MD02G1245100.v1.1

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014791
Physical Location & Seq
Reverse (-)
29509320 .. 29512803
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1245100.v1.1.491

Sequence Viewer

Length: 972 bp
ATGCTCGGATTTCTCTGCGCGCGCCGCAAGACTTGGATCGTCACTTCCCTCTCAGCCTTCACTCACGGCTCGGCGGCAGCTCACAAAACCCGACTCCTCCTCCAAACCCACAGTCGCCCGATTCATCAACAAATCGCTAACTTCTCTTGCGGGTTTGAGAACCGACGATACCATTCGAGCCCGCTCGGCTCGGATTGCGGCGCCGGTGCGGCATCTATATGGCACGGCTTGCTTCCCTCTGCCGGCAATAGCAGATCTCGAAATCTCTGCAGGCCGGCCATCCACTACGAGCGAGAGGGTTCATGGAATGCCGCGTGGGATGCACGTCCCGCTCGTTGGCTTCACCGCCCCGATTCCGCTTGGCTACTTTTTGGCGTCCGCAGTTGCCTCGCCCCGACCAATTGGGCTGTGGACTCGGCTCCCGGTGAAACCAATGACGTTTACAATTCGAAGACGGACTGTGATTCGAAAAGCTCGTCTTCTCCTGAGAACATTATTGATAGCTCCGCCGCTGATTACAGAGTCACAGGGGTTCTAGCTGATGGCCGATGCCTATTCAGGGCCATAGCCCACGTGGCTTGCTTGAGAAATGGGGAGGAAGCTCCTGATGAGAATCGTCAGAGAGATCTCGCTGATGAATTAAGATCTCAGGTTGTCGATGAGCTTTTAAAGAGGCGGAAGGAAACAGAGTGGTTCATTGAAGGTGATTTTGATGCGTATGTGAAGAGACTTCAACAACCTTATGTTTGGGGTGGTGAACCTGAGTTGCTAATGGCTTCTCATGTGTTAAAGACACCGATATCAGTCTTCATGGTAGATAGAAGCTCTTCTGGTTTGGTTAACATAGCAAAATATGGTGAAGAGTATCAGAAAGAAGAGGAGAAACCAATCAATGTGCTCTTTCACGGATATGGTCACTATGACATCTTGGAGTCTTTCTCAGAACAGAGTTTGCAGAAACTAAGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

324

Amino Acids

36.27

Weight (kDa)

