MD02G1256600.v1.1

Germin-like protein subfamily 3 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016937
Physical Location & Seq
Reverse (-)
30911878 .. 30912090
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1256600.v1.1.491

Sequence Viewer

Length: 213 bp
ATGGTGTTTCCAAGGAGTCTAGTGCACTTTCAAATGAATGTTGGTGATACTCCGGCAACTATATTGGGCAGTTTTGACAGCCAAAACCCTGGAACCCAGAAAATCCCCGCTGCAATTTTTGGATCCGGTATCAAAGATAAACTCTTGGAAAAAGCTTTTGGATTGAGTTCTAAGGAGATTTCAAAGTTGAAAAAGAAGCTTGGTTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

71

Amino Acids

7.54

Weight (kDa)

9.9

Isoelectric Point (pI)

21.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 1 - 60 1.5e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016937)

Species Orthologous Gene IDs
malus_domestica MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica Prupe.2G077100_v2.0.a1
pyrus_communis pycom02g21710 pycom07g04920
rosa_chinensis RchiOBHm_Chr1g0332401
rosa_laevigata RLG00000029673
rosa_multiflora Rmu_ssc0000161.1_g000016
rosa_roxburghii Rroxscaffold_4G00318210
rosa_rugosa Rorug01G0100500.1
rosa_samantha Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana Rw1G010120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 117, 130
AgsI TTSAA 3 cut(s) 32, 183, 190
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 2 cut(s) 155, 199
AluI AGCT 2 cut(s) 155, 199
Alw21I GWGCWC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 2 cut(s) 117, 130
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 27
BamHI GGATCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 90
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 94, 124
BmrFI CCNGG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 11, 88
BsaWI WCCGGW 1 cut(s) 125
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 11, 88
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 53, 126
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 94, 124
BspPI GGATC 2 cut(s) 117, 130
BssECI CCNNGG 2 cut(s) 11, 88
BssMI GATC 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 1 cut(s) 122
CviJI RGCY 3 cut(s) 81, 155, 199
CviKI_1 RGCY 3 cut(s) 81, 155, 199
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaiI YATR 1 cut(s) 62
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 111
HapII CCGG 2 cut(s) 53, 126
HindIII AAGCTT 2 cut(s) 153, 197
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 53, 126
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 25, 206
Hpy8I GTNNAC 2 cut(s) 25, 206
HpyCH4V TGCA 2 cut(s) 25, 113
HpyF3I CTNAG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 66, 75, 102, 110, 139
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 53, 126
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NdeII GATC 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 94, 124
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 94, 124
PsuI RGATCY 1 cut(s) 122
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 122
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 157, 201
SgeI CNNG 9 cut(s) 24, 32, 65, 101, 102, 109, 119, 138, 157
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 11
TasI AATT 1 cut(s) 114
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 50
VneI GTGCAC 1 cut(s) 23
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.