Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016937

Physical Location & Seq

Genomic Coordinates Forward (+)

5991911 .. 5992552

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1063800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTTTACAAAACGGTGGTCCTTTTCGTTATCCTCCTCTTCAACATGAGCTATGTGATTTTCGCTTCTGATCCGGATCCGGTTCAAGACTTCTGCATAGCCAACACAGAGCCTGCAAGCCATTCCAGCCAATGCAAGAACTCATCCCTCGCAACTGTAGAAGATTTTGTATTTTCCGGCATTAAGGTTCCTGGAAAGTTTGGTCCTACCGGGCTTTCTGGCGTTTCGGTGAACTCAAATGTCTTTCCAGGACTCAACACACTTGGCATGTCATTTGTCCGAGCTGACTTTGAAGTTGGTGGAGTAAACGTGCCACATTTTCACCCGAGAGCCACGGAGACTGCATTCGTGCTCGAAGGAAAGATTTATTCGGGGTTTGTTGATACGAATAACAGGATTTTCGCCAAAGTGATCGAAAAAGGTGAGGTGATGGTGTTTCCAAGGGGTCTACTGCACTTCCAAATGAATGTTGGTGATACTCCGGCAACTTTATTGGGCAGCTTTGACAGCCAAAACCCCGGATCCCAGAGAATCCCCGCTGCAATTTTCGGATCCGGTATCAAAGATAAGCTCTTGGAAAAAGCTTTTGGATTGAGTTCTAAGGAGATTTCTAAGTTGAAAAAGAAGCTTGGTTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

214

Amino Acids

23.0

Weight (kDa)

8.51

Isoelectric Point (pI)

21.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	64 - 203	1.2e-41	Cupin
Cupin_2	PF07883	95 - 165	5.1e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016937)

