Prupe.2G089600_v2.0.a1

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014791
Physical Location & Seq
Forward (+)
14215937 .. 14219772
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G089600.1

Sequence Viewer

Length: 990 bp
ATGCTCGGATTTCTTTGCGCGCGCCGCAAGACTTGGATCGTCAGCTCCCTCTCGTCCTTCGCTCACGGCTCGGCGGCGGCTCACCAGAGCCGACTCCTCCAAGCCCACACCCTTCCCCTCATTCATCAGCAAATCGCTAGCTTCTCCTGCGGTTTTGAGACTCGGCGCCACCACCACTCGAGCGCGTGCCAGCTCGGCTCGGCTTGCGGCACCGGCGCGGCATCGATATGGCACGCCTTGCTCCCTTCGTCCTGCAACCGGAGATCTCGAGATCTCCGCCGGCCGGCGATCCACTACGAGCTTAAGGGAGAGGGGTCTTGGAACGCCGCTTGGGACGCACGCCCAGCTCGCTGGCTCCACCGTCCCGACTCGGCTTGGCTCCTCTTCGGCGTCTGCAACTGCCTAGCCCCGATCGACTGGGCTGACGACTCTACTCCCGACGGAAACGACGGCGTTTCGAACGAGAATGCTGAGAGTTTTGATTCGAAATGCTCAGCCGCTCCCGATCAGAATAACATTGATAGCTCCGCTGATTACAGAGTTACAGGGGTGCCAGCCGATGGTCGATGCCTATTCAGAGCGATAGCACACGTGGCTTGCTTGAGAAATGGGGAGGAAGCCCCTGATGAGAATCGTCAGAGAGATCTCGCTGATGAATTAAGAGCTCAAGTTGTAGACGAGCTCTTAAAGAGGCGGGAGGAAACAGAATGGTTCATCGAAGGTGATTTTGATGCGTATGTGAAGAGACTTCAACAGCCTTATGTTTGGGGTGGAGAACCTGAGTTGCTGATGGCTTCTCATGTTTTAAAGACACCAATATCTGTCTTCATGATAGATAGAAGCTCGGCTGGTTTGGTTAACATAGCAAATTATGGTGAAGAGTATCGGAAAGAAGAGGAGAAACCAATCAATGTTCTCTTTCATGGATATGGACACTATGACATCTTGGATTCTTTCTCAGAACAGAGTCTGAAGAAACTAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

330

Amino Acids

36.84

Weight (kDa)

