Rh1AG136900

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014791
Physical Location & Seq
Forward (+)
25914886 .. 25918296
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG136900.1

Sequence Viewer

Length: 708 bp
ATGCTCGGATTTCTCTGTGCGCGCCGGAAAACTTGGATTGTCAGCTCCCTTTCTTCTTTTGCTCACGGCCCGGCGGCGATTCACCAGAGCCGGATCGTCCAAAACCCGTTGATTCAGCACCAACTCGCTAACTTTTCCGGCGAAGCCCCCCGCCGCCGCCACCACCACAACAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCGGCGTCCATATGGCACGCTATTCTTCCCTCGTCCGGGCTTTGGAGGCGACGGGATCTCCGTCGTCCTGCGATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTCGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTACTTTTTGGAGTTTGCAACTGCCTGGCGCCGATAGACTGGGGTATTACAACAACTAACGCAACCAATGATGAGGAGTCGAATAACAAAACTGAACCTTGTGATTCGAAAAGCCTCATTACTTCTTCTGATGAGAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCAGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCGTCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTTGTCGATGAGCTCTTAAAGAGGCGGGAGGAAACTGAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

235

Amino Acids

26.22

Weight (kDa)

6.79

Isoelectric Point (pI)

66.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 400
AccII CGCG 2 cut(s) 22, 212
AclWI GGATC 3 cut(s) 101, 273, 277
AcuI CTGAAG 1 cut(s) 553
AcyI GRCGYC 3 cut(s) 207, 215, 401
AfiI CCNNNNNNNGG 3 cut(s) 245, 246, 252
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 583
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 7 cut(s) 45, 184, 295, 519, 640, 659, 676
AluI AGCT 7 cut(s) 45, 184, 295, 519, 640, 659, 676
Alw21I GWGCWC 4 cut(s) 521, 642, 661, 678
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 3 cut(s) 101, 273, 277
AlwNI CAGNNNCTG 1 cut(s) 177
AoxI GGCC 2 cut(s) 67, 356
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 5 cut(s) 22, 24, 176, 209, 403
AspS9I GGNCC 2 cut(s) 68, 357
AsuC2I CCSGG 3 cut(s) 71, 247, 338
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 547
BanI GGYRCC 2 cut(s) 206, 400
BanII GRGCYC 4 cut(s) 521, 642, 661, 678
Bbv12I GWGCWC 4 cut(s) 521, 642, 661, 678
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 3 cut(s) 71, 247, 338
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 185, 548
BfoI RGCGCY 3 cut(s) 177, 210, 404
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
BlsI GCNGC 9 cut(s) 76, 155, 158, 200, 203, 206, 211, 214, 322
Bme1390I CCNGG 4 cut(s) 71, 247, 338, 398
BmgT120I GGNCC 2 cut(s) 68, 357
BmiI GGNNCC 4 cut(s) 208, 350, 402, 612
BmrFI CCNGG 4 cut(s) 71, 247, 338, 398
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 421
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 616, 645
BpuMI CCSGG 3 cut(s) 71, 247, 338
BsaHI GRCGYC 3 cut(s) 207, 215, 401
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 246, 252
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 245, 246, 252
BseNI ACTGG 1 cut(s) 416
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 2 cut(s) 22, 212
BshFI GGCC 2 cut(s) 69, 358
BshNI GGYRCC 2 cut(s) 206, 400
BsiHKAI GWGCWC 4 cut(s) 521, 642, 661, 678
BsiSI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
BslI CCNNNNNNNGG 3 cut(s) 245, 246, 252
BsmAI GTCTC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 69, 358
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 4 cut(s) 521, 642, 661, 678
Bsp143I GATC 3 cut(s) 93, 265, 282
BspANI GGCC 2 cut(s) 69, 358
BspFNI CGCG 2 cut(s) 22, 212
BspLI GGNNCC 4 cut(s) 208, 350, 402, 612
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 3 cut(s) 101, 273, 277
BspT104I TTCGAA 1 cut(s) 479
BspT107I GGYRCC 2 cut(s) 206, 400
BspTI CTTAAG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 210
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 3 cut(s) 93, 265, 282
BssNI GRCGYC 3 cut(s) 207, 215, 401
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 1 cut(s) 572
BstACI GRCGYC 3 cut(s) 207, 215, 401
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 479
BstDSI CCRYGG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 22, 212
BstH2I RGCGCY 3 cut(s) 177, 210, 404
BstHHI GCGC 5 cut(s) 22, 24, 176, 209, 403
BstKTI GATC 3 cut(s) 96, 268, 285
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 3 cut(s) 93, 265, 282
BstMWI GCNNNNNNNGC 7 cut(s) 204, 256, 329, 338, 342, 355, 587
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 2 cut(s) 198, 587
BstSCI CCNGG 4 cut(s) 69, 245, 336, 396
BstUI CGCG 2 cut(s) 22, 212
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 69, 358
BtgI CCRYGG 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 177
CfoI GCGC 5 cut(s) 22, 24, 176, 209, 403
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 68, 357