6.46

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 180 - 305 7.6e-22 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccBSI CCGCTC 2 cut(s) 184, 332
AccII CGCG 3 cut(s) 20, 22, 314
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 2 cut(s) 276, 544
AcvI CACGTG 1 cut(s) 574
AcyI GRCGYC 2 cut(s) 201, 375
AfiI CCNNNNNNNGG 3 cut(s) 242, 336, 559
AgsI TTSAA 2 cut(s) 701, 734
AjiI CACGTC 1 cut(s) 326
AluBI AGCT 7 cut(s) 80, 474, 504, 539, 602, 664, 825
AluI AGCT 7 cut(s) 80, 474, 504, 539, 602, 664, 825
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 1 cut(s) 44
AoxI GGCC 4 cut(s) 272, 276, 544, 561
ApeKI GCWGC 1 cut(s) 77
ArsI GACNNNNNNTTYG 4 cut(s) 97, 129, 461, 493
Asp700I GAANNNNTTC 1 cut(s) 826
AspLEI GCGC 4 cut(s) 20, 22, 24, 203
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 5 cut(s) 335, 437, 716, 767, 869
AsuII TTCGAA 2 cut(s) 449, 467
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 574
BbsI GAAGAC 3 cut(s) 458, 471, 799
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 287, 536
BceAI ACGGC 2 cut(s) 82, 241
BcgI CGANNNNNNTGC 4 cut(s) 249, 283, 370, 404
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 204
BglI GCCNNNNNGGC 3 cut(s) 186, 209, 575
BglII AGATCT 3 cut(s) 254, 625, 644
BisI GCNGC 7 cut(s) 25, 75, 78, 199, 210, 312, 510
BlsI GCNGC 7 cut(s) 26, 76, 79, 200, 211, 313, 511
Bme1390I CCNGG 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 202, 420
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 221, 310, 539, 703
BpiI GAAGAC 3 cut(s) 458, 471, 799
BplI GAGNNNNNCTC 2 cut(s) 923, 955
Bpu14I TTCGAA 2 cut(s) 449, 467
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 2 cut(s) 201, 375
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 336, 559
Bse118I RCCGGY 3 cut(s) 203, 242, 274
Bse8I GATNNNNATC 1 cut(s) 612
BseGI GGATG 2 cut(s) 279, 325
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 3 cut(s) 242, 336, 559
BseMII CTCAG 5 cut(s) 66, 477, 662, 753, 954
BsePI GCGCGC 2 cut(s) 18, 20
BseRI GAGGAG 3 cut(s) 86, 89, 893
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 3 cut(s) 20, 22, 314
BshFI GGCC 4 cut(s) 274, 278, 546, 563
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 4 cut(s) 204, 243, 275, 423
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 242, 336, 559
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 4 cut(s) 274, 278, 546, 563
Bsp119I TTCGAA 2 cut(s) 449, 467
Bsp1286I GDGCHC 2 cut(s) 182, 900
Bsp143I GATC 4 cut(s) 36, 254, 625, 644
BspANI GGCC 4 cut(s) 274, 278, 546, 563
BspCNI CTCAG 5 cut(s) 65, 478, 661, 754, 953
BspFNI CGCG 3 cut(s) 20, 22, 314
BspLI GGNNCC 2 cut(s) 202, 420
BspMAI CTGCAG 1 cut(s) 272
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 832
BspT104I TTCGAA 2 cut(s) 449, 467
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 2 cut(s) 184, 332
BsrFI RCCGGY 3 cut(s) 203, 242, 274
BssAI RCCGGY 3 cut(s) 203, 242, 274
BssHII GCGCGC 2 cut(s) 18, 20
BssMI GATC 4 cut(s) 36, 254, 625, 644
BssNI GRCGYC 2 cut(s) 201, 375
Bst4CI ACNGT 2 cut(s) 113, 461
Bst6I CTCTTC 4 cut(s) 719, 832, 855, 870
BstACI GRCGYC 2 cut(s) 201, 375
BstAPI GCANNNNNTGC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 574
BstBI TTCGAA 2 cut(s) 449, 467
BstC8I GCNNGC 8 cut(s) 20, 22, 182, 230, 244, 272, 276, 580
BstDEI CTNAG 6 cut(s) 52, 486, 648, 762, 940, 962
BstF5I GGATG 2 cut(s) 279, 325
