Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011277

Physical Location & Seq

Genomic Coordinates Reverse (-)

17494023 .. 17499763

Gene Structure 5741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCTACCCTGTTCACCACACCACCTTAGAGCCTTAACCACAATTGGGTACCTCTATCTCCTCCTCTTCTCTGTCTTTGCCCCAACCTCCTCTGCTTGCTCCAATGGGAACTGCCAGCTTCTAGAAGCTTGTGCTGCGGCCACGGACTGTGGGCCGGGTCTGTACTGTGGCAACTGCCCAACTGCGGGCAAGACTCAACCGGTTTGTACCAGAGGCCAAGCGGTCGTACCCACTTCAATTGTTAATGGCTTACCCTTCAACAAGTACACATGGCTGGTGACTCATAACTCTTTCAGCATCGTCGATGCGCCGCCTTTGCCTGGTGTTCAGAGACTCACATTTTACAATCAGGAAGATACTGTTACTAACCAGTTGAGGAATGGAGTGAGGGGGTTGATGTTGGATATGTATGATTTCGAGAATGATATCTGGCTCTGCCATTCGTTTCGGGGGCAATGCTACAACTTCACTGCGTTTCAACCTGCAATTAACACTTTGACGGAGGTGGAAGCATTTTTAAGCGAGAACCCAACAGAGATTGTGACTATTATAATCGAGGACTATGTGCATACTTCGAAGGGGTTAACAACATTGTTTACTAAGGCTGGGTTGGACAAATATTGGTTTCCTGTATCCAAAATGCCGAGAAAGGGTGAGGACTGGCCCACTGTGACTGAGATGGTGCAAGACAATCACCGGCTTATTGTTTTCACCTCTGATGCTTCGAAGGAAGCACAGGAAGGAGTAGCTTACCAATGGAAGTACATGGTGGAAAATGAAGCTGGAGATCCTGGGGTCAAACCGGGGTCATGCCCGAAGAGGAAAGAATCAAAGGCACTGAATTCAAAAAGTGTGTCTCTTTTCTTCCAAAATTATTTCCCAACATATCCAGTTGAAACTGAAGCTTGCAAAGAGCATTCAACTCCACTTGAAGCGATGGTTGGAACCTGTTTCAAAGCAGCTGGGGTGATGCCAAACTTTTTGGCAGTCAACTATTACATGAGGAGTGATGGCGGAGGTGTATTTGATGCTGTTGATAGAATGAATGGACCAACACTTTGTGGGTGTAGTACTCTCGCTGCCTGCCAGGCTGGAGCATCTTTTGGATCCTGCAAGAATGTTTCTGTACCTACTAGAAGTCCAGCAACCAACAATGCAGGAAGCTTTACTGGCTCTGTTCAGTTTGCAAATTCTGCTCCAACACTTTCTTCTACGAATCGTGTGGTTGCCTTTTTGTTTTATCTTCCACTGATGGCATTTTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

46.14

Weight (kDa)

