RLG00000029477

OTU domain-containing protein At3g57810-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014791
Physical Location & Seq
Reverse (-)
39272453 .. 39273840
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029477

Sequence Viewer

Length: 741 bp
ATGCTCGGATTCCTCTGTGCGCGCCGGAAAACTTGGATTGTCAGCTCCCTTTCTTCTTTTGCTCACGGCCCGGCTGCGATTCACCAGAGCCGGATCGTCCACAACCCGTTGATTCAGCACCAACTCGCTAACTTTTCCGGCGAAGCCCCCCGCCGCCGCCACCACCACAACAGCGCCTGCCAGCTAGGGTCAGCATGCGGCGGCGGCGCCGCGGCGTCCATATGGCACGCTATTCTTCCCTCGTCCGGTCTCTGGAGGCGACGGGATCTCCGTCGTCCTGCGATCCACTACGAGCTTAAGGGCGAGGGGTCGTGGAATGCTGCTCTGGATGCTCGCCCGGCTCGCTGGCTCCACCGGCCCGACTCGGCTTGGCTCCTTTTCGGGGTTTGCAACTGCCTTGCGCCGATAGACTGGGGCAATACAACTAGCTCAACCAACGATGAGGAGTCGAATAATAAAACTGAAGCCTGTGATTCGAAAAGCGTCATTACTTCTGACGAGAACTTGGAGAGCTCCGCTGATTACAGAGTTACAGGAGTGCTAGCCGATGGTCGGTGTCTCTTCAGAGCGATAGCACATGTGGCTTGCTTGAGAAATGGGGAGGAACCTCCTGATGAAAACCGTCAGAGAGAGCTCGCTGATGAATTAAGAGCTCAAGTAATTCTCATTTCTTTTCAGGCAAATTTCGTACCTAATTGTTGGTGTATATTTTATAGTTCTTACTCAAATGGTTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

247

Amino Acids

27.31

Weight (kDa)

