MD03G1136200.v1.1

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016295
Physical Location & Seq
Reverse (-)
13678841 .. 13680262
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1136200.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGCCGCTGCATCTTCTTCTTCATCTTCTGCGGCATCAATGGGGTTGGATTTTGAACATGAAAAATTACCACATGTTTTGGCTGTTGATGATAGTTTTGTGGACCGTAAAATCATTGAGAAGTTACTCATCAAGTCTGCATGCAAAGAGGATGGACATGGAGCACTGGAGCTGTTGGGTTTGGCAGATGGGCAACAGAACTTCGCCAACACCGTTTCAAACGTAAACATGATAATCACTGATTACTGTATGCCGGGAATGACAGGGTATGAGCTACTAAAAAGAGTTAAGGAATCGCCAAAAGGGAAGGAGATACCAGTAGTTGTTGTATCATCTGAGAACATTCCTAGTCGAATCGAGAAGTGCCTTGAGGAAGGGGCTGAGGAGTTCTTGCTGAAGCCGCTCCGGCAAGCAGATGTCAAGAAACTGAAATGTCATTTAAGCGAGTTTCGAAACCCTAATGACGAAGGGAGAATTTGTTTGGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Response_reg

Protein Analysis

164

Amino Acids

17.89

Weight (kDa)

5.62

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 26 - 141 4.1e-16 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40540
malus_domestica MD03G1136200.v1.1 MD11G1053400.v1.1
prunus_persica Prupe.6G040900_v2.0.a1 Prupe.6G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073221
rosa_laevigata RLG00000036375
rosa_multiflora Rmu_sc0001887.1_g000013
rosa_roxburghii Rroxscaffold_1G00007970
rosa_rugosa Rorug05G0422400
rosa_samantha Rh5AG479100 Rh5BG499800 Rh5CG523000 Rh5DG511900
rosa_wichuraiana Rw5G044540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 403
AciI CCGC 3 cut(s) 6, 32, 401
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 56, 219
AluBI AGCT 2 cut(s) 172, 274
AluI AGCT 2 cut(s) 172, 274
Alw21I GWGCWC 1 cut(s) 166
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 381
BccI CCATC 2 cut(s) 146, 182
BcnI CCSGG 1 cut(s) 255
BfaI CTAG 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 406
BisI GCNGC 4 cut(s) 6, 9, 33, 401
BlsI GCNGC 4 cut(s) 7, 10, 34, 402
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 2 cut(s) 20, 44
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 1 cut(s) 463
Bse1I ACTGG 2 cut(s) 171, 317
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 327, 372
BseNI ACTGG 2 cut(s) 171, 317
BseRI GAGGAG 1 cut(s) 398
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 2 cut(s) 254, 406
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 166
BspACI CCGC 3 cut(s) 6, 32, 401
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 328, 373
BspT104I TTCGAA 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 403
BsrI ACTGG 2 cut(s) 171, 317
Bst4CI ACNGT 3 cut(s) 107, 214, 248
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 142, 411
BstDEI CTNAG 2 cut(s) 336, 381
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 400, 406
BstNSI RCATGY 2 cut(s) 77, 144
BstSCI CCNGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 164, 237
Cac8I GCNNGC 2 cut(s) 142, 411
Cfr13I GGNCC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 5 cut(s) 59, 74, 141, 158, 229
CviJI RGCY 6 cut(s) 5, 83, 172, 274, 380, 400
CviKI_1 RGCY 6 cut(s) 5, 83, 172, 274, 380, 400
DdeI CTNAG 2 cut(s) 336, 381
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 416
FaeI CATG 5 cut(s) 62, 77, 144, 161, 232
FaiI YATR 7 cut(s) 60, 75, 142, 159, 230, 251, 270
FatI CATG 5 cut(s) 58, 73, 140, 157, 228
Fnu4HI GCNGC 4 cut(s) 6, 9, 33, 401
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 6, 9, 33, 401
FspBI CTAG 1 cut(s) 348
GluI GCNGC 4 cut(s) 6, 9, 33, 401
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 254, 406
Hin1II CATG 5 cut(s) 62, 77, 144, 161, 232
HinfI GANTC 2 cut(s) 293, 354
HpaII CCGG 2 cut(s) 254, 406
Hpy166II GTNNAC 2 cut(s) 103, 226
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 2 cut(s) 358, 421
Hpy8I GTNNAC 2 cut(s) 103, 226
HpyAV CCTTC 3 cut(s) 301, 368, 461
HpyCH4III ACNGT 3 cut(s) 107, 214, 248
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 11, 140, 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 406
HpyF3I CTNAG 2 cut(s) 336, 381
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 5 cut(s) 62, 77, 144, 161, 232
LmnI GCTCC 3 cut(s) 161, 169, 408
LpnPI CCDG 5 cut(s) 152, 249, 267, 330, 419
LweI GCATC 2 cut(s) 20, 44
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 123
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 4 cut(s) 6, 9, 12, 18
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 2 cut(s) 65, 474
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 3 cut(s) 142, 364, 376
MseI TTAA 2 cut(s) 288, 440
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 254, 406
MspR9I CCNGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 400, 406
NciI CCSGG 1 cut(s) 255
NlaIII CATG 5 cut(s) 62, 77, 144, 161, 232
NspI RCATGY 2 cut(s) 77, 144
NspV TTCGAA 1 cut(s) 451
PaeI GCATGC 1 cut(s) 144
PciI ACATGT 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 293, 354
PkrI GCNGC 4 cut(s) 7, 10, 34, 402
PscI ACATGT 1 cut(s) 73
PspPI GGNCC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 288, 440
SatI GCNGC 4 cut(s) 6, 9, 33, 401
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 166
SetI ASST 3 cut(s) 174, 225, 276
SfaNI GCATC 2 cut(s) 20, 44
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SphI GCATGC 1 cut(s) 144
Sse9I AATT 2 cut(s) 65, 474
SsiI CCGC 3 cut(s) 6, 32, 401
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 107, 214, 248
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 352, 357, 451
TasI AATT 2 cut(s) 65, 474
TauI GCSGC 3 cut(s) 8, 35, 403
TfiI GAWTC 2 cut(s) 293, 354
Tru1I TTAA 2 cut(s) 288, 440
Tru9I TTAA 2 cut(s) 288, 440
TscAI CASTG 2 cut(s) 171, 244
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 12, 75
TspRI CASTG 2 cut(s) 171, 244
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 474
XceI RCATGY 2 cut(s) 77, 144
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.