Rh1BG104300

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014791
Physical Location & Seq
Forward (+)
18175322 .. 18178866
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG104300.1

Sequence Viewer

Length: 702 bp
ATGCTCGGATTTCTCTGTGCGCGCCGGAAAACTTGGATTGTCAGCTCCCTTTCTTCCTTTGCTCACGGCCCGGCGGCGATTCACCAGAGCCGGATCGTTCACAGCCAGCTGATTCAGCACCAACTCGCTAACTTTTCCGGCGAAACCCCCCGCCGCCACCACCACAACAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCGGCGTCCATATGGCACGCCATTCTTCCATCGTCCGGTCTTTGGAGGCGACGGGATCTCCGTCGTCCTGCTATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTGGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTACTTTTTGGAGTTTGCAACTGCTTGGCGCCGATAGACTGGGGTATTACAACAACTAACGCAACCAACGATGAGGAGTCGAATAACAAAACTGAAGCTTGTGATTCGAAAAGCGTCATTACTTCTGATGGGAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCAGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCGTCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTTGTTGATGAGCTTTTAAAGAGGCGGGAGGAAACTGAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

6.83

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 397
AccII CGCG 2 cut(s) 22, 209
AclWI GGATC 2 cut(s) 101, 270
AcuI CTGAAG 2 cut(s) 483, 547
AcyI GRCGYC 3 cut(s) 204, 212, 398
AfiI CCNNNNNNNGG 2 cut(s) 242, 249
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 577
AluBI AGCT 9 cut(s) 45, 109, 181, 292, 467, 513, 634, 653, 670
AluI AGCT 9 cut(s) 45, 109, 181, 292, 467, 513, 634, 653, 670
Alw21I GWGCWC 3 cut(s) 515, 636, 655
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 2 cut(s) 101, 270
AlwNI CAGNNNCTG 1 cut(s) 174
AoxI GGCC 2 cut(s) 67, 353
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 5 cut(s) 22, 24, 173, 206, 400
AspS9I GGNCC 2 cut(s) 68, 354
AsuC2I CCSGG 2 cut(s) 71, 335
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 203, 397
BanII GRGCYC 3 cut(s) 515, 636, 655
Bbv12I GWGCWC 3 cut(s) 515, 636, 655
BbvI GCAGC 1 cut(s) 304
BccI CCATC 3 cut(s) 244, 491, 542
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 71, 335
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 2 cut(s) 182, 542
BfoI RGCGCY 3 cut(s) 174, 207, 401
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
BlsI GCNGC 8 cut(s) 76, 155, 197, 200, 203, 208, 211, 319
Bme1390I CCNGG 2 cut(s) 71, 335
BmgT120I GGNCC 2 cut(s) 68, 354
BmiI GGNNCC 4 cut(s) 205, 347, 399, 606
BmrFI CCNGG 2 cut(s) 71, 335
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 316
BmtI GCTAGC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 610, 639
BpuMI CCSGG 2 cut(s) 71, 335
BsaHI GRCGYC 3 cut(s) 204, 212, 398
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 249
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 242, 249
BseNI ACTGG 1 cut(s) 413
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 2 cut(s) 22, 209
BshFI GGCC 2 cut(s) 69, 355
BshNI GGYRCC 2 cut(s) 203, 397
BsiHKAI GWGCWC 3 cut(s) 515, 636, 655
BsiSI CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
BslI CCNNNNNNNGG 2 cut(s) 242, 249
BsmAI GTCTC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 69, 355
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 515, 636, 655
Bsp143I GATC 2 cut(s) 93, 262
BspANI GGCC 2 cut(s) 69, 355
BspFNI CGCG 2 cut(s) 22, 209
BspLI GGNNCC 4 cut(s) 205, 347, 399, 606
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 101, 270
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 2 cut(s) 203, 397
BspTI CTTAAG 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 207
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 2 cut(s) 93, 262
BssNI GRCGYC 3 cut(s) 204, 212, 398
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 3 cut(s) 204, 212, 398
BstAFI CTTAAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 22, 209
BstH2I RGCGCY 3 cut(s) 174, 207, 401
BstHHI GCGC 5 cut(s) 22, 24, 173, 206, 400
BstKTI GATC 2 cut(s) 96, 265
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 2 cut(s) 93, 262
BstMWI GCNNNNNNNGC 7 cut(s) 115, 201, 326, 335, 339, 352, 581
BstNSI RCATGY 2 cut(s) 195, 581
BstSCI CCNGG 2 cut(s) 69, 333
BstUI CGCG 2 cut(s) 22, 209
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 2 cut(s) 69, 355
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 5 cut(s) 22, 24, 173, 206, 400
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 68, 354
Cfr42I CCGCGG 1 cut(s) 210
CseI GACGC 2 cut(s) 201, 472
CviAII CATG 2 cut(s) 192, 578
DinI GGCGCC 2 cut(s) 205, 399
DpnI GATC 2 cut(s) 95, 264
DpnII GATC 2 cut(s) 93, 262
