Rroxscaffold_4G00316990

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014791
Physical Location & Seq
Reverse (-)
41955660 .. 41962763
7104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316990.1

Sequence Viewer

Length: 981 bp
ATGGTGGAGTGGATAAGGTCGAAGGCGAGCTTCTTGCGTACGATCGCGACATCACCGTGGTCCAAGATCGCCGATGTTGTGTTCGCGCCGGCTGGTGGTTCTCGGTCAACGCTAGTCCGCAGCTCGTCGCAGCGTTTTTGGGGAATCGGCGGCGATGACGAGGGTATAAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCAGCGTCCATATGGCACGCTATTCTTCCCTCGTCCGGGCTTTGGAGGCGACGGGATCTCCGTCGCCCTGCGATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTGGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTCCTTTTTGGAGTTTGCAACTGCCTGGCGCCGATAGACTGGGGTATTACAACAACTAACGCAATCAATGATGAGGAGTCGAATAACAAAACTGAAGCTTGTGATTCGAAAAGCCTCATTACTTCTTCTGATGAGAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCAGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCATCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTTGTCGATGAGCTTTTAAAGAGGCGGGAGGAAACTGAATGGTTCATTGAAGGCGATTTCGATGCATATGTGAAGAGAATTCAACAGCCTTATGTTTGGGGAGGAGAACCTGAATTGCTTATGGCTTCTCATGTTAAAAAGACACCAATATCAGTCTACATGGTAGATAGAAGCTCAGGTGGTTTGGTAAACATAGCAAAATATGGTGAAGAATATGGGAAAGAAGAAGTGAAACCAATCAATGTTCTTTTTCATGGTTATGGTCACTATGACATCTTGGAGTCTTTCTCAGAACAGAGTCTGCAGAAAGTAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

326

Amino Acids

36.28

Weight (kDa)