6.0

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	73 - 363	3.7e-151	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	111 - 333	4.8e-19	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67130
fragaria_vesca	FvH4_1g16250 FvH4_1g16250 FvH4_1g16250
malus_domestica	MD02G1174800.v1.1 MD15G1285800.v1.1
prunus_persica	Prupe.7G131000_v2.0.a1
pyrus_communis	pycom02g14120 pycom15g24890
rosa_chinensis	RchiOBHm_Chr2g0105961
rosa_laevigata	RLG00000017473
rosa_multiflora	Rmu_sc0004367.1_g000025
rosa_roxburghii	Rroxscaffold_2G00137520 Rroxscaffold_2G00137670
rosa_rugosa	Rorug02G0132600
rosa_samantha	Rh2AG182900 Rh2BG193100 Rh2CG187400 Rh2DG189400
rosa_wichuraiana	Rw2G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	490
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AciI	CCGC	5 cut(s)	137, 185, 221, 311, 1014
AclWI	GGATC	3 cut(s)	782, 1101, 1114
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	841, 1189
AcuI	CTGAAG	1 cut(s)	921
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	8 cut(s)	50, 164, 208, 228, 266, 764, 1072, 1128
AfiI	CCNNNNNNNGG	5 cut(s)	45, 184, 185, 320, 650
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	8 cut(s)	237, 259, 479, 846, 896, 921, 932, 955
AjnI	CCWGG	3 cut(s)	319, 790, 1086
AjuI	GAANNNNNNNTTGG	4 cut(s)	924, 956, 1192, 1224
AluBI	AGCT	7 cut(s)	118, 128, 749, 782, 905, 962, 1164
AluI	AGCT	7 cut(s)	118, 128, 749, 782, 905, 962, 1164
Alw26I	GTCTC	2 cut(s)	325, 861
AlwI	GGATC	3 cut(s)	782, 1101, 1114
AoxI	GGCC	4 cut(s)	138, 152, 214, 662
ApeKI	GCWGC	3 cut(s)	134, 959, 1079
ApoI	RAATTY	2 cut(s)	841, 1189
ArsI	GACNNNNNNTTYG	4 cut(s)	839, 871, 1041, 1073
AsiGI	ACCGGT	1 cut(s)	199
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	3 cut(s)	152, 663, 1049
AsuC2I	CCSGG	2 cut(s)	156, 804
AsuHPI	GGTGA	6 cut(s)	6, 289, 665, 686, 703, 979
AsuII	TTCGAA	2 cut(s)	575, 725
AvaII	GGWCC	1 cut(s)	1049
BamHI	GGATCC	1 cut(s)	1106
BanI	GGYRCC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	121, 971, 1066
BccI	CCATC	4 cut(s)	673, 931, 1004, 1246
BciT130I	CCWGG	3 cut(s)	321, 792, 1088
BciVI	GTATCC	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	156, 804
BcoDI	GTCTC	2 cut(s)	325, 861
BfaI	CTAG	2 cut(s)	122, 1134
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	643
BglI	GCCNNNNNGGC	1 cut(s)	1088
BisI	GCNGC	5 cut(s)	135, 138, 311, 960, 1080
BlsI	GCNGC	5 cut(s)	136, 139, 312, 961, 1081
BmcAI	AGTACT	1 cut(s)	1072
Bme1390I	CCNGG	5 cut(s)	156, 321, 792, 804, 1088
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	3 cut(s)	152, 663, 1049
BmiI	GGNNCC	3 cut(s)	50, 946, 1108
BmrFI	CCNGG	5 cut(s)	156, 321, 792, 804, 1088
BmsI	GCATC	6 cut(s)	295, 306, 709, 960, 1018, 1106
BpmI	CTGGAG	2 cut(s)	804, 1113
Bpu14I	TTCGAA	2 cut(s)	575, 725
BpuMI	CCSGG	2 cut(s)	156, 804
BsaJI	CCNNGG	3 cut(s)	141, 791, 803
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 184, 185, 320, 650
Bse118I	RCCGGY	2 cut(s)	199, 696
Bse1I	ACTGG	4 cut(s)	370, 665, 890, 1174
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	321, 792, 1088
BseDI	CCNNGG	3 cut(s)	141, 791, 803
BseLI	CCNNNNNNNGG	5 cut(s)	45, 184, 185, 320, 650
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	4 cut(s)	370, 665, 890, 1174
BseRI	GAGGAG	4 cut(s)	50, 53, 79, 1018
BseXI	GCAGC	3 cut(s)	121, 971, 1066
BseYI	CCCAGC	2 cut(s)	605, 962
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	140, 154, 216, 664
BshNI	GGYRCC	1 cut(s)	48
BshTI	ACCGGT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	155, 200, 697, 803