7.63

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06300
malus_domestica MD02G1245100.v1.1
prunus_persica Prupe.2G089600_v2.0.a1 Prupe.2G089600_v2.0.a1
pyrus_communis pycom02g21100
rosa_chinensis RchiOBHm_Chr1g0334131
rosa_laevigata RLG00000029477
rosa_multiflora Rmu_sc0003690.1_g000029 Rmu_sc0008401.1_g000011
rosa_roxburghii Rroxscaffold_4G00316990
rosa_rugosa Rorug01G0112900
rosa_samantha Rh1AG136900 Rh1BG104300 Rh1CG129100 Rh1DG141900
rosa_wichuraiana Rw0G019310 Rw1G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 2 cut(s) 22, 212
AciI CCGC 9 cut(s) 151, 154, 157, 198, 201, 204, 210, 212, 516
AclWI GGATC 3 cut(s) 101, 273, 277
AcsI RAATTY 1 cut(s) 682
AcuI CTGAAG 2 cut(s) 483, 547
AcyI GRCGYC 2 cut(s) 207, 215
AfaI GTAC 1 cut(s) 690
AfiI CCNNNNNNNGG 4 cut(s) 245, 252, 382, 552
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 577
AluBI AGCT 7 cut(s) 45, 184, 295, 429, 513, 634, 653
AluI AGCT 7 cut(s) 45, 184, 295, 429, 513, 634, 653
Alw21I GWGCWC 3 cut(s) 515, 636, 655
Alw26I GTCTC 2 cut(s) 254, 563
AlwI GGATC 3 cut(s) 101, 273, 277
AlwNI CAGNNNCTG 1 cut(s) 177
AoxI GGCC 2 cut(s) 67, 356
ApeKI GCWGC 2 cut(s) 74, 320
ApoI RAATTY 1 cut(s) 682
AspLEI GCGC 5 cut(s) 22, 24, 176, 209, 403
AspS9I GGNCC 2 cut(s) 68, 357
AsuC2I CCSGG 2 cut(s) 71, 338
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 3 cut(s) 515, 636, 655
Bbv12I GWGCWC 3 cut(s) 515, 636, 655
BbvI GCAGC 2 cut(s) 61, 307
BccI CCATC 1 cut(s) 542
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 71, 338
BcoDI GTCTC 2 cut(s) 254, 563
BfaI CTAG 3 cut(s) 185, 426, 542
BfoI RGCGCY 2 cut(s) 177, 210
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
BlsI GCNGC 9 cut(s) 76, 155, 158, 200, 203, 206, 211, 214, 322
Bme1390I CCNGG 2 cut(s) 71, 338
BmgT120I GGNCC 2 cut(s) 68, 357
BmiI GGNNCC 4 cut(s) 208, 350, 374, 606
BmrFI CCNGG 2 cut(s) 71, 338
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 610, 639
BpuMI CCSGG 2 cut(s) 71, 338
BsaHI GRCGYC 2 cut(s) 207, 215
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 252, 382, 552
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 4 cut(s) 245, 252, 382, 552
BseNI ACTGG 1 cut(s) 416
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 2 cut(s) 61, 307
Bsh1236I CGCG 2 cut(s) 22, 212
BshFI GGCC 2 cut(s) 69, 358
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 3 cut(s) 515, 636, 655
BsiSI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
BslI CCNNNNNNNGG 4 cut(s) 245, 252, 382, 552
BsmAI GTCTC 2 cut(s) 254, 563
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 69, 358
Bso31I GGTCTC 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 515, 636, 655
Bsp143I GATC 3 cut(s) 93, 265, 282
BspACI CCGC 9 cut(s) 151, 154, 157, 198, 201, 204, 210, 212, 516
BspANI GGCC 2 cut(s) 69, 358
BspFNI CGCG 2 cut(s) 22, 212
BspLI GGNNCC 4 cut(s) 208, 350, 374, 606
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 3 cut(s) 101, 273, 277
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 210
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 3 cut(s) 93, 265, 282
BssNI GRCGYC 2 cut(s) 207, 215
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 2 cut(s) 207, 215
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 22, 212
BstH2I RGCGCY 2 cut(s) 177, 210
BstHHI GCGC 5 cut(s) 22, 24, 176, 209, 403
BstKTI GATC 3 cut(s) 96, 268, 285
BstMAI GTCTC 2 cut(s) 254, 563
BstMBI GATC 3 cut(s) 93, 265, 282
BstMWI GCNNNNNNNGC 6 cut(s) 204, 329, 338, 342, 355, 581
BstNSI RCATGY 2 cut(s) 198, 581
BstSCI CCNGG 2 cut(s) 69, 336
BstUI CGCG 2 cut(s) 22, 212
BstV1I GCAGC 2 cut(s) 61, 307
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 69, 358
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 177
CfoI GCGC 5 cut(s) 22, 24, 176, 209, 403
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 68, 357
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 2 cut(s) 204, 472
Csp6I GTAC 1 cut(s) 689
CviAII CATG 2 cut(s) 195, 578
CviQI GTAC 1 cut(s) 689
DinI GGCGCC 1 cut(s) 208
DpnI GATC 3 cut(s) 95, 267, 284
DpnII GATC 3 cut(s) 93, 265, 282
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 3 cut(s) 513, 634, 653
Eco24I GRGCYC 3 cut(s) 515, 636, 655
Eco31I GGTCTC 1 cut(s) 254
Eco53kI GAGCTC 3 cut(s) 513, 634, 653
Eco57I CTGAAG 2 cut(s) 483, 547