5.86

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 165, 209, 550
AccB7I CCANNNNNTGG 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 675
AccII CGCG 4 cut(s) 20, 22, 185, 218
AclWI GGATC 2 cut(s) 44, 283
AcoI YGGCCR 1 cut(s) 281
AcvI CACGTG 1 cut(s) 592
AcyI GRCGYC 2 cut(s) 166, 390
AfiI CCNNNNNNNGG 3 cut(s) 258, 283, 560
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 2 cut(s) 589, 984
AgsI TTSAA 1 cut(s) 752
AluBI AGCT 9 cut(s) 45, 141, 193, 301, 347, 525, 665, 682, 843
AluI AGCT 9 cut(s) 45, 141, 193, 301, 347, 525, 665, 682, 843
Alw21I GWGCWC 2 cut(s) 667, 684
Alw26I GTCTC 2 cut(s) 152, 739
AlwI GGATC 2 cut(s) 44, 283
AlwNI CAGNNNCTG 1 cut(s) 970
Ama87I CYCGRG 2 cut(s) 178, 267
AoxI GGCC 1 cut(s) 281
AspLEI GCGC 6 cut(s) 20, 22, 24, 168, 185, 218
AsuHPI GGTGA 3 cut(s) 74, 734, 887
AsuII TTCGAA 2 cut(s) 458, 485
AsuNHI GCTAGC 1 cut(s) 137
AvaI CYCGRG 2 cut(s) 178, 267
BanI GGYRCC 3 cut(s) 165, 209, 550
BanII GRGCYC 2 cut(s) 667, 684
BbrPI CACGTG 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 817
Bbv12I GWGCWC 2 cut(s) 667, 684
BccI CCATC 2 cut(s) 554, 784
BceAI ACGGC 2 cut(s) 82, 466
BcoDI GTCTC 2 cut(s) 152, 739
BfaI CTAG 2 cut(s) 138, 404
BfoI RGCGCY 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 195
BglII AGATCT 3 cut(s) 263, 271, 643
BisI GCNGC 7 cut(s) 25, 75, 78, 208, 219, 327, 498
BlpI GCTNAGC 1 cut(s) 493
BlsI GCNGC 7 cut(s) 26, 76, 79, 209, 220, 328, 499
BmeT110I CYCGRG 2 cut(s) 178, 267
BmiI GGNNCC 5 cut(s) 167, 211, 356, 380, 552
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 3 cut(s) 230, 557, 721
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 817
Bpu1102I GCTNAGC 1 cut(s) 493
Bpu14I TTCGAA 2 cut(s) 458, 485
BpuEI CTTGAG 2 cut(s) 622, 651
Bsa29I ATCGAT 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 592
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 166, 390
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 283, 560
Bse118I RCCGGY 3 cut(s) 212, 279, 283
Bse1I ACTGG 1 cut(s) 422
Bse8I GATNNNNATC 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 224
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 258, 283, 560
BseMII CTCAG 4 cut(s) 462, 507, 771, 972
BseNI ACTGG 1 cut(s) 422
BsePI GCGCGC 2 cut(s) 18, 20
BseRI GAGGAG 3 cut(s) 86, 371, 911
BseX3I CGGCCG 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 343
Bsh1236I CGCG 4 cut(s) 20, 22, 185, 218
Bsh1285I CGRYCG 2 cut(s) 284, 414
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 3 cut(s) 165, 209, 550
BshVI ATCGAT 1 cut(s) 224
BsiEI CGRYCG 2 cut(s) 284, 414
BsiHKAI GWGCWC 2 cut(s) 667, 684
BsiHKCI CYCGRG 2 cut(s) 178, 267
BsiSI CCGG 4 cut(s) 213, 259, 280, 284
BslFI GGGAC 2 cut(s) 347, 348
BslI CCNNNNNNNGG 3 cut(s) 258, 283, 560
BsmAI GTCTC 2 cut(s) 152, 739
BsmFI GGGAC 2 cut(s) 347, 348
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 2 cut(s) 178, 267
Bsp119I TTCGAA 2 cut(s) 458, 485
Bsp1286I GDGCHC 2 cut(s) 667, 684
Bsp143I GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
Bsp1720I GCTNAGC 1 cut(s) 493
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 4 cut(s) 463, 506, 772, 971
BspDI ATCGAT 1 cut(s) 224
BspFNI CGCG 4 cut(s) 20, 22, 185, 218
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 5 cut(s) 167, 211, 356, 380, 552
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 2 cut(s) 44, 283
BspT104I TTCGAA 2 cut(s) 458, 485
BspT107I GGYRCC 3 cut(s) 165, 209, 550
BspTI CTTAAG 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 500
BsrFI RCCGGY 3 cut(s) 212, 279, 283
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 3 cut(s) 212, 279, 283
