Prupe.2G077100_v2.0.a1

Germin-like protein subfamily 3 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016937
Physical Location & Seq
Forward (+)
11890351 .. 11891500
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G077100.1

Sequence Viewer

Length: 648 bp
ATGTGCAGAACCATGTTGTACAAAATGGTTGTTCTTTTTGTCATCCTCCTCAACAGCTATGTCACTCGGGCTTCTGATCCGGATCCAGTTCAGGACTTCTGCATAGCCAACACAGAATCTGCAAGCCATGCCAAGCAATGCAAGAACTCATCCCTTGTAACAGTAGAAGATTTTGTATATGCTGGCATTAAGGTTCCTGGAAAATTTGGTCCAACAGGGCTCTCTGCAGTTTCAGTGAACTCAAATGTCTTCCCAGGATTAAACACACTTGGCATGTCACTTGTCCGAGCTGATTTTGAAGTTGGTGGTGTAAATGTGCCACATTTCCATCCAAGGGCCACTGAGATTGCATTTGTGCTTGAAGGAACGATTTATTCGGGTTTTGTTGATACAAATAACAAGGTTTTTGCTAAAGTGATTAAGAAGGGTGAGGTGATGGTGTTTCCAAGGGGTCTCGTGCACTTTCAAATGAATGTTGGTGATACTCCAGCAACTATATTGGGGAGTTTTGACAGCCAAAATCCTGGATCGCAGAGAATTCCAGCTGCAATTTTCGGATCTGGGATTAAAGAAAAGCTCTTGGAGAAGGCTTTTGGAATGAGTTCTAAGGAAATTTCCAAGTTGAAAAAGAAGCTTAGTCCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

216

Amino Acids

23.27

Weight (kDa)

9.24

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016937)