5.39

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 183 - 305 4.7e-21 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 397
AccI GTMKAC 1 cut(s) 816
AccII CGCG 2 cut(s) 47, 86
AciI CCGC 8 cut(s) 118, 150, 195, 198, 201, 207, 519, 685
AclWI GGATC 2 cut(s) 270, 274
AcsI RAATTY 1 cut(s) 738
AcuI CTGAAG 2 cut(s) 483, 550
AcyI GRCGYC 2 cut(s) 204, 398
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 4 cut(s) 95, 242, 243, 249
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 580, 975
AgsI TTSAA 2 cut(s) 710, 743
AjnI CCWGG 1 cut(s) 393
Alw21I GWGCWC 3 cut(s) 518, 639, 658
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 2 cut(s) 270, 274
AlwNI CAGNNNCTG 1 cut(s) 961
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 4 cut(s) 120, 130, 209, 317
ApoI RAATTY 1 cut(s) 738
AspLEI GCGC 4 cut(s) 88, 173, 206, 400
AspS9I GGNCC 2 cut(s) 60, 354
AsuC2I CCSGG 2 cut(s) 244, 335
AsuHPI GGTGA 2 cut(s) 45, 878
AsuII TTCGAA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 60
BanI GGYRCC 2 cut(s) 203, 397
BanII GRGCYC 3 cut(s) 518, 639, 658
Bbv12I GWGCWC 3 cut(s) 518, 639, 658
BbvI GCAGC 4 cut(s) 132, 142, 221, 304
BccI CCATC 2 cut(s) 545, 633
BcgI CGANNNNNNTGC 4 cut(s) 16, 50, 704, 738
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 2 cut(s) 244, 335
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 3 cut(s) 113, 182, 545
BfmI CTRYAG 1 cut(s) 962
BfoI RGCGCY 3 cut(s) 174, 207, 401
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 9 cut(s) 121, 131, 151, 196, 199, 202, 207, 210, 318
BlsI GCNGC 9 cut(s) 122, 132, 152, 197, 200, 203, 208, 211, 319
Bme1390I CCNGG 3 cut(s) 244, 335, 395
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 60, 354
BmiI GGNNCC 5 cut(s) 205, 347, 371, 399, 609
BmrFI CCNGG 3 cut(s) 244, 335, 395
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 2 cut(s) 316, 712
BmtI GCTAGC 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 932, 964
Bpu10I CCTNAGC 1 cut(s) 835
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 613, 642
BpuMI CCSGG 2 cut(s) 244, 335
BsaHI GRCGYC 2 cut(s) 204, 398
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 242, 243, 249
Bse118I RCCGGY 2 cut(s) 88, 351
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 4 cut(s) 95, 242, 243, 249
BseMII CTCAG 2 cut(s) 849, 963
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 2 cut(s) 458, 777
BseXI GCAGC 4 cut(s) 132, 142, 221, 304
Bsh1236I CGCG 2 cut(s) 47, 86
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 2 cut(s) 203, 397
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 518, 639, 658
BsiSI CCGG 4 cut(s) 89, 243, 335, 352
BsiWI CGTACG 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 95, 242, 243, 249
BsmAI GTCTC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 355
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 518, 639, 658
Bsp143I GATC 4 cut(s) 42, 66, 262, 279
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 8 cut(s) 118, 150, 195, 198, 201, 207, 519, 685
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 848, 962
BspFNI CGCG 2 cut(s) 47, 86
BspLI GGNNCC 5 cut(s) 205, 347, 371, 399, 609
BspMAI CTGCAG 1 cut(s) 966
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 2 cut(s) 270, 274
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 2 cut(s) 203, 397
BspTI CTTAAG 1 cut(s) 293
BsrFI RCCGGY 2 cut(s) 88, 351
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 2 cut(s) 88, 351
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 4 cut(s) 42, 66, 262, 279
BssNI GRCGYC 2 cut(s) 204, 398
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 2 cut(s) 569, 728
BstACI GRCGYC 2 cut(s) 204, 398
BstAFI CTTAAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 835, 949
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 47, 86
BstH2I RGCGCY 3 cut(s) 174, 207, 401
BstHHI GCGC 4 cut(s) 88, 173, 206, 400
BstKTI GATC 4 cut(s) 45, 69, 265, 282
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 4 cut(s) 42, 66, 262, 279
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 3 cut(s) 195, 584, 979
BstSCI CCNGG 3 cut(s) 242, 333, 393
BstSFI CTRYAG 1 cut(s) 962
BstUI CGCG 2 cut(s) 47, 86
BstV1I GCAGC 4 cut(s) 132, 142, 221, 304
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 331
BtuMI TCGCGA 1 cut(s) 47
CaiI CAGNNNCTG 1 cut(s) 961
CfoI GCGC 4 cut(s) 88, 173, 206, 400
Cfr10I RCCGGY 2 cut(s) 88, 351
Cfr13I GGNCC 2 cut(s) 60, 354
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 39
CviAII CATG 6 cut(s) 192, 581, 791, 820, 914, 976
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 835, 949
DinI GGCGCC 2 cut(s) 205, 399
DpnI GATC 4 cut(s) 44, 68, 264, 281
DpnII GATC 4 cut(s) 42, 66, 262, 279
DraI TTTAAA 1 cut(s) 678
Eam1104I CTCTTC 2 cut(s) 569, 728
EarI CTCTTC 2 cut(s) 569, 728
Ecl136II GAGCTC 3 cut(s) 516, 637, 656
Eco24I GRGCYC 3 cut(s) 518, 639, 658
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 3 cut(s) 516, 637, 656
Eco57I CTGAAG 2 cut(s) 483, 550
EcoICRI GAGCTC 3 cut(s) 516, 637, 656
EcoRI GAATTC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 3 cut(s) 518, 639, 658
EgeI GGCGCC 2 cut(s) 205, 399
EheI GGCGCC 2 cut(s) 205, 399
FaeI CATG 6 cut(s) 195, 584, 794, 823, 917, 979