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 1 cut(s) 204
CviAII CATG 2 cut(s) 195, 584
DinI GGCGCC 2 cut(s) 208, 402
DpnI GATC 3 cut(s) 95, 267, 284
DpnII GATC 3 cut(s) 93, 265, 282
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Ecl136II GAGCTC 4 cut(s) 519, 640, 659, 676
Eco24I GRGCYC 4 cut(s) 521, 642, 661, 678
Eco53kI GAGCTC 4 cut(s) 519, 640, 659, 676
Eco57I CTGAAG 1 cut(s) 553
EcoICRI GAGCTC 4 cut(s) 519, 640, 659, 676
EcoRII CCWGG 1 cut(s) 396
EcoT38I GRGCYC 4 cut(s) 521, 642, 661, 678
EgeI GGCGCC 2 cut(s) 208, 402
EheI GGCGCC 2 cut(s) 208, 402
FaeI CATG 2 cut(s) 198, 587
FaiI YATR 4 cut(s) 196, 221, 223, 585
FatI CATG 2 cut(s) 194, 583
FauI CCCGC 2 cut(s) 158, 681
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
FriOI GRGCYC 4 cut(s) 521, 642, 661, 678
Fsp4HI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
FspBI CTAG 2 cut(s) 185, 548
GlaI GCGC 5 cut(s) 21, 23, 175, 208, 402
GluI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
HaeII RGCGCY 3 cut(s) 177, 210, 404
HaeIII GGCC 2 cut(s) 69, 358
HapII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HgaI GACGC 1 cut(s) 204
HhaI GCGC 5 cut(s) 22, 24, 176, 209, 403
Hin1I GRCGYC 3 cut(s) 207, 215, 401
Hin1II CATG 2 cut(s) 198, 587
Hin6I GCGC 5 cut(s) 20, 22, 174, 207, 401
HinP1I GCGC 5 cut(s) 20, 22, 174, 207, 401
HinfI GANTC 5 cut(s) 79, 112, 362, 449, 476
HpaII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 8, 502, 572, 633
Hpy188III TCNNGA 2 cut(s) 326, 617
Hpy99I CGWCG 2 cut(s) 264, 276
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 7 cut(s) 204, 256, 329, 338, 342, 355, 587
Hsp92I GRCGYC 3 cut(s) 207, 215, 401
Hsp92II CATG 2 cut(s) 198, 587
HspAI GCGC 5 cut(s) 20, 22, 174, 207, 401
KasI GGCGCC 2 cut(s) 206, 400
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 3 cut(s) 93, 265, 282
LmnI GCTCC 3 cut(s) 50, 354, 524
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 185, 548
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 95, 267, 284
MboI GATC 3 cut(s) 93, 265, 282
MboII GAAGA 4 cut(s) 45, 227, 489, 559
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 4 cut(s) 521, 642, 661, 678
MluCI AATT 1 cut(s) 650
Mly113I GGCGCC 2 cut(s) 207, 401
MlyI GAGTC 2 cut(s) 356, 458
MnlI CCTC 9 cut(s) 249, 250, 298, 439, 497, 601, 624, 678, 685
MseI TTAA 3 cut(s) 297, 653, 680
MspA1I CMGCKG 2 cut(s) 212, 524
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
MspR9I CCNGG 4 cut(s) 71, 247, 338, 398
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 22, 212
MwoI GCNNNNNNNGC 7 cut(s) 204, 256, 329, 338, 342, 355, 587
NarI GGCGCC 2 cut(s) 207, 401
NciI CCSGG 3 cut(s) 71, 247, 338
NdeI CATATG 1 cut(s) 221
NdeII GATC 3 cut(s) 93, 265, 282
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 198, 587
NlaIV GGNNCC 4 cut(s) 208, 350, 402, 612
NmeAIII GCCGAG 1 cut(s) 344
NspI RCATGY 2 cut(s) 198, 587
NspV TTCGAA 1 cut(s) 479
PaeI GCATGC 1 cut(s) 198
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 3 cut(s) 79, 112, 476
PkrI GCNGC 9 cut(s) 76, 155, 158, 200, 203, 206, 211, 214, 322
PleI GAGTC 2 cut(s) 356, 457
PluTI GGCGCC 2 cut(s) 210, 404
PpsI GAGTC 2 cut(s) 356, 457
PscI ACATGT 1 cut(s) 583
Psp124BI GAGCTC 4 cut(s) 521, 642, 661, 678
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 208, 350, 402, 612
PspPI GGNCC 2 cut(s) 68, 357
PstNI CAGNNNCTG 1 cut(s) 177
PsuI RGATCY 1 cut(s) 265
PteI GCGCGC 1 cut(s) 20
SacI GAGCTC 4 cut(s) 521, 642, 661, 678
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 297, 653, 680
SatI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
Sau3AI GATC 3 cut(s) 93, 265, 282
Sau96I GGNCC 2 cut(s) 68, 357
SchI GAGTC 2 cut(s) 356, 458
ScrFI CCNGG 4 cut(s) 71, 247, 338, 398
SduI GDGCHC 4 cut(s) 521, 642, 661, 678
SetI ASST 9 cut(s) 47, 186, 297, 472, 521, 616, 642, 661, 678
SfaNI GCATC 1 cut(s) 319
SfoI GGCGCC 2 cut(s) 208, 402
Sfr303I CCGCGG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 296, 595, 660
SmoI CTYRAG 3 cut(s) 296, 595, 660
SphI GCATGC 1 cut(s) 198
Sse9I AATT 1 cut(s) 650
SspDI GGCGCC 2 cut(s) 206, 400
SspMI CTAG 2 cut(s) 185, 548
SstI GAGCTC 4 cut(s) 521, 642, 661, 678
StyD4I CCNGG 4 cut(s) 69, 245, 336, 396
TaaI ACNGT 1 cut(s) 629
TaqI TCGA 4 cut(s) 327, 452, 479, 669
TasI AATT 1 cut(s) 650
TauI GCSGC 8 cut(s) 77, 156, 159, 201, 204, 207, 212, 215
TfiI GAWTC 3 cut(s) 79, 112, 476
Tru1I TTAA 3 cut(s) 297, 653, 680
Tru9I TTAA 3 cut(s) 297, 653, 680
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 636, 663
TspGWI ACGGA 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 296
XceI RCATGY 2 cut(s) 198, 587
XspI CTAG 2 cut(s) 185, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.