Rh1DG141900

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014791
Physical Location & Seq
Forward (+)
29905309 .. 29908793
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG141900.1

Sequence Viewer

Length: 876 bp
ATGCTCGGATTTCTCTGTGCGCGCCGGAAAACTTGGATTGTCAGCTCCCTTTCTTCTTTTGCTCACGGCCCGGCGGCGATTCACCAGAGCCGGATCGTCCAAAACCCGTTGATTCAGCACCAACTCGCTAACTTTTCCGGCGAAGCCCCCCGCCGCCACCACCACAACAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCGGCGTCCATATGGCACGCTATTCTTCCCTCGTCCGGGCTTTGGAGGCGACGGGATCTCCGTCGTCCTGCGATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTGGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTTCTTTTTGGAGTTTGCAACTGCCTGGCGCCGATAGACTGGGGTATTACAACAACTAACGCAACCAACGATGAGGAGTCGAATAACAAAACTGAACCTTGTGATTCGAAAAGCCTCATTACTTCTTCTGATGACAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCAGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCGTCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTTGTTGATGAGCTCTTAAAGAGGCGGGAGGAAACTGAATGGTTCATTGAAGGCGATTTCGATGCATATGTGAAGAGAATTCAACAGCCTTATGTTTGGGGAGGAGAACCTGAATTGCTTATGGCTTCTCATGTTAAAAAGTTAGTTCACGTTTTTTTAATTATTTTATTGTACCATGATTATTTTTCTTTAAACTTTCTGGTAGAATTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

291

Amino Acids

32.79

Weight (kDa)