BstFNI CGCG 3 cut(s) 20, 22, 314
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 4 cut(s) 20, 22, 24, 203
BstKTI GATC 4 cut(s) 39, 257, 628, 647
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 4 cut(s) 36, 254, 625, 644
BstMWI GCNNNNNNNGC 8 cut(s) 24, 186, 195, 209, 229, 320, 329, 575
BstNSI RCATGY 1 cut(s) 970
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 3 cut(s) 20, 22, 314
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 3 cut(s) 458, 471, 799
BstX2I RGATCY 3 cut(s) 254, 625, 644
BstYI RGATCY 3 cut(s) 254, 625, 644
BsuRI GGCC 4 cut(s) 274, 278, 546, 563
BtrI CACGTC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 279, 325
Cac8I GCNNGC 8 cut(s) 20, 22, 182, 230, 244, 272, 276, 580
CfoI GCGC 4 cut(s) 20, 22, 24, 203
Cfr10I RCCGGY 3 cut(s) 203, 242, 274
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 560, 595
CviAII CATG 4 cut(s) 303, 782, 811, 967
DdeI CTNAG 6 cut(s) 52, 486, 648, 762, 940, 962
DinI GGCGCC 1 cut(s) 202
DpnI GATC 4 cut(s) 38, 256, 627, 646
DpnII GATC 4 cut(s) 36, 254, 625, 644
DraI TTTAAA 1 cut(s) 669
EaeI YGGCCR 2 cut(s) 276, 544
Eam1104I CTCTTC 4 cut(s) 719, 832, 855, 870
EarI CTCTTC 4 cut(s) 719, 832, 855, 870
EciI GGCGGA 2 cut(s) 496, 691
Eco24I GRGCYC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 801
Eco72I CACGTG 1 cut(s) 574
EcoRV GATATC 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 182
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
FaeI CATG 4 cut(s) 306, 785, 814, 970
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 1 cut(s) 312
FatI CATG 4 cut(s) 302, 781, 810, 966
FauI CCCGC 3 cut(s) 143, 189, 337
Fnu4HI GCNGC 7 cut(s) 25, 75, 78, 199, 210, 312, 510
FokI GGATG 2 cut(s) 266, 332
FriOI GRGCYC 1 cut(s) 182
FseI GGCCGGCC 1 cut(s) 278
Fsp4HI GCNGC 7 cut(s) 25, 75, 78, 199, 210, 312, 510
FspBI CTAG 1 cut(s) 536
GlaI GCGC 4 cut(s) 19, 21, 23, 202
GluI GCNGC 7 cut(s) 25, 75, 78, 199, 210, 312, 510
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 4 cut(s) 274, 278, 546, 563
HapII CCGG 4 cut(s) 204, 243, 275, 423
HgaI GACGC 1 cut(s) 364
HhaI GCGC 4 cut(s) 20, 22, 24, 203
Hin1I GRCGYC 2 cut(s) 201, 375
Hin1II CATG 4 cut(s) 306, 785, 814, 970
Hin6I GCGC 4 cut(s) 18, 20, 22, 201
HinP1I GCGC 4 cut(s) 18, 20, 22, 201
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HinfI GANTC 8 cut(s) 93, 121, 353, 413, 464, 522, 613, 932
HpaI GTTAAC 1 cut(s) 841
HpaII CCGG 4 cut(s) 204, 243, 275, 423
HphI GGTGA 5 cut(s) 335, 437, 716, 767, 869
Hpy166II GTNNAC 4 cut(s) 412, 442, 758, 841
Hpy188I TCNGA 5 cut(s) 8, 193, 621, 870, 943
Hpy188III TCNNGA 3 cut(s) 258, 485, 605
Hpy8I GTNNAC 4 cut(s) 412, 442, 758, 841
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 3 cut(s) 67, 673, 695
HpyCH4III ACNGT 2 cut(s) 113, 461
HpyCH4IV ACGT 3 cut(s) 325, 438, 573
HpyCH4V TGCA 3 cut(s) 270, 323, 955
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 186, 195, 209, 229, 320, 329, 575
HpyF3I CTNAG 6 cut(s) 52, 486, 648, 762, 940, 962
HpySE526I ACGT 3 cut(s) 325, 438, 573
Hsp92I GRCGYC 2 cut(s) 201, 375
Hsp92II CATG 4 cut(s) 306, 785, 814, 970
HspAI GCGC 4 cut(s) 18, 20, 22, 201
KasI GGCGCC 1 cut(s) 200
KroI GCCGGC 2 cut(s) 242, 274
KroNI GCCGGC 2 cut(s) 244, 276
KspAI GTTAAC 1 cut(s) 841
Kzo9I GATC 4 cut(s) 36, 254, 625, 644
LguI GCTCTTC 1 cut(s) 832
LmnI GCTCC 3 cut(s) 424, 509, 607
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 4 cut(s) 221, 310, 539, 703
