TTAA	5 cut(s)	249, 453, 495, 524, 590
TscAI	CASTG	9 cut(s)	103, 370, 481, 679, 767, 939, 1065, 1090, 1155
TseFI	GTSAC	2 cut(s)	547, 1150
TseI	GCWGC	1 cut(s)	965
Tsp45I	GTSAC	2 cut(s)	547, 1150
TspDTI	ATGAA	2 cut(s)	804, 1064
TspGWI	ACGGA	3 cut(s)	164, 521, 1242
TspRI	CASTG	9 cut(s)	103, 370, 481, 679, 767, 939, 1065, 1090, 1155
VpaK11BI	GGWCC	1 cut(s)	1055
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	847, 982
XbaI	TCTAGA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XspI	CTAG	2 cut(s)	128, 1140
ZrmI	AGTACT	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.