EcoICRI GAGCTC 3 cut(s) 513, 634, 653
EcoT38I GRGCYC 3 cut(s) 515, 636, 655
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
FaeI CATG 2 cut(s) 198, 581
FaiI YATR 6 cut(s) 196, 221, 223, 579, 707, 714
FatI CATG 2 cut(s) 194, 577
FauI CCCGC 1 cut(s) 158
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 3 cut(s) 515, 636, 655
Fsp4HI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
FspBI CTAG 3 cut(s) 185, 426, 542
GlaI GCGC 5 cut(s) 21, 23, 175, 208, 402
GluI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 2 cut(s) 177, 210
HaeIII GGCC 2 cut(s) 69, 358
HapII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HgaI GACGC 2 cut(s) 204, 472
HhaI GCGC 5 cut(s) 22, 24, 176, 209, 403
Hin1I GRCGYC 2 cut(s) 207, 215
Hin1II CATG 2 cut(s) 198, 581
Hin6I GCGC 5 cut(s) 20, 22, 174, 207, 401
HinP1I GCGC 5 cut(s) 20, 22, 174, 207, 401
HinfI GANTC 6 cut(s) 9, 79, 112, 362, 446, 473
HpaII CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 8, 496, 566, 627
Hpy188III TCNNGA 3 cut(s) 253, 326, 611
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 2 cut(s) 264, 276
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 6 cut(s) 204, 329, 338, 342, 355, 581
Hsp92I GRCGYC 2 cut(s) 207, 215
Hsp92II CATG 2 cut(s) 198, 581
HspAI GCGC 5 cut(s) 20, 22, 174, 207, 401
KasI GGCGCC 1 cut(s) 206
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 3 cut(s) 93, 265, 282
LmnI GCTCC 4 cut(s) 50, 354, 378, 518
Lsp1109I GCAGC 2 cut(s) 61, 307
LweI GCATC 1 cut(s) 319
MaeI CTAG 3 cut(s) 185, 426, 542
MaeIII GTNAC 1 cut(s) 529
MalI GATC 3 cut(s) 95, 267, 284
MboI GATC 3 cut(s) 93, 265, 282
MboII GAAGA 3 cut(s) 45, 227, 553
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 515, 636, 655
MluCI AATT 4 cut(s) 644, 660, 682, 694
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 356, 455
MnlI CCTC 7 cut(s) 23, 249, 250, 298, 436, 595, 618
MseI TTAA 2 cut(s) 297, 647
MspA1I CMGCKG 2 cut(s) 212, 518
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 7 cut(s) 25, 71, 91, 138, 246, 338, 355
MspR9I CCNGG 2 cut(s) 71, 338
Mva1269I GAATGC 1 cut(s) 322
MvnI CGCG 2 cut(s) 22, 212
MwoI GCNNNNNNNGC 6 cut(s) 204, 329, 338, 342, 355, 581
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 2 cut(s) 71, 338
NdeI CATATG 1 cut(s) 221
NdeII GATC 3 cut(s) 93, 265, 282
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 198, 581
NlaIV GGNNCC 4 cut(s) 208, 350, 374, 606
NmeAIII GCCGAG 1 cut(s) 344
NspI RCATGY 2 cut(s) 198, 581
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 198
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 9, 79, 112, 473
PkrI GCNGC 9 cut(s) 76, 155, 158, 200, 203, 206, 211, 214, 322
PleI GAGTC 2 cut(s) 356, 454
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 356, 454
PscI ACATGT 1 cut(s) 577
Psp124BI GAGCTC 3 cut(s) 515, 636, 655
PspN4I GGNNCC 4 cut(s) 208, 350, 374, 606
PspPI GGNCC 2 cut(s) 68, 357
PstNI CAGNNNCTG 1 cut(s) 177
PsuI RGATCY 1 cut(s) 265
PteI GCGCGC 1 cut(s) 20
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
SacI GAGCTC 3 cut(s) 515, 636, 655
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 297, 647
SatI GCNGC 9 cut(s) 75, 154, 157, 199, 202, 205, 210, 213, 321
Sau3AI GATC 3 cut(s) 93, 265, 282
Sau96I GGNCC 2 cut(s) 68, 357
SchI GAGTC 2 cut(s) 356, 455
ScrFI CCNGG 2 cut(s) 71, 338
SduI GDGCHC 3 cut(s) 515, 636, 655
SetI ASST 9 cut(s) 47, 186, 297, 431, 515, 610, 636, 655, 694
SfaNI GCATC 1 cut(s) 319
SfoI GGCGCC 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 296, 589, 654
SmoI CTYRAG 3 cut(s) 296, 589, 654
SphI GCATGC 1 cut(s) 198
Sse9I AATT 4 cut(s) 644, 660, 682, 694
SsiI CCGC 9 cut(s) 151, 154, 157, 198, 201, 204, 210, 212, 516
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 3 cut(s) 185, 426, 542
SstI GAGCTC 3 cut(s) 515, 636, 655
StyD4I CCNGG 2 cut(s) 69, 336
TaaI ACNGT 1 cut(s) 623
TaqI TCGA 2 cut(s) 449, 476
TasI AATT 4 cut(s) 644, 660, 682, 694
TauI GCSGC 7 cut(s) 156, 159, 201, 204, 207, 212, 215
TfiI GAWTC 4 cut(s) 9, 79, 112, 473
Tru1I TTAA 2 cut(s) 297, 647
Tru9I TTAA 2 cut(s) 297, 647
TseI GCWGC 2 cut(s) 74, 320
TspDTI ATGAA 2 cut(s) 630, 657
TspGWI ACGGA 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 1 cut(s) 682
XceI RCATGY 2 cut(s) 198, 581
XspI CTAG 3 cut(s) 185, 426, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.