MaeI CTAG 1 cut(s) 536
MaeII ACGT 3 cut(s) 325, 438, 573
MaeIII GTNAC 3 cut(s) 40, 523, 914
MalI GATC 4 cut(s) 38, 256, 627, 646
MbiI CCGCTC 2 cut(s) 184, 332
MboI GATC 4 cut(s) 36, 254, 625, 644
MboII GAAGA 7 cut(s) 463, 471, 736, 799, 819, 872, 887
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 3 cut(s) 254, 625, 644
MhlI GDGCHC 2 cut(s) 182, 900
MluCI AATT 3 cut(s) 400, 445, 638
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 4 cut(s) 87, 407, 531, 941
MnlI CCTC 9 cut(s) 59, 107, 110, 247, 289, 398, 589, 666, 871
MroNI GCCGGC 2 cut(s) 242, 274
MroXI GAANNNNTTC 1 cut(s) 826
MseI TTAA 4 cut(s) 641, 668, 788, 840
MslI CAYNNNNRTG 2 cut(s) 217, 909
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 4 cut(s) 204, 243, 275, 423
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 3 cut(s) 20, 22, 314
MwoI GCNNNNNNNGC 8 cut(s) 24, 186, 195, 209, 229, 320, 329, 575
NaeI GCCGGC 2 cut(s) 244, 276
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 423
NdeII GATC 4 cut(s) 36, 254, 625, 644
NgoMIV GCCGGC 2 cut(s) 242, 274
NlaIII CATG 4 cut(s) 306, 785, 814, 970
NlaIV GGNNCC 2 cut(s) 202, 420
NmeAIII GCCGAG 3 cut(s) 50, 165, 395
NmuCI GTSAC 3 cut(s) 40, 523, 914
NspI RCATGY 1 cut(s) 970
NspV TTCGAA 2 cut(s) 449, 467
PauI GCGCGC 2 cut(s) 18, 20
PciSI GCTCTTC 1 cut(s) 832
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 473
PctI GAATGC 1 cut(s) 313
PdiI GCCGGC 2 cut(s) 244, 276
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 4 cut(s) 121, 353, 464, 613
PkrI GCNGC 7 cut(s) 26, 76, 79, 200, 211, 313, 511
PleI GAGTC 4 cut(s) 87, 407, 530, 940
PluTI GGCGCC 1 cut(s) 204
PmaCI CACGTG 1 cut(s) 574
PmlI CACGTG 1 cut(s) 574
PpsI GAGTC 4 cut(s) 87, 407, 530, 940
Ppu21I YACGTR 1 cut(s) 574
PspCI CACGTG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 202, 420
PspPI GGNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 152, 184
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 3 cut(s) 254, 625, 644
PteI GCGCGC 2 cut(s) 18, 20
RigI GGCCGGCC 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 217, 909
SapI GCTCTTC 1 cut(s) 832
SaqAI TTAA 4 cut(s) 641, 668, 788, 840
SatI GCNGC 7 cut(s) 25, 75, 78, 199, 210, 312, 510
Sau3AI GATC 4 cut(s) 36, 254, 625, 644
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 4 cut(s) 87, 407, 531, 941
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 2 cut(s) 182, 900
SfaNI GCATC 4 cut(s) 221, 310, 539, 703
SfcI CTRYAG 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 202
SfuI TTCGAA 2 cut(s) 449, 467
SgrAI CRCCGGYG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 217, 909
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 3 cut(s) 400, 445, 638
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 113, 461
TaiI ACGT 3 cut(s) 328, 441, 576
TaqI TCGA 5 cut(s) 176, 259, 449, 467, 657
TasI AATT 3 cut(s) 400, 445, 638
TauI GCSGC 6 cut(s) 27, 77, 201, 212, 314, 512
TfiI GAWTC 4 cut(s) 121, 353, 464, 613
Tru1I TTAA 4 cut(s) 641, 668, 788, 840
Tru9I TTAA 4 cut(s) 641, 668, 788, 840
TseFI GTSAC 3 cut(s) 40, 523, 914
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 3 cut(s) 40, 523, 914
TspDTI ATGAA 5 cut(s) 113, 291, 651, 685, 799
TspGWI ACGGA 2 cut(s) 470, 921
XceI RCATGY 1 cut(s) 970
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 571
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.