BssHII GCGCGC 2 cut(s) 18, 20
BssMI GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
BssNI GRCGYC 2 cut(s) 166, 390
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 4 cut(s) 389, 737, 873, 888
BstACI GRCGYC 2 cut(s) 166, 390
BstAFI CTTAAG 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 592
BstBI TTCGAA 2 cut(s) 458, 485
BstDEI CTNAG 4 cut(s) 471, 493, 780, 958
BstFNI CGCG 4 cut(s) 20, 22, 185, 218
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 6 cut(s) 20, 22, 24, 168, 185, 218
BstKTI GATC 7 cut(s) 39, 266, 274, 291, 414, 508, 646
BstMAI GTCTC 2 cut(s) 152, 739
BstMBI GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
BstMCI CGRYCG 2 cut(s) 284, 414
BstNSI RCATGY 1 cut(s) 988
BstUI CGCG 4 cut(s) 20, 22, 185, 218
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 3 cut(s) 263, 271, 643
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 3 cut(s) 263, 271, 643
BstZI CGGCCG 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 224
BsuRI GGCC 1 cut(s) 283
BsuTUI ATCGAT 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 970
CciI TCATGA 1 cut(s) 828
CfoI GCGC 6 cut(s) 20, 22, 24, 168, 185, 218
Cfr10I RCCGGY 3 cut(s) 212, 279, 283
ClaI ATCGAT 1 cut(s) 224
CseI GACGC 2 cut(s) 344, 379
CviAII CATG 4 cut(s) 800, 829, 923, 985
DdeI CTNAG 4 cut(s) 471, 493, 780, 958
DinI GGCGCC 1 cut(s) 167
DpnI GATC 7 cut(s) 38, 265, 273, 290, 413, 507, 645
DpnII GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 1 cut(s) 281
EagI CGGCCG 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 389, 737, 873, 888
EarI CTCTTC 4 cut(s) 389, 737, 873, 888
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 2 cut(s) 665, 682
EclXI CGGCCG 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 667, 684
Eco52I CGGCCG 1 cut(s) 281
Eco53kI GAGCTC 2 cut(s) 665, 682
Eco72I CACGTG 1 cut(s) 592
Eco88I CYCGRG 2 cut(s) 178, 267
EcoICRI GAGCTC 2 cut(s) 665, 682
EcoT38I GRGCYC 2 cut(s) 667, 684
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
FaeI CATG 4 cut(s) 803, 832, 926, 988
FaqI GGGAC 2 cut(s) 347, 348
FatI CATG 4 cut(s) 799, 828, 922, 984
FauI CCCGC 1 cut(s) 687
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 7 cut(s) 25, 75, 78, 208, 219, 327, 498
FriOI GRGCYC 2 cut(s) 667, 684
Fsp4HI GCNGC 7 cut(s) 25, 75, 78, 208, 219, 327, 498
FspBI CTAG 2 cut(s) 138, 404
GlaI GCGC 6 cut(s) 19, 21, 23, 167, 184, 217
GluI GCNGC 7 cut(s) 25, 75, 78, 208, 219, 327, 498
GsaI CCCAGC 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 283
HapII CCGG 4 cut(s) 213, 259, 280, 284
HgaI GACGC 2 cut(s) 344, 379
HhaI GCGC 6 cut(s) 20, 22, 24, 168, 185, 218
Hin1I GRCGYC 2 cut(s) 166, 390
Hin1II CATG 4 cut(s) 803, 832, 926, 988
Hin6I GCGC 6 cut(s) 18, 20, 22, 166, 183, 216
HinP1I GCGC 6 cut(s) 18, 20, 22, 166, 183, 216
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 8 cut(s) 93, 160, 368, 428, 482, 631, 950, 967
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 4 cut(s) 213, 259, 280, 284
HphI GGTGA 3 cut(s) 74, 734, 887
Hpy166II GTNNAC 2 cut(s) 676, 859
Hpy188I TCNGA 7 cut(s) 8, 510, 578, 639, 888, 961, 972
Hpy188III TCNNGA 6 cut(s) 267, 269, 365, 437, 503, 829
Hpy8I GTNNAC 2 cut(s) 676, 859
Hpy99I CGWCG 2 cut(s) 443, 452
HpyAV CCTTC 4 cut(s) 67, 122, 255, 713
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 2 cut(s) 255, 396
HpyF3I CTNAG 4 cut(s) 471, 493, 780, 958
HpySE526I ACGT 1 cut(s) 591
Hsp92I GRCGYC 2 cut(s) 166, 390
Hsp92II CATG 4 cut(s) 803, 832, 926, 988
HspAI GCGC 6 cut(s) 18, 20, 22, 166, 183, 216
KasI GGCGCC 1 cut(s) 165