Species	Orthologous Gene IDs
malus_domestica	MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica	Prupe.2G077100_v2.0.a1
pyrus_communis	pycom02g21710 pycom07g04920
rosa_chinensis	RchiOBHm_Chr1g0332401
rosa_laevigata	RLG00000029673
rosa_multiflora	Rmu_ssc0000161.1_g000016
rosa_roxburghii	Rroxscaffold_4G00318210
rosa_rugosa	Rorug01G0100500.1
rosa_samantha	Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana	Rw1G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	448
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	7 cut(s)	65, 71, 84, 516, 529, 546, 559
AgsI	TTSAA	4 cut(s)	43, 86, 293, 619
AjnI	CCWGG	2 cut(s)	190, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	6 cut(s)	51, 284, 501, 571, 584, 628
AluI	AGCT	6 cut(s)	51, 284, 501, 571, 584, 628
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	7 cut(s)	65, 71, 84, 516, 529, 546, 559
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	498, 539
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	19, 203
AsuC2I	CCSGG	2 cut(s)	211, 519
AsuHPI	GGTGA	5 cut(s)	241, 314, 434, 439, 485
AvaI	CYCGRG	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	19, 203
BamHI	GGATCC	3 cut(s)	76, 521, 551
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	510, 526
BccI	CCATC	1 cut(s)	424
BciT130I	CCWGG	2 cut(s)	192, 249
BcnI	CCSGG	2 cut(s)	211, 519
BcoDI	GTCTC	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	499, 540
BlsI	GCNGC	2 cut(s)	500, 541
Bme1390I	CCNGG	4 cut(s)	192, 211, 249, 519
Bme18I	GGWCC	2 cut(s)	19, 203
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	19, 203
BmiI	GGNNCC	4 cut(s)	78, 189, 523, 553
BmrFI	CCNGG	4 cut(s)	192, 211, 249, 519
BpuMI	CCSGG	2 cut(s)	211, 519
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	333, 440, 517
BsaWI	WCCGGW	3 cut(s)	73, 79, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bse8I	GATNNNNATC	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	192, 249
BseDI	CCNNGG	3 cut(s)	333, 440, 517
BseGI	GGATG	1 cut(s)	143
BseJI	GATNNNNATC	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	510, 526
BsgI	GTGCAG	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	7 cut(s)	74, 80, 177, 210, 482, 519, 555
BsmAI	GTCTC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	70, 76, 411, 521, 551
BspACI	CCGC	1 cut(s)	537
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	4 cut(s)	78, 189, 523, 553
BspPI	GGATC	7 cut(s)	65, 71, 84, 516, 529, 546, 559
BssECI	CCNNGG	3 cut(s)	333, 440, 517
BssMI	GATC	5 cut(s)	70, 76, 411, 521, 551
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	192, 249
Bst4CI	ACNGT	2 cut(s)	16, 157
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	114, 118
BstDEI	CTNAG	2 cut(s)	600, 612
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	5 cut(s)	73, 79, 414, 524, 554
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	5 cut(s)	70, 76, 411, 521, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 507
BstNI	CCWGG	2 cut(s)	192, 249
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	4 cut(s)	190, 209, 247, 517
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	510, 526
BstX2I	RGATCY	3 cut(s)	76, 521, 551
BstYI	RGATCY	3 cut(s)	76, 521, 551
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	114, 118
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	19, 203
CviAII	CATG	2 cut(s)	46, 268
DdeI	CTNAG	2 cut(s)	600, 612
DpnI	GATC	5 cut(s)	72, 78, 413, 523, 553
DpnII	GATC	5 cut(s)	70, 76, 411, 521, 551
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	19, 203
Eco88I	CYCGRG	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	190, 247
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	2 cut(s)	49, 271
FaiI	YATR	4 cut(s)	47, 54, 98, 269
FatI	CATG	2 cut(s)	45, 267
FauI	CCCGC	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	499, 540
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	499, 540
GluI	GCNGC	2 cut(s)	499, 540
HapII	CCGG	7 cut(s)	74, 80, 177, 210, 482, 519, 555
Hin1II	CATG	2 cut(s)	49, 271
HindIII	AAGCTT	2 cut(s)	582, 626
HinfI	GANTC	2 cut(s)	252, 531
HpaII	CCGG	7 cut(s)	74, 80, 177, 210, 482, 519, 555
HphI	GGTGA	5 cut(s)	241, 314, 434, 439, 485
Hpy166II	GTNNAC	5 cut(s)	7, 232, 307, 449, 635
Hpy188I	TCNGA	3 cut(s)	70, 281, 551
Hpy188III	TCNNGA	2 cut(s)	74, 86
Hpy8I	GTNNAC	5 cut(s)	7, 232, 307, 449, 635
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	2 cut(s)	16, 157
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	6 cut(s)	96, 116, 135, 344, 454, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 507
HpyF3I	CTNAG	2 cut(s)	600, 612
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	49, 271
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	70, 76, 411, 521, 551
Lsp1109I	GCAGC	2 cut(s)	510, 526
MaeII	ACGT	1 cut(s)	309
MalI	GATC	5 cut(s)	72, 78, 413, 523, 553
MboI	GATC	5 cut(s)	70, 76, 411, 521, 551
MboII	GAAGA	2 cut(s)	31, 173
MflI	RGATCY	3 cut(s)	76, 521, 551
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	44, 47, 158, 418
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	7 cut(s)	74, 80, 177, 210, 482, 519, 555
MspR9I	CCNGG	4 cut(s)	192, 211, 249, 519
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	192, 249
MwoI	GCNNNNNNNGC	2 cut(s)	126, 507
NciI	CCSGG	2 cut(s)	211, 519
NdeII	GATC	5 cut(s)	70, 76, 411, 521, 551
NlaIII	CATG	2 cut(s)	49, 271
NlaIV	GGNNCC	4 cut(s)	78, 189, 523, 553
NspI	RCATGY	1 cut(s)	271
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	531
PfoI	TCCNGGA	2 cut(s)	190, 247
PkrI	GCNGC	2 cut(s)	500, 541
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	190, 247
PspGI	CCWGG	2 cut(s)	190, 247
PspN4I	GGNNCC	4 cut(s)	78, 189, 523, 553
PspPI	GGNCC	2 cut(s)	19, 203
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	76, 521, 551
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	499, 540
Sau3AI	GATC	5 cut(s)	70, 76, 411, 521, 551
Sau96I	GGNCC	2 cut(s)	19, 203
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	4 cut(s)	192, 211, 249, 519
SduI	GDGCHC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	19, 203
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	537
StyD4I	CCNGG	4 cut(s)	190, 209, 247, 517
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	16, 157
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	354, 414
TasI	AATT	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	498, 539
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	19, 203
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.