Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016937

Physical Location & Seq

Genomic Coordinates Forward (+)

26970295 .. 26970927

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTAATTCTTTTTGTGATCTTCCTCAACATCTATGTCAGTTTGGCTTCTGATCCGGATCCGGTCCAAGACTTCTGCATAGCCAACACAGCAGAATCTGCAACTGCAAGCAATGCCATCCAATGCAAGAATTCATCCCTTGCAACAGTAGAAGATTTTGTATATTCTGGCATCAAGTCTCCTGGAAAATTTGGCCAAACAGGTCTTTCTGCCATTTCAGTGAACTCAAATGTCTTTCCAGGACTGAACACACTTGGAATGTCATTTGTCCGAGCTGATTTTGAAGTTGGTGGTGTAAATGTGCCTCATTACCATCCGAGGGCAACGGAGACAGCCTTTGTGCTTGAAGGAAAGATTTATTCCGGATTTGTTGATACGAATAACAAGATTTTCGCTAAAGTGATCGAAAGGGGTGAGGTCATGGTATTTCCAAAAGGGTTAGTGCACTTCCAAATGAATGTTGGTGACACTCCAGCAACCATATTGGGGAGCTTCAACAGCCAAAATCCTGGATTGCAAAGAATTCCCACTTCAATTTTCGGATCCGGGATCAAAGATGAGCTCTTGGAGAAGGCTTTTGGATTGAGTTCTAAGGAGATTGCCAAGTTGAAAAAGAAGCTTAGTCCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

210

Amino Acids

22.59

Weight (kDa)

6.9

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	58 - 200	1e-42	Cupin
Cupin_2	PF07883	92 - 162	7.9e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016937)