KroI GCCGGC 2 cut(s) 279, 283
KroNI GCCGGC 2 cut(s) 281, 285
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
LmnI GCTCC 6 cut(s) 50, 246, 360, 384, 505, 530
LweI GCATC 3 cut(s) 230, 557, 721
MaeI CTAG 2 cut(s) 138, 404
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 541
MalI GATC 7 cut(s) 38, 265, 273, 290, 413, 507, 645
MbiI CCGCTC 1 cut(s) 500
MboI GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
MboII GAAGA 6 cut(s) 376, 754, 817, 890, 905, 985
MflI RGATCY 3 cut(s) 263, 271, 643
MhlI GDGCHC 2 cut(s) 667, 684
MluCI AATT 2 cut(s) 656, 868
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 5 cut(s) 87, 154, 362, 422, 976
MnlI CCTC 9 cut(s) 59, 107, 128, 304, 392, 607, 684, 691, 889
MroNI GCCGGC 2 cut(s) 279, 283
MseI TTAA 5 cut(s) 303, 659, 686, 806, 858
MslI CAYNNNNRTG 2 cut(s) 226, 927
MspA1I CMGCKG 1 cut(s) 530
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 4 cut(s) 213, 259, 280, 284
Mva1269I GAATGC 1 cut(s) 472
MvnI CGCG 4 cut(s) 20, 22, 185, 218
NaeI GCCGGC 2 cut(s) 281, 285
NarI GGCGCC 1 cut(s) 166
NdeII GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
NgoMIV GCCGGC 2 cut(s) 279, 283
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 803, 832, 926, 988
NlaIV GGNNCC 5 cut(s) 167, 211, 356, 380, 552
NmeAIII GCCGAG 6 cut(s) 50, 142, 174, 179, 350, 824
NspI RCATGY 1 cut(s) 988
NspV TTCGAA 2 cut(s) 458, 485
PaeR7I CTCGAG 2 cut(s) 178, 267
PagI TCATGA 1 cut(s) 828
PauI GCGCGC 2 cut(s) 18, 20
PciI ACATGT 1 cut(s) 984
PctI GAATGC 1 cut(s) 472
PdiI GCCGGC 2 cut(s) 281, 285
PfeI GAWTC 3 cut(s) 482, 631, 950
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 7 cut(s) 26, 76, 79, 209, 220, 328, 499
Ple19I CGATCG 1 cut(s) 414
PleI GAGTC 5 cut(s) 87, 154, 362, 422, 975
PluTI GGCGCC 1 cut(s) 169
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 5 cut(s) 87, 154, 362, 422, 975
Ppu21I YACGTR 1 cut(s) 592
PscI ACATGT 1 cut(s) 984
Psp124BI GAGCTC 2 cut(s) 667, 684
PspCI CACGTG 1 cut(s) 592
PspFI CCCAGC 1 cut(s) 343
PspN4I GGNNCC 5 cut(s) 167, 211, 356, 380, 552
PspXI VCTCGAGB 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 970
PsuI RGATCY 3 cut(s) 263, 271, 643
PteI GCGCGC 2 cut(s) 18, 20
PvuI CGATCG 1 cut(s) 414
RseI CAYNNNNRTG 2 cut(s) 226, 927
SacI GAGCTC 2 cut(s) 667, 684
SaqAI TTAA 5 cut(s) 303, 659, 686, 806, 858
SatI GCNGC 7 cut(s) 25, 75, 78, 208, 219, 327, 498
Sau3AI GATC 7 cut(s) 36, 263, 271, 288, 411, 505, 643
SchI GAGTC 5 cut(s) 87, 154, 362, 422, 976
SduI GDGCHC 2 cut(s) 667, 684
SfaNI GCATC 3 cut(s) 230, 557, 721
SfoI GGCGCC 1 cut(s) 167
Sfr274I CTCGAG 2 cut(s) 178, 267
SfuI TTCGAA 2 cut(s) 458, 485
SgrAI CRCCGGYG 1 cut(s) 212
SlaI CTCGAG 2 cut(s) 178, 267
SmiMI CAYNNNNRTG 2 cut(s) 226, 927
SmlI CTYRAG 5 cut(s) 178, 267, 302, 601, 666
SmoI CTYRAG 5 cut(s) 178, 267, 302, 601, 666
Sse9I AATT 2 cut(s) 656, 868
SspDI GGCGCC 1 cut(s) 165
SspMI CTAG 2 cut(s) 138, 404
SstI GAGCTC 2 cut(s) 667, 684
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 594
TaqI TCGA 8 cut(s) 179, 224, 268, 414, 458, 485, 565, 717
TasI AATT 2 cut(s) 656, 868
TauI GCSGC 7 cut(s) 27, 77, 80, 210, 221, 329, 500
TfiI GAWTC 3 cut(s) 482, 631, 950
Tru1I TTAA 5 cut(s) 303, 659, 686, 806, 858
Tru9I TTAA 5 cut(s) 303, 659, 686, 806, 858
TspDTI ATGAA 5 cut(s) 113, 669, 703, 817, 911
TspGWI ACGGA 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 560
Vha464I CTTAAG 1 cut(s) 302
XceI RCATGY 1 cut(s) 988
XhoI CTCGAG 2 cut(s) 178, 267
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 2 cut(s) 138, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.