BslI	CCNNNNNNNGG	5 cut(s)	45, 184, 185, 320, 650
BsmAI	GTCTC	2 cut(s)	325, 861
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	4 cut(s)	140, 154, 216, 664
Bsp119I	TTCGAA	2 cut(s)	575, 725
Bsp143I	GATC	2 cut(s)	787, 1106
BspACI	CCGC	5 cut(s)	137, 185, 221, 311, 1014
BspANI	GGCC	4 cut(s)	140, 154, 216, 664
BspCNI	CTCAG	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	50, 946, 1108
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	3 cut(s)	782, 1101, 1114
BspT104I	TTCGAA	2 cut(s)	575, 725
BspT107I	GGYRCC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	199, 696
BsrI	ACTGG	4 cut(s)	370, 665, 890, 1174
BssAI	RCCGGY	2 cut(s)	199, 696
BssECI	CCNNGG	3 cut(s)	141, 791, 803
BssMI	GATC	2 cut(s)	787, 1106
Bst2UI	CCWGG	3 cut(s)	321, 792, 1088
Bst4CI	ACNGT	4 cut(s)	149, 167, 361, 670
Bst6I	CTCTTC	2 cut(s)	71, 812
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstBI	TTCGAA	2 cut(s)	575, 725
BstC8I	GCNNGC	5 cut(s)	97, 116, 187, 907, 1084
BstDEI	CTNAG	3 cut(s)	26, 600, 675
BstDSI	CCRYGG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	2 cut(s)	790, 1109
BstMAI	GTCTC	2 cut(s)	325, 861
BstMBI	GATC	2 cut(s)	787, 1106
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 316, 1088, 1170, 1193
BstNI	CCWGG	3 cut(s)	321, 792, 1088
BstSCI	CCNGG	5 cut(s)	154, 319, 790, 802, 1086
BstV1I	GCAGC	3 cut(s)	121, 971, 1066
BstX2I	RGATCY	2 cut(s)	787, 1106
BstYI	RGATCY	2 cut(s)	787, 1106
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	4 cut(s)	140, 154, 216, 664
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	950
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	4 cut(s)	468, 666, 836, 1247
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	5 cut(s)	97, 116, 187, 907, 1084
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	2 cut(s)	199, 696
Cfr13I	GGNCC	3 cut(s)	152, 663, 1049
Csp6I	GTAC	8 cut(s)	49, 163, 207, 227, 265, 763, 1071, 1127
CspAI	ACCGGT	1 cut(s)	199
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	4 cut(s)	270, 766, 810, 1000
CviQI	GTAC	8 cut(s)	49, 163, 207, 227, 265, 763, 1071, 1127
DdeI	CTNAG	3 cut(s)	26, 600, 675
DpnI	GATC	2 cut(s)	789, 1108
DpnII	GATC	2 cut(s)	787, 1106
DraIII	CACNNNGTG	1 cut(s)	1061
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	2 cut(s)	71, 812
EarI	CTCTTC	2 cut(s)	71, 812
EciI	GGCGGA	1 cut(s)	1029
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	1049
Eco57I	CTGAAG	1 cut(s)	921
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	319, 790, 1086
EcoRV	GATATC	1 cut(s)	427
FaeI	CATG	4 cut(s)	273, 769, 813, 1003
FatI	CATG	4 cut(s)	269, 765, 809, 999
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	5 cut(s)	135, 138, 311, 960, 1080
Fsp4HI	GCNGC	5 cut(s)	135, 138, 311, 960, 1080
FspBI	CTAG	2 cut(s)	122, 1134
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	5 cut(s)	135, 138, 311, 960, 1080
GsaI	CCCAGC	2 cut(s)	609, 966
GsuI	CTGGAG	2 cut(s)	804, 1113
HaeIII	GGCC	4 cut(s)	140, 154, 216, 664
HapII	CCGG	4 cut(s)	155, 200, 697, 803
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	273, 769, 813, 1003
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	2 cut(s)	585, 991
HindII	GTYRAC	2 cut(s)	585, 991
HindIII	AAGCTT	3 cut(s)	126, 903, 1162
HinfI	GANTC	5 cut(s)	193, 280, 333, 827, 1216
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	4 cut(s)	155, 200, 697, 803
HphI	GGTGA	6 cut(s)	6, 289, 665, 686, 703, 979
Hpy166II	GTNNAC	5 cut(s)	14, 267, 585, 597, 991
Hpy188I	TCNGA	2 cut(s)	330, 718
Hpy188III	TCNNGA	3 cut(s)	122, 350, 418