DraI TTTAAA 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 3 cut(s) 513, 634, 653
Eco24I GRGCYC 3 cut(s) 515, 636, 655
Eco53kI GAGCTC 3 cut(s) 513, 634, 653
Eco57I CTGAAG 2 cut(s) 483, 547
EcoICRI GAGCTC 3 cut(s) 513, 634, 653
EcoT38I GRGCYC 3 cut(s) 515, 636, 655
EgeI GGCGCC 2 cut(s) 205, 399
EheI GGCGCC 2 cut(s) 205, 399
FaeI CATG 2 cut(s) 195, 581
FaiI YATR 4 cut(s) 193, 218, 220, 579
FatI CATG 2 cut(s) 191, 577
FauI CCCGC 2 cut(s) 158, 675
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 3 cut(s) 515, 636, 655
Fsp4HI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
FspBI CTAG 2 cut(s) 182, 542
GlaI GCGC 5 cut(s) 21, 23, 172, 205, 399
GluI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
HaeII RGCGCY 3 cut(s) 174, 207, 401
HaeIII GGCC 2 cut(s) 69, 355
HapII CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
HgaI GACGC 2 cut(s) 201, 472
HhaI GCGC 5 cut(s) 22, 24, 173, 206, 400
Hin1I GRCGYC 3 cut(s) 204, 212, 398
Hin1II CATG 2 cut(s) 195, 581
Hin6I GCGC 5 cut(s) 20, 22, 171, 204, 398
HinP1I GCGC 5 cut(s) 20, 22, 171, 204, 398
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 5 cut(s) 79, 112, 359, 446, 473
HpaII CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 8, 496, 566, 627
Hpy188III TCNNGA 2 cut(s) 323, 611
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 2 cut(s) 261, 273
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 201, 326, 335, 339, 352, 581
Hsp92I GRCGYC 3 cut(s) 204, 212, 398
Hsp92II CATG 2 cut(s) 195, 581
HspAI GCGC 5 cut(s) 20, 22, 171, 204, 398
KasI GGCGCC 2 cut(s) 203, 397
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 2 cut(s) 93, 262
LmnI GCTCC 3 cut(s) 50, 351, 518
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 182, 542
MaeIII GTNAC 1 cut(s) 529
MalI GATC 2 cut(s) 95, 264
MboI GATC 2 cut(s) 93, 262
MboII GAAGA 3 cut(s) 45, 224, 553
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 515, 636, 655
MluCI AATT 1 cut(s) 644
Mly113I GGCGCC 2 cut(s) 204, 398
MlyI GAGTC 2 cut(s) 353, 455
MnlI CCTC 7 cut(s) 246, 295, 436, 595, 618, 672, 679
MseI TTAA 3 cut(s) 294, 647, 674
MspA1I CMGCKG 3 cut(s) 109, 209, 518
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 7 cut(s) 25, 71, 91, 138, 243, 335, 352
MspR9I CCNGG 2 cut(s) 71, 335
Mva1269I GAATGC 1 cut(s) 319
MvnI CGCG 2 cut(s) 22, 209
MwoI GCNNNNNNNGC 7 cut(s) 115, 201, 326, 335, 339, 352, 581
NarI GGCGCC 2 cut(s) 204, 398
NciI CCSGG 2 cut(s) 71, 335
NdeI CATATG 1 cut(s) 218
NdeII GATC 2 cut(s) 93, 262
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 195, 581
NlaIV GGNNCC 4 cut(s) 205, 347, 399, 606
NmeAIII GCCGAG 1 cut(s) 341
NspI RCATGY 2 cut(s) 195, 581
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 195
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 577
PcsI WCGNNNNNNNCGW 2 cut(s) 265, 435
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 3 cut(s) 79, 112, 473
PkrI GCNGC 8 cut(s) 76, 155, 197, 200, 203, 208, 211, 319
PleI GAGTC 2 cut(s) 353, 454
PluTI GGCGCC 2 cut(s) 207, 401
PpsI GAGTC 2 cut(s) 353, 454
PscI ACATGT 1 cut(s) 577
Psp124BI GAGCTC 3 cut(s) 515, 636, 655
PspN4I GGNNCC 4 cut(s) 205, 347, 399, 606
PspPI GGNCC 2 cut(s) 68, 354
PstNI CAGNNNCTG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 262
PteI GCGCGC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 109
SacI GAGCTC 3 cut(s) 515, 636, 655
SacII CCGCGG 1 cut(s) 210
SaqAI TTAA 3 cut(s) 294, 647, 674
SatI GCNGC 8 cut(s) 75, 154, 196, 199, 202, 207, 210, 318
Sau3AI GATC 2 cut(s) 93, 262
Sau96I GGNCC 2 cut(s) 68, 354
SchI GAGTC 2 cut(s) 353, 455
ScrFI CCNGG 2 cut(s) 71, 335
SduI GDGCHC 3 cut(s) 515, 636, 655
SfaNI GCATC 1 cut(s) 316
SfoI GGCGCC 2 cut(s) 205, 399
Sfr303I CCGCGG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 293, 589, 654
SmoI CTYRAG 3 cut(s) 293, 589, 654
SphI GCATGC 1 cut(s) 195
Sse9I AATT 1 cut(s) 644
SspDI GGCGCC 2 cut(s) 203, 397
SspMI CTAG 2 cut(s) 182, 542
SstI GAGCTC 3 cut(s) 515, 636, 655
StyD4I CCNGG 2 cut(s) 69, 333
TaaI ACNGT 1 cut(s) 623
TaqI TCGA 2 cut(s) 449, 476
TasI AATT 1 cut(s) 644
TauI GCSGC 7 cut(s) 77, 156, 198, 201, 204, 209, 212
TfiI GAWTC 3 cut(s) 79, 112, 473
Tru1I TTAA 3 cut(s) 294, 647, 674
Tru9I TTAA 3 cut(s) 294, 647, 674
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 630, 657
TspGWI ACGGA 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 293
XceI RCATGY 2 cut(s) 195, 581
XspI CTAG 2 cut(s) 182, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.