Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002249

Physical Location & Seq

Genomic Coordinates Forward (+)

58710860 .. 58713461

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0422400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGACCCCCAAGAAAGGCACACCCCCCCCAAAGAAAACCAAAGAAGCACAGAGCAAGAACGACGGCAACAAAATCAAAAAGAAGACCAGCAATGGCACCGCTGCTGCGGCGGCGGCGGCTGTGAGATCCCCGAGCTCAAAGCCCCAGAAGAGCAGAGAGCAAAATGGGGGCAAAAGTACGAAAACACCCACCCCGAAATCCAAGAAGCCCCAGCAGAACGGAAAGCGAGTCCGGGAGGAAGAGGTGGAAGAGAAAGAGGATGTGAAGTCGTACACTTTTCCGATGGAGCGGGTTAAGAGGATTATCAGGGCCGAAGATTCCGACTTGCGCATCAGCTCCGACGCCGTTTTTCTCGTCAACAAAGCCACCGAGAAGTTCCTTGAGAAGTTTAGTGAAGATGCGCATAAATGTTGTGTTAAGGATCGCAAGAAGGCTCTTGCTTACAAGCACCTATCCTCAGTCGTTTGCAAACAAAAGAGATACGAGTTTCTTTCAGATTTTGTTCCTGAGAAAATAAAAGCCGGGGATGCATTGGCAAAGAGAAAACAAACCCAAGAAGGAACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

190

Amino Acids

21.2

Weight (kDa)

9.92

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	81 - 157	2.3e-11	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	93 - 156	7.9e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480
fragaria_vesca	FvH4_3g40550 FvH4_3g40550
malus_domestica	MD11G1053100.v1.1 MD11G1053200.v1.1 MD11G1053300.v1.1
prunus_persica	Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1
pyrus_communis	pycom11g04320
rosa_chinensis	RchiOBