Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016937

Physical Location & Seq

Genomic Coordinates Reverse (-)

44267044 .. 44268190

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCATTTGTCCGAGCTGATTTTGAAGTTGGTGGTGTAAATGTGCCTCATTACCATCCGAGGGCAGCGGAGACAGCCTTTGTGCTTGAAGGAAAGATTTATTCCGGGTTTGTTGATACGAATAACAAGATTTTCGCTAGAGTGATCGAAAGGGGTGAGGTCATGGTGTTTCCAAAAGGGTTAGTGCACTTCCAAATGAATGTTGGTGACACTCCAGCAACCATATTGGGGAGCTTCAACAGCCAAAATCCTGGATTGCAAAGAATTCCCACTTCAATTTTCGGATCCGGGATCAAAGATGAGCTCTTGGAGAAGGCTTTTGGATTGAGTTCTAAGGACATTGCCAAGTTGAAAAAGAAGCTTGGTCCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

9.3

Isoelectric Point (pI)

19.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	1 - 113	1.1e-34	Cupin
Cupin_2	PF07883	6 - 76	2.2e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016937)

Species	Orthologous Gene IDs
malus_domestica	MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica	Prupe.2G077100_v2.0.a1
pyrus_communis	pycom02g21710 pycom07g04920
rosa_chinensis	RchiOBHm_Chr1g0332401
rosa_laevigata	RLG00000029673
rosa_multiflora	Rmu_ssc0000161.1_g000016
rosa_roxburghii	Rroxscaffold_4G00318210
rosa_rugosa	Rorug01G0100500.1
rosa_samantha	Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana	Rw1G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	279, 292, 299
AcsI	RAATTY	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	61, 228
AgsI	TTSAA	5 cut(s)	26, 89, 238, 276, 352
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	4 cut(s)	17, 234, 304, 361
AluI	AGCT	4 cut(s)	17, 234, 304, 361
Alw21I	GWGCWC	2 cut(s)	189, 306
Alw26I	GTCTC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	279, 292, 299
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	106, 289
AsuHPI	GGTGA	2 cut(s)	167, 218
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	189, 306
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	2 cut(s)	106, 289
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	106, 252, 289
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	286, 367
BmrFI	CCNGG	3 cut(s)	106, 252, 289
BpmI	CTGGAG	1 cut(s)	198
BpuMI	CCSGG	2 cut(s)	106, 289
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 228
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	61, 228
BseMI	GCAATG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	189, 306
BsiSI	CCGG	2 cut(s)	105, 288
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	61, 228
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	189, 306
Bsp143I	GATC	3 cut(s)	144, 284, 291
BspACI	CCGC	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	286, 367
BspPI	GGATC	3 cut(s)	279, 292, 299
BsrDI	GCAATG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	144, 284, 291
Bst2UI	CCWGG	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	3 cut(s)	147, 287, 294
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	144, 284, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 240
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	104, 250, 287
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	365
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	7 cut(s)	17, 77, 234, 243, 304, 317, 361
CviKI_1	RGCY	7 cut(s)	17, 77, 234, 243, 304, 317, 361
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	3 cut(s)	146, 286, 293
DpnII	GATC	3 cut(s)	144, 284, 291
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 224
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	198
HapII	CCGG	2 cut(s)	105, 288
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	2 cut(s)	105, 288
HphI	GGTGA	2 cut(s)	167, 218
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	14, 60, 284
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	83, 307
HpyCH4V	TGCA	2 cut(s)	187, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 240
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	144, 284, 291
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	5 cut(s)	118, 228, 237, 264, 301
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	3 cut(s)	146, 286, 293
MboI	GATC	3 cut(s)	144, 284, 291
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	189, 306
MluCI	AATT	2 cut(s)	264, 276
MnlI	CCTC	3 cut(s)	54, 57, 151
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	105, 288
MspR9I	CCNGG	3 cut(s)	106, 252, 289
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	74, 240
NciI	CCSGG	2 cut(s)	106, 289
NdeII	GATC	3 cut(s)	144, 284, 291
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	286, 367
NmuCI	GTSAC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	250, 287
PkrI	GCNGC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	286, 367
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	306
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	3 cut(s)	144, 284, 291
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	3 cut(s)	106, 252, 289
SduI	GDGCHC	2 cut(s)	189, 306
SetI	ASST	5 cut(s)	19, 162, 236, 306, 363
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	264, 276
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	104, 250, 287
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	264, 276
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.