pycom07g04920

Germin-like protein subfamily 3 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016937
Physical Location & Seq
Forward (+)
4235623 .. 4236243
621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04920.1

Sequence Viewer

Length: 621 bp
ATGGTTTACAAAACGGTAGTCCTTTTCGTTGTCCTCCTCTTCAACATGAGCTATGTGATTTTCGCTTCTGATCCGGATCCGGTTCAAGACTTCTGCATAGCCAACACAGAGCCTGCAAGCCATTCCAGCCAATGCAAGAACTCATCCCTCGCAACTGTAGAAGATTTTGTATTTTCCGGCATTAAGGTTCCTGGAAAGTTTGGTCCTACCGGGCTTTCTGGCGTTTCGGTGAACTCAAATGTCTTTCCAGGACTCAACACACTCGGCATGTCATTTGTCCGAGCTGACTTTAAAGTTGGTGGAGTAAACGTGCCACATTTTCACCCGAGAGCGACGGAGACTGCATTCGTGCTCGAAGGAAAGATTTATTCGGGGTTTGTTGATACGAATAACAGGATTTTTGCCAAAGTGATCGAAAAAGGTGAGGTGATGGTGTTTCCAAGGGGTCTACTGCACTTCCAAATGAATGTTGGCGATACTCCGGCAACTATATTGGGCAGCTTTGACAGCCAAAACCCCGGATCCCAGAGAATCCCCGCTGCAATTTTCGGATCCGGTATCAAAGATAAGCTCTTGGAAAAAGCTTTTGGATTGAGTTCTAAGGATCGATCTCTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

207

Amino Acids

22.19

Weight (kDa)

7.79

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 64 - 202 2.2e-41 Cupin
Cupin_2 PF07883 95 - 165 7.7e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016937)