6.22

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 183 - 265 3.9e-16 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 397
AccII CGCG 2 cut(s) 22, 209
AclWI GGATC 3 cut(s) 101, 270, 274
AcsI RAATTY 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 550
AcyI GRCGYC 3 cut(s) 204, 212, 398
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 3 cut(s) 242, 243, 249
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 2 cut(s) 710, 743
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 7 cut(s) 45, 181, 292, 516, 637, 656, 673
AluI AGCT 7 cut(s) 45, 181, 292, 516, 637, 656, 673
Alw21I GWGCWC 4 cut(s) 518, 639, 658, 675
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 3 cut(s) 101, 270, 274
AlwNI CAGNNNCTG 1 cut(s) 174
AoxI GGCC 2 cut(s) 67, 353
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 738
AspLEI GCGC 5 cut(s) 22, 24, 173, 206, 400
AspS9I GGNCC 2 cut(s) 68, 354
AsuC2I CCSGG 3 cut(s) 71, 244, 335
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 544
BanI GGYRCC 2 cut(s) 203, 397
BanII GRGCYC 4 cut(s) 518, 639, 658, 675
Bbv12I GWGCWC 4 cut(s) 518, 639, 658, 675
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 545
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 3 cut(s) 71, 244, 335
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 182, 545
BfoI RGCGCY 3 cut(s) 174, 207, 401
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
BlsI GCNGC 8 cut(s) 76, 155, 197, 200, 203, 208, 211, 319
Bme1390I CCNGG 4 cut(s) 71, 244, 335, 395
BmgT120I GGNCC 2 cut(s) 68, 354
BmiI GGNNCC 4 cut(s) 205, 347, 399, 609
BmrFI CCNGG 4 cut(s) 71, 244, 335, 395
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 2 cut(s) 316, 712
BmtI GCTAGC 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 613, 642
BpuMI CCSGG 3 cut(s) 71, 244, 335
BsaHI GRCGYC 3 cut(s) 204, 212, 398
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 243, 249
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 242, 243, 249
BseNI ACTGG 1 cut(s) 413
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 458, 777
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 2 cut(s) 22, 209
BshFI GGCC 2 cut(s) 69, 355
BshNI GGYRCC 2 cut(s) 203, 397
BsiHKAI GWGCWC 4 cut(s) 518, 639, 658, 675
BsiSI CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
BslI CCNNNNNNNGG 3 cut(s) 242, 243, 249
BsmAI GTCTC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 69, 355
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 4 cut(s) 518, 639, 658, 675
Bsp143I GATC 3 cut(s) 93, 262, 279
BspANI GGCC 2 cut(s) 69, 355
BspFNI CGCG 2 cut(s) 22, 209
BspLI GGNNCC 4 cut(s) 205, 347, 399, 609
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 3 cut(s) 101, 270, 274
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 2 cut(s) 203, 397
BspTI CTTAAG 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 207
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 3 cut(s) 93, 262, 279
BssNI GRCGYC 3 cut(s) 204, 212, 398
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 2 cut(s) 569, 728
BstACI GRCGYC 3 cut(s) 204, 212, 398
BstAFI CTTAAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 22, 209
BstH2I RGCGCY 3 cut(s) 174, 207, 401
BstHHI GCGC 5 cut(s) 22, 24, 173, 206, 400
BstKTI GATC 3 cut(s) 96, 265, 282
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 3 cut(s) 93, 262, 279
BstMWI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 2 cut(s) 195, 584
BstSCI CCNGG 4 cut(s) 69, 242, 333, 393
BstUI CGCG 2 cut(s) 22, 209
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 2 cut(s) 69, 355
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 5 cut(s) 22, 24, 173, 206, 400
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 68, 354
Cfr42I CCGCGG 1 cut(s) 210
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 832
CviAII CATG 4 cut(s) 192, 581, 791, 836
CviQI GTAC 1 cut(s) 832
DinI GGCGCC 2 cut(s) 205, 399
DpnI GATC 3 cut(s) 95, 264, 281
DpnII GATC 3 cut(s) 93, 262, 279
DraI TTTAAA 1 cut(s) 852
Eam1104I CTCTTC 2 cut(s) 569, 728
EarI CTCTTC 2 cut(s) 569, 728
Ecl136II GAGCTC 4 cut(s) 516, 637, 656, 673
Eco24I GRGCYC 4 cut(s) 518, 639, 658, 675
Eco53kI GAGCTC 4 cut(s) 516, 637, 656, 673
Eco57I CTGAAG 1 cut(s) 550
EcoICRI GAGCTC 4 cut(s) 516, 637, 656, 673
EcoRI GAATTC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 4 cut(s) 518, 639, 658, 675
EgeI GGCGCC 2 cut(s) 205, 399
EheI GGCGCC 2 cut(s) 205, 399
FaeI CATG 4 cut(s) 195, 584, 794, 839
FatI CATG 4 cut(s) 191, 580, 790, 835
FauI CCCGC 2 cut(s) 158, 678