Species Orthologous Gene IDs
malus_domestica MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica Prupe.2G077100_v2.0.a1
pyrus_communis pycom02g21710 pycom07g04920
rosa_chinensis RchiOBHm_Chr1g0332401
rosa_laevigata RLG00000029673
rosa_multiflora Rmu_ssc0000161.1_g000016
rosa_roxburghii Rroxscaffold_4G00318210
rosa_rugosa Rorug01G0100500.1
rosa_samantha Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana Rw1G010120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 79
AclWI GGATC 5 cut(s) 71, 77, 90, 535, 565
AcsI RAATTY 3 cut(s) 203, 537, 612
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 4 cut(s) 299, 362, 467, 625
AjnI CCWGG 3 cut(s) 196, 253, 523
AluBI AGCT 5 cut(s) 57, 290, 545, 577, 634
AluI AGCT 5 cut(s) 57, 290, 545, 577, 634
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 458
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 5 cut(s) 71, 77, 90, 535, 565
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 3 cut(s) 203, 537, 612
Asp700I GAANNNNTTC 1 cut(s) 601
AspS9I GGNCC 2 cut(s) 209, 336
AsuHPI GGTGA 3 cut(s) 440, 445, 491
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 462
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 532
BccI CCATC 2 cut(s) 336, 430
BciT130I CCWGG 3 cut(s) 198, 255, 525
BcoDI GTCTC 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 198, 255, 525
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 209, 336
BmiI GGNNCC 2 cut(s) 84, 195
BmrFI CCNGG 3 cut(s) 198, 255, 525
BpiI GAAGAC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 253, 332, 446
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 3 cut(s) 198, 255, 525
BseDI CCNNGG 3 cut(s) 253, 332, 446
BseGI GGATG 3 cut(s) 42, 149, 328
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 222, 462
Bsp13I TCCGGA 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 4 cut(s) 76, 82, 527, 557
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 84, 195
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 5 cut(s) 71, 77, 90, 535, 565
BspTNI GGTCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 253, 332, 446
BssMI GATC 4 cut(s) 76, 82, 527, 557
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 2 cut(s) 332, 446
Bst2BI CACGAG 1 cut(s) 455
Bst2UI CCWGG 3 cut(s) 198, 255, 525
Bst4CI ACNGT 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 124, 184
BstDEI CTNAG 3 cut(s) 342, 606, 635
BstF5I GGATG 3 cut(s) 42, 149, 328
BstKTI GATC 4 cut(s) 79, 85, 530, 560
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 4 cut(s) 76, 82, 527, 557
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 3 cut(s) 198, 255, 525
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 196, 253, 523
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 532
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 82, 557
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 2 cut(s) 82, 557
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 3 cut(s) 42, 149, 328
BtsIMutI CAGTG 2 cut(s) 240, 339
Cac8I GCNNGC 2 cut(s) 124, 184
CaiI CAGNNNCTG 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 209, 336
Csp6I GTAC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 3 cut(s) 13, 128, 274
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 342, 606, 635
DpnI GATC 4 cut(s) 78, 84, 529, 559
DpnII GATC 4 cut(s) 76, 82, 527, 557
Eco130I CCWWGG 2 cut(s) 332, 446
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 3 cut(s) 196, 253, 523
EcoT14I CCWWGG 2 cut(s) 332, 446
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 332, 446
FaeI CATG 3 cut(s) 16, 131, 277
FaiI YATR 8 cut(s) 14, 60, 104, 129, 178, 180, 275, 497
FaqI GGGAC 1 cut(s) 624
FatI CATG 3 cut(s) 12, 127, 273
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 3 cut(s) 29, 136, 315
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 546
GluI GCNGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 80
Hin1II CATG 3 cut(s) 16, 131, 277
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 80
HphI GGTGA 3 cut(s) 440, 445, 491
Hpy166II GTNNAC 2 cut(s) 238, 460
Hpy188I TCNGA 3 cut(s) 76, 287, 557
Hpy188III TCNNGA 2 cut(s) 80, 92
Hpy8I GTNNAC 2 cut(s) 238, 460
HpyAV CCTTC 3 cut(s) 356, 418, 580
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 8 cut(s) 6, 102, 122, 141, 227, 350, 460, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 342, 606, 635
Hsp92II CATG 3 cut(s) 16, 131, 277
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 76, 82, 527, 557
Lsp1109I GCAGC 1 cut(s) 532
MaeIII GTNAC 3 cut(s) 61, 157, 276
MalI GATC 4 cut(s) 78, 84, 529, 559
MboI GATC 4 cut(s) 76, 82, 527, 557
MboII GAAGA 2 cut(s) 179, 241
MflI RGATCY 2 cut(s) 82, 557
MhlI GDGCHC 2 cut(s) 222, 462
MluCI AATT 4 cut(s) 203, 537, 549, 612
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 3 cut(s) 56, 59, 424
MroI TCCGGA 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 4 cut(s) 189, 260, 420, 567
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 198, 255, 525
MvaI CCWGG 3 cut(s) 198, 255, 525
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 4 cut(s) 76, 82, 527, 557
NlaIII CATG 3 cut(s) 16, 131, 277
NlaIV GGNNCC 2 cut(s) 84, 195
NmuCI GTSAC 2 cut(s) 61, 276
NspI RCATGY 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 116
PfoI TCCNGGA 2 cut(s) 196, 523
PkrI GCNGC 1 cut(s) 547
Psp6I CCWGG 3 cut(s) 196, 253, 523
PspGI CCWGG 3 cut(s) 196, 253, 523
PspN4I GGNNCC 2 cut(s) 84, 195
PspPI GGNCC 2 cut(s) 209, 336
PstI CTGCAG 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 82, 557
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 4 cut(s) 189, 260, 420, 567
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 4 cut(s) 76, 82, 527, 557
Sau96I GGNCC 2 cut(s) 209, 336
ScrFI CCNGG 3 cut(s) 198, 255, 525
SduI GDGCHC 2 cut(s) 222, 462
SetI ASST 8 cut(s) 59, 195, 292, 405, 435, 547, 579, 636
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 209
Sse9I AATT 4 cut(s) 203, 537, 549, 612
StyD4I CCNGG 3 cut(s) 196, 253, 523
StyI CCWWGG 2 cut(s) 332, 446
TaaI ACNGT 1 cut(s) 163
TasI AATT 4 cut(s) 203, 537, 549, 612
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 4 cut(s) 189, 260, 420, 567
Tru9I TTAA 4 cut(s) 189, 260, 420, 567
TscAI CASTG 2 cut(s) 240, 346
TseFI GTSAC 2 cut(s) 61, 276
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 2 cut(s) 61, 276
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 2 cut(s) 240, 346
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 3 cut(s) 203, 537, 612
XceI RCATGY 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.