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 6 cut(s) 191, 580, 790, 819, 913, 975
FauI CCCGC 1 cut(s) 678
FauNDI CATATG 2 cut(s) 218, 727
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 9 cut(s) 121, 131, 151, 196, 199, 202, 207, 210, 318
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 3 cut(s) 518, 639, 658
Fsp4HI GCNGC 9 cut(s) 121, 131, 151, 196, 199, 202, 207, 210, 318
FspBI CTAG 3 cut(s) 113, 182, 545
GlaI GCGC 4 cut(s) 87, 172, 205, 399
GluI GCNGC 9 cut(s) 121, 131, 151, 196, 199, 202, 207, 210, 318
HaeII RGCGCY 3 cut(s) 174, 207, 401
HaeIII GGCC 1 cut(s) 355
HapII CCGG 4 cut(s) 89, 243, 335, 352
HgaI GACGC 1 cut(s) 201
HhaI GCGC 4 cut(s) 88, 173, 206, 400
Hin1I GRCGYC 2 cut(s) 204, 398
Hin1II CATG 6 cut(s) 195, 584, 794, 823, 917, 979
Hin6I GCGC 4 cut(s) 86, 171, 204, 398
HinP1I GCGC 4 cut(s) 86, 171, 204, 398
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 6 cut(s) 144, 359, 446, 473, 941, 958
HpaII CCGG 4 cut(s) 89, 243, 335, 352
HphI GGTGA 2 cut(s) 45, 878
Hpy166II GTNNAC 4 cut(s) 108, 817, 850, 973
Hpy188I TCNGA 4 cut(s) 499, 569, 630, 952
Hpy188III TCNNGA 3 cut(s) 46, 323, 614
Hpy8I GTNNAC 4 cut(s) 108, 817, 850, 973
Hpy99I CGWCG 3 cut(s) 130, 261, 273
HpyAV CCTTC 2 cut(s) 16, 704
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 387, 725, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
HpyF3I CTNAG 2 cut(s) 835, 949
Hsp92I GRCGYC 2 cut(s) 204, 398
Hsp92II CATG 6 cut(s) 195, 584, 794, 823, 917, 979
HspAI GCGC 4 cut(s) 86, 171, 204, 398
KasI GGCGCC 2 cut(s) 203, 397
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 42, 66, 262, 279
LmnI GCTCC 3 cut(s) 351, 375, 521
Lsp1109I GCAGC 4 cut(s) 132, 142, 221, 304
LweI GCATC 2 cut(s) 316, 712
MaeI CTAG 3 cut(s) 113, 182, 545
MaeIII GTNAC 2 cut(s) 532, 923
MalI GATC 4 cut(s) 44, 68, 264, 281
MboI GATC 4 cut(s) 42, 66, 262, 279
MboII GAAGA 6 cut(s) 224, 486, 556, 745, 881, 896
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 518, 639, 658
MluCI AATT 3 cut(s) 647, 738, 773
Mly113I GGCGCC 2 cut(s) 204, 398
MlyI GAGTC 4 cut(s) 353, 455, 950, 967
Mph1103I ATGCAT 1 cut(s) 727
MroNI GCCGGC 1 cut(s) 88
MseI TTAA 4 cut(s) 294, 650, 677, 795
MslI CAYNNNNRTG 2 cut(s) 55, 918
MspA1I CMGCKG 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 4 cut(s) 89, 243, 335, 352
MspR9I CCNGG 3 cut(s) 244, 335, 395
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 2 cut(s) 47, 86
MwoI GCNNNNNNNGC 7 cut(s) 201, 253, 326, 335, 339, 352, 584
NaeI GCCGGC 1 cut(s) 90
NarI GGCGCC 2 cut(s) 204, 398
NciI CCSGG 2 cut(s) 244, 335
NdeI CATATG 2 cut(s) 218, 727
NdeII GATC 4 cut(s) 42, 66, 262, 279
NgoMIV GCCGGC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 6 cut(s) 195, 584, 794, 823, 917, 979
NlaIV GGNNCC 5 cut(s) 205, 347, 371, 399, 609
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 923
NruI TCGCGA 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 3 cut(s) 195, 584, 979
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 195
PciI ACATGT 2 cut(s) 580, 975
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PctI GAATGC 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 144, 473
Pfl23II CGTACG 1 cut(s) 38
PkrI GCNGC 9 cut(s) 122, 132, 152, 197, 200, 203, 208, 211, 319
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 4 cut(s) 353, 454, 949, 966
PluTI GGCGCC 2 cut(s) 207, 401
PpsI GAGTC 4 cut(s) 353, 454, 949, 966
PscI ACATGT 2 cut(s) 580, 975
Psp124BI GAGCTC 3 cut(s) 518, 639, 658
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspLI CGTACG 1 cut(s) 38
PspN4I GGNNCC 5 cut(s) 205, 347, 371, 399, 609
PspPI GGNCC 2 cut(s) 60, 354
PstI CTGCAG 1 cut(s) 966
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 262
PvuI CGATCG 1 cut(s) 45
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 2 cut(s) 55, 918
SacI GAGCTC 3 cut(s) 518, 639, 658
SaqAI TTAA 4 cut(s) 294, 650, 677, 795
SatI GCNGC 9 cut(s) 121, 131, 151, 196, 199, 202, 207, 210, 318
Sau3AI GATC 4 cut(s) 42, 66, 262, 279
Sau96I GGNCC 2 cut(s) 60, 354
SchI GAGTC 4 cut(s) 353, 455, 950, 967
ScrFI CCNGG 3 cut(s) 244, 335, 395
SduI GDGCHC 3 cut(s) 518, 639, 658
SfaNI GCATC 2 cut(s) 316, 712
SfcI CTRYAG 1 cut(s) 962
SfoI GGCGCC 2 cut(s) 205, 399
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 55, 918
SmlI CTYRAG 3 cut(s) 293, 592, 657
SmoI CTYRAG 3 cut(s) 293, 592, 657
SphI GCATGC 1 cut(s) 195
Sse9I AATT 3 cut(s) 647, 738, 773
SsiI CCGC 8 cut(s) 118, 150, 195, 198, 201, 207, 519, 685
SspDI GGCGCC 2 cut(s) 203, 397
SspMI CTAG 3 cut(s) 113, 182, 545
SstI GAGCTC 3 cut(s) 518, 639, 658
StyD4I CCNGG 3 cut(s) 242, 333, 393
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 5 cut(s) 20, 449, 476, 666, 720
TaqII GACCGA 1 cut(s) 93
TasI AATT 3 cut(s) 647, 738, 773
TauI GCSGC 5 cut(s) 153, 198, 201, 204, 209
TfiI GAWTC 2 cut(s) 144, 473
Tru1I TTAA 4 cut(s) 294, 650, 677, 795
Tru9I TTAA 4 cut(s) 294, 650, 677, 795
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 4 cut(s) 120, 130, 209, 317
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 4 cut(s) 633, 660, 694, 902
TspGWI ACGGA 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 738
XceI RCATGY 3 cut(s) 195, 584, 979
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 113, 182, 545
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.