Hpy8I	GTNNAC	5 cut(s)	14, 267, 585, 597, 991
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	4 cut(s)	265, 571, 721, 734
HpyCH4III	ACNGT	4 cut(s)	149, 167, 361, 670
HpyCH4V	TGCA	7 cut(s)	485, 568, 685, 909, 1113, 1157, 1187
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 316, 1088, 1170, 1193
HpyF3I	CTNAG	3 cut(s)	26, 600, 675
Hsp92II	CATG	4 cut(s)	273, 769, 813, 1003
HspAI	GCGC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	787, 1106
LmnI	GCTCC	3 cut(s)	104, 1094, 1201
Lsp1109I	GCAGC	3 cut(s)	121, 971, 1066
LweI	GCATC	6 cut(s)	295, 306, 709, 960, 1018, 1106
MaeI	CTAG	2 cut(s)	122, 1134
MaeIII	GTNAC	4 cut(s)	277, 361, 541, 670
MalI	GATC	2 cut(s)	789, 1108
MboI	GATC	2 cut(s)	787, 1106
MboII	GAAGA	6 cut(s)	58, 365, 829, 856, 1200, 1235
MfeI	CAATTG	2 cut(s)	42, 237
MflI	RGATCY	2 cut(s)	787, 1106
MluCI	AATT	6 cut(s)	42, 237, 486, 841, 871, 1189
MlyI	GAGTC	3 cut(s)	187, 274, 327
MmeI	TCCRAC	4 cut(s)	381, 591, 922, 1223
MseI	TTAA	5 cut(s)	35, 243, 489, 518, 584
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	4 cut(s)	155, 200, 697, 803
MspR9I	CCNGG	5 cut(s)	156, 321, 792, 804, 1088
MunI	CAATTG	2 cut(s)	42, 237
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	3 cut(s)	321, 792, 1088
MwoI	GCNNNNNNNGC	5 cut(s)	134, 316, 1088, 1170, 1193
NciI	CCSGG	2 cut(s)	156, 804
NdeII	GATC	2 cut(s)	787, 1106
NlaIII	CATG	4 cut(s)	273, 769, 813, 1003
NlaIV	GGNNCC	3 cut(s)	50, 946, 1108
NmeAIII	GCCGAG	1 cut(s)	669
NmuCI	GTSAC	3 cut(s)	277, 541, 670
NspV	TTCGAA	2 cut(s)	575, 725
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	2 cut(s)	827, 1216
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	5 cut(s)	136, 139, 312, 961, 1081
PleI	GAGTC	3 cut(s)	187, 274, 327
PpsI	GAGTC	3 cut(s)	187, 274, 327
PsiI	TTATAA	1 cut(s)	551
Psp6I	CCWGG	3 cut(s)	319, 790, 1086
PspFI	CCCAGC	2 cut(s)	605, 962
PspGI	CCWGG	3 cut(s)	319, 790, 1086
PspN4I	GGNNCC	3 cut(s)	50, 946, 1108
PspPI	GGNCC	3 cut(s)	152, 663, 1049
PsuI	RGATCY	2 cut(s)	787, 1106
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	8 cut(s)	50, 164, 208, 228, 266, 764, 1072, 1128
RsaNI	GTAC	8 cut(s)	49, 163, 207, 227, 265, 763, 1071, 1127
SaqAI	TTAA	5 cut(s)	35, 243, 489, 518, 584
SatI	GCNGC	5 cut(s)	135, 138, 311, 960, 1080
Sau3AI	GATC	2 cut(s)	787, 1106
Sau96I	GGNCC	3 cut(s)	152, 663, 1049
ScaI	AGTACT	1 cut(s)	1072
SchI	GAGTC	3 cut(s)	187, 274, 327
ScrFI	CCNGG	5 cut(s)	156, 321, 792, 804, 1088
SfaNI	GCATC	6 cut(s)	295, 306, 709, 960, 1018, 1106
SfuI	TTCGAA	2 cut(s)	575, 725
SinI	GGWCC	1 cut(s)	1049
Sse9I	AATT	6 cut(s)	42, 237, 486, 841, 871, 1189
SsiI	CCGC	5 cut(s)	137, 185, 221, 311, 1014
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	2 cut(s)	122, 1134
StyD4I	CCNGG	5 cut(s)	154, 319, 790, 802, 1086
TaaI	ACNGT	4 cut(s)	149, 167, 361, 670
TaqI	TCGA	5 cut(s)	303, 417, 555, 575, 725
TasI	AATT	6 cut(s)	42, 237, 486, 841, 871, 1189
TatI	WGTACW	4 cut(s)	162, 264, 762, 1070
TauI	GCSGC	2 cut(s)	140, 313
TfiI	GAWTC	2 cut(s)	827, 1216
Tru1I	TTAA	5 cut(s)	35, 243, 489, 518, 584
Tru9I	TTAA	5 cut(s)	35, 243, 489, 518, 584
TscAI	CASTG	4 cut(s)	475, 673, 843, 1254
TseFI	GTSAC	3 cut(s)	277, 541, 670
TseI	GCWGC	3 cut(s)	134, 959, 1079
Tsp45I	GTSAC	3 cut(s)	277, 541, 670
TspDTI	ATGAA	2 cut(s)	792, 1058
TspGWI	ACGGA	2 cut(s)	158, 515
TspRI	CASTG	4 cut(s)	475, 673, 843, 1254
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	841, 1189
XbaI	TCTAGA	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	122, 1134
ZrmI	AGTACT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.