Species Orthologous Gene IDs
malus_domestica MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica Prupe.2G077100_v2.0.a1
pyrus_communis pycom02g21710 pycom07g04920
rosa_chinensis RchiOBHm_Chr1g0332401
rosa_laevigata RLG00000029673
rosa_multiflora Rmu_ssc0000161.1_g000016
rosa_roxburghii Rroxscaffold_4G00318210
rosa_rugosa Rorug01G0100500.1
rosa_samantha Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana Rw1G010120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 1 cut(s) 537
AclWI GGATC 8 cut(s) 65, 71, 84, 516, 529, 546, 559, 612
AgsI TTSAA 2 cut(s) 43, 86
AjnI CCWGG 2 cut(s) 190, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 5 cut(s) 51, 284, 501, 571, 584
AluI AGCT 5 cut(s) 51, 284, 501, 571, 584
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 8 cut(s) 65, 71, 84, 516, 529, 546, 559, 612
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 325
Aor13HI TCCGGA 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 498, 539
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 211, 519
AsuHPI GGTGA 4 cut(s) 241, 314, 434, 439
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 1 cut(s) 203
BamHI GGATCC 3 cut(s) 76, 521, 551
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 510, 526
BccI CCATC 1 cut(s) 424
BciT130I CCWGG 2 cut(s) 192, 249
BcnI CCSGG 2 cut(s) 211, 519
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 499, 540
BlsI GCNGC 2 cut(s) 500, 541
Bme1390I CCNGG 4 cut(s) 192, 211, 249, 519
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 4 cut(s) 78, 189, 523, 553
BmrFI CCNGG 4 cut(s) 192, 211, 249, 519
BpuMI CCSGG 2 cut(s) 211, 519
Bsa29I ATCGAT 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 440, 517
BsaWI WCCGGW 3 cut(s) 73, 79, 554
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse8I GATNNNNATC 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 2 cut(s) 192, 249
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 2 cut(s) 440, 517
BseGI GGATG 1 cut(s) 143
BseJI GATNNNNATC 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 510, 526
BsgI GTGCAG 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 7 cut(s) 74, 80, 177, 210, 482, 519, 555
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
BspACI CCGC 1 cut(s) 537
BspDI ATCGAT 1 cut(s) 607
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 4 cut(s) 78, 189, 523, 553
BspPI GGATC 8 cut(s) 65, 71, 84, 516, 529, 546, 559, 612
BssECI CCNNGG 2 cut(s) 440, 517
BssMI GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 192, 249
Bst4CI ACNGT 2 cut(s) 16, 157
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 2 cut(s) 600, 614
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 7 cut(s) 73, 79, 414, 524, 554, 607, 611
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
BstMWI GCNNNNNNNGC 2 cut(s) 126, 507
BstNI CCWGG 2 cut(s) 192, 249
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 190, 209, 247, 517
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 510, 526
BstX2I RGATCY 3 cut(s) 76, 521, 551
BstYI RGATCY 3 cut(s) 76, 521, 551
Bsu15I ATCGAT 1 cut(s) 607
BsuTUI ATCGAT 1 cut(s) 607
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 114, 118
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 607
CviAII CATG 2 cut(s) 46, 268
DdeI CTNAG 2 cut(s) 600, 614
DpnI GATC 7 cut(s) 72, 78, 413, 523, 553, 606, 610
DpnII GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
DraI TTTAAA 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 190, 247
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 2 cut(s) 49, 271
FaiI YATR 5 cut(s) 47, 54, 98, 269, 491
FatI CATG 2 cut(s) 45, 267
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 499, 540
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 499, 540
GluI GCNGC 2 cut(s) 499, 540
HapII CCGG 7 cut(s) 74, 80, 177, 210, 482, 519, 555
Hin1II CATG 2 cut(s) 49, 271
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 2 cut(s) 252, 531
HpaII CCGG 7 cut(s) 74, 80, 177, 210, 482, 519, 555
HphI GGTGA 4 cut(s) 241, 314, 434, 439
Hpy166II GTNNAC 4 cut(s) 7, 232, 307, 449
Hpy188I TCNGA 3 cut(s) 70, 281, 551
Hpy188III TCNNGA 2 cut(s) 74, 86
Hpy8I GTNNAC 4 cut(s) 7, 232, 307, 449
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 16, 157
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 6 cut(s) 96, 116, 135, 344, 454, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 507
HpyF3I CTNAG 2 cut(s) 600, 614
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 49, 271
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
Lsp1109I GCAGC 2 cut(s) 510, 526
MaeII ACGT 1 cut(s) 309
MalI GATC 7 cut(s) 72, 78, 413, 523, 553, 606, 610
MboI GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
MboII GAAGA 2 cut(s) 31, 173
MflI RGATCY 3 cut(s) 76, 521, 551
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 1 cut(s) 543
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 4 cut(s) 44, 47, 158, 418
MroI TCCGGA 1 cut(s) 73
MseI TTAA 2 cut(s) 183, 291
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 7 cut(s) 74, 80, 177, 210, 482, 519, 555
MspR9I CCNGG 4 cut(s) 192, 211, 249, 519
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 2 cut(s) 192, 249
MwoI GCNNNNNNNGC 2 cut(s) 126, 507
NciI CCSGG 2 cut(s) 211, 519
NdeII GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
NlaIII CATG 2 cut(s) 49, 271
NlaIV GGNNCC 4 cut(s) 78, 189, 523, 553
NmeAIII GCCGAG 1 cut(s) 243
NspI RCATGY 1 cut(s) 271
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 531
PfoI TCCNGGA 2 cut(s) 190, 247
PkrI GCNGC 2 cut(s) 500, 541
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 190, 247
PspGI CCWGG 2 cut(s) 190, 247
PspN4I GGNNCC 4 cut(s) 78, 189, 523, 553
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 3 cut(s) 76, 521, 551
SaqAI TTAA 2 cut(s) 183, 291
SatI GCNGC 2 cut(s) 499, 540
Sau3AI GATC 7 cut(s) 70, 76, 411, 521, 551, 604, 608
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 4 cut(s) 192, 211, 249, 519
SduI GDGCHC 1 cut(s) 354
SetI ASST 9 cut(s) 53, 189, 286, 312, 424, 429, 503, 573, 586
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 203
Sse9I AATT 1 cut(s) 543
SsiI CCGC 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 190, 209, 247, 517
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 2 cut(s) 16, 157
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 354, 414, 607
TasI AATT 1 cut(s) 543
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 2 cut(s) 183, 291
Tru9I TTAA 2 cut(s) 183, 291
TseI GCWGC 2 cut(s) 498, 539
TspDTI ATGAA 1 cut(s) 479
TspGWI ACGGA 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 203
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.