Species	Orthologous Gene IDs
malus_domestica	MD02G1256600.v1.1 MD07G1063800.v1.1
prunus_persica	Prupe.2G077100_v2.0.a1
pyrus_communis	pycom02g21710 pycom07g04920
rosa_chinensis	RchiOBHm_Chr1g0332401
rosa_laevigata	RLG00000029673
rosa_multiflora	Rmu_ssc0000161.1_g000016
rosa_roxburghii	Rroxscaffold_4G00318210
rosa_rugosa	Rorug01G0100500.1
rosa_samantha	Rh1AG124400 Rh1CG118600 Rh1DG129500
rosa_wichuraiana	Rw1G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	55, 362
AclWI	GGATC	6 cut(s)	47, 53, 66, 537, 550, 557
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	130, 188, 522
AfiI	CCNNNNNNNGG	2 cut(s)	319, 486
AgsI	TTSAA	5 cut(s)	284, 347, 496, 534, 610
AjnI	CCWGG	3 cut(s)	181, 238, 508
AluBI	AGCT	4 cut(s)	275, 492, 562, 619
AluI	AGCT	4 cut(s)	275, 492, 562, 619
Alw21I	GWGCWC	2 cut(s)	447, 564
Alw26I	GTCTC	2 cut(s)	183, 323
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	6 cut(s)	47, 53, 66, 537, 550, 557
AlwNI	CAGNNNCTG	1 cut(s)	98
Aor13HI	TCCGGA	2 cut(s)	55, 362
AoxI	GGCC	1 cut(s)	193
ApaLI	GTGCAC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	130, 188, 522
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	425, 476
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	195
BamHI	GGATCC	2 cut(s)	58, 542
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	447, 564
BccI	CCATC	2 cut(s)	125, 321
BciT130I	CCWGG	3 cut(s)	183, 240, 510
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	183, 323
Bme1390I	CCNGG	4 cut(s)	183, 240, 510, 547
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	60, 544
BmrFI	CCNGG	4 cut(s)	183, 240, 510, 547
BmsI	GCATC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	3 cut(s)	55, 61, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 486
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	57
BseAI	TCCGGA	2 cut(s)	55, 362
BseBI	CCWGG	3 cut(s)	183, 240, 510
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	117, 134, 313
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	319, 486
BseMI	GCAATG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	447
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	447, 564
BsiSI	CCGG	4 cut(s)	56, 62, 363, 546
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	2 cut(s)	319, 486
BsmAI	GTCTC	2 cut(s)	183, 323
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	447, 564
Bsp13I	TCCGGA	2 cut(s)	55, 362
Bsp143I	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
BspANI	GGCC	1 cut(s)	195
BspEI	TCCGGA	2 cut(s)	55, 362
BspLI	GGNNCC	2 cut(s)	60, 544
BspPI	GGATC	6 cut(s)	47, 53, 66, 537, 550, 557
BsrDI	GCAATG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
Bst2UI	CCWGG	3 cut(s)	183, 240, 510
Bst4CI	ACNGT	1 cut(s)	148
BstAPI	GCANNNNNTGC	2 cut(s)	98, 113
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	591, 620
BstF5I	GGATG	3 cut(s)	117, 134, 313
BstKTI	GATC	6 cut(s)	21, 55, 61, 405, 545, 552
BstMAI	GTCTC	2 cut(s)	183, 323
BstMBI	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 98, 113, 498
BstNI	CCWGG	3 cut(s)	183, 240, 510
BstSCI	CCNGG	4 cut(s)	181, 238, 508, 545
BstSLI	GKGCMC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	58, 542
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	2 cut(s)	58, 542
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	117, 134, 313
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	591, 620
DpnI	GATC	6 cut(s)	20, 54, 60, 404, 544, 551
DpnII	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
EaeI	YGGCCR	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	562
EcoRI	GAATTC	2 cut(s)	130, 522
EcoRII	CCWGG	3 cut(s)	181, 238, 508
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	1 cut(s)	424
FaiI	YATR	5 cut(s)	36, 80, 163, 422, 482
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	1 cut(s)	420
FokI	GGATG	3 cut(s)	104, 121, 300
FriOI	GRGCYC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	4 cut(s)	56, 62, 363, 546
Hin1II	CATG	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	4 cut(s)	56, 62, 363, 546
HphI	GGTGA	2 cut(s)	425, 476
Hpy166II	GTNNAC	2 cut(s)	223, 445
Hpy188I	TCNGA	4 cut(s)	52, 272, 318, 542
Hpy188III	TCNNGA	2 cut(s)	56, 363
Hpy8I	GTNNAC	2 cut(s)	223, 445
HpyAV	CCTTC	2 cut(s)	341, 565
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	7 cut(s)	78, 101, 107, 126, 143, 445, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 98, 113, 498
HpyF3I	CTNAG	2 cut(s)	591, 620
Hsp92II	CATG	1 cut(s)	424
Kpn2I	TCCGGA	2 cut(s)	55, 362
Kzo9I	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
LmnI	GCTCC	1 cut(s)	489
LweI	GCATC	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	6 cut(s)	20, 54, 60, 404, 544, 551
MboI	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
MboII	GAAGA	2 cut(s)	13, 164
MflI	RGATCY	2 cut(s)	58, 542
MhlI	GDGCHC	2 cut(s)	447, 564
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	6, 130, 188, 522, 534
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	4 cut(s)	35, 312, 315, 409
Mox20I	TGGCCA	1 cut(s)	195
MroI	TCCGGA	2 cut(s)	55, 362
MscI	TGGCCA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	4 cut(s)	56, 62, 363, 546
MspR9I	CCNGG	4 cut(s)	183, 240, 510, 547
MvaI	CCWGG	3 cut(s)	183, 240, 510
MwoI	GCNNNNNNNGC	4 cut(s)	89, 98, 113, 498
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	2 cut(s)	60, 544
NmuCI	GTSAC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	95
PfoI	TCCNGGA	4 cut(s)	181, 238, 508, 545
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	181, 238, 508
PspGI	CCWGG	3 cut(s)	181, 238, 508
PspN4I	GGNNCC	2 cut(s)	60, 544
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	58, 542
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	564
Sau3AI	GATC	6 cut(s)	18, 52, 58, 402, 542, 549
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	4 cut(s)	183, 240, 510, 547
SduI	GDGCHC	2 cut(s)	447, 564
SetI	ASST	6 cut(s)	205, 277, 420, 494, 564, 621
SfaNI	GCATC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	6, 130, 188, 522, 534
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	4 cut(s)	181, 238, 508, 545
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	6, 130, 188, 522, 534
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	123, 470
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	225
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	3 cut(s)	130, 188, 522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.