FauNDI CATATG 2 cut(s) 218, 727
Fnu4HI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 4 cut(s) 518, 639, 658, 675
Fsp4HI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
FspBI CTAG 2 cut(s) 182, 545
GlaI GCGC 5 cut(s) 21, 23, 172, 205, 399
GluI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
HaeII RGCGCY 3 cut(s) 174, 207, 401
HaeIII GGCC 2 cut(s) 69, 355
HapII CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
HgaI GACGC 1 cut(s) 201
HhaI GCGC 5 cut(s) 22, 24, 173, 206, 400
Hin1I GRCGYC 3 cut(s) 204, 212, 398
Hin1II CATG 4 cut(s) 195, 584, 794, 839
Hin6I GCGC 5 cut(s) 20, 22, 171, 204, 398
HinP1I GCGC 5 cut(s) 20, 22, 171, 204, 398
HinfI GANTC 5 cut(s) 79, 112, 359, 446, 473
HpaII CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 4 cut(s) 8, 499, 569, 630
Hpy188III TCNNGA 2 cut(s) 323, 614
Hpy8I GTNNAC 1 cut(s) 808
Hpy99I CGWCG 2 cut(s) 261, 273
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 2 cut(s) 387, 725
HpyF10VI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
HpySE526I ACGT 1 cut(s) 810
Hsp92I GRCGYC 3 cut(s) 204, 212, 398
Hsp92II CATG 4 cut(s) 195, 584, 794, 839
HspAI GCGC 5 cut(s) 20, 22, 171, 204, 398
KasI GGCGCC 2 cut(s) 203, 397
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 3 cut(s) 93, 262, 279
LmnI GCTCC 3 cut(s) 50, 351, 521
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 316, 712
MaeI CTAG 2 cut(s) 182, 545
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 1 cut(s) 532
MalI GATC 3 cut(s) 95, 264, 281
MboI GATC 3 cut(s) 93, 262, 279
MboII GAAGA 5 cut(s) 45, 224, 486, 556, 745
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 4 cut(s) 518, 639, 658, 675
MluCI AATT 5 cut(s) 647, 738, 773, 819, 866
Mly113I GGCGCC 2 cut(s) 204, 398
MlyI GAGTC 2 cut(s) 353, 455
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 7 cut(s) 294, 650, 677, 795, 818, 851, 874
MspA1I CMGCKG 2 cut(s) 209, 521
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
MspR9I CCNGG 4 cut(s) 71, 244, 335, 395
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 2 cut(s) 22, 209
MwoI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
NarI GGCGCC 2 cut(s) 204, 398
NciI CCSGG 3 cut(s) 71, 244, 335
NdeI CATATG 2 cut(s) 218, 727
NdeII GATC 3 cut(s) 93, 262, 279
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 4 cut(s) 195, 584, 794, 839
NlaIV GGNNCC 4 cut(s) 205, 347, 399, 609
NmeAIII GCCGAG 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 2 cut(s) 195, 584
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 195
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 2 cut(s) 265, 435
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 3 cut(s) 79, 112, 473
PkrI GCNGC 8 cut(s) 76, 155, 197, 200, 203, 208, 211, 319
PleI GAGTC 2 cut(s) 353, 454
PluTI GGCGCC 2 cut(s) 207, 401
PpsI GAGTC 2 cut(s) 353, 454
PscI ACATGT 1 cut(s) 580
Psp124BI GAGCTC 4 cut(s) 518, 639, 658, 675
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 4 cut(s) 205, 347, 399, 609
PspPI GGNCC 2 cut(s) 68, 354
PstNI CAGNNNCTG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 262
PteI GCGCGC 1 cut(s) 20
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
SacI GAGCTC 4 cut(s) 518, 639, 658, 675
SacII CCGCGG 1 cut(s) 210
SaqAI TTAA 7 cut(s) 294, 650, 677, 795, 818, 851, 874
SatI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
Sau3AI GATC 3 cut(s) 93, 262, 279
Sau96I GGNCC 2 cut(s) 68, 354
SchI GAGTC 2 cut(s) 353, 455
ScrFI CCNGG 4 cut(s) 71, 244, 335, 395
SduI GDGCHC 4 cut(s) 518, 639, 658, 675
SfaNI GCATC 2 cut(s) 316, 712
SfoI GGCGCC 2 cut(s) 205, 399
Sfr303I CCGCGG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 293, 592, 657
SmoI CTYRAG 3 cut(s) 293, 592, 657
SphI GCATGC 1 cut(s) 195
Sse9I AATT 5 cut(s) 647, 738, 773, 819, 866
SspDI GGCGCC 2 cut(s) 203, 397
SspMI CTAG 2 cut(s) 182, 545
SstI GAGCTC 4 cut(s) 518, 639, 658, 675
StyD4I CCNGG 4 cut(s) 69, 242, 333, 393
TaaI ACNGT 1 cut(s) 626
TaiI ACGT 1 cut(s) 813
TaqI TCGA 3 cut(s) 449, 476, 720
TasI AATT 5 cut(s) 647, 738, 773, 819, 866
TauI GCSGC 7 cut(s) 77, 156, 198, 201, 204, 209, 212
TfiI GAWTC 3 cut(s) 79, 112, 473
Tru1I TTAA 7 cut(s) 294, 650, 677, 795, 818, 851, 874
Tru9I TTAA 7 cut(s) 294, 650, 677, 795, 818, 851, 874
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 633, 660, 694
TspGWI ACGGA 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 293
XapI RAATTY 1 cut(s) 738
XceI RCATGY 2 cut(s) 195, 584
XspI CTAG 2 cut(s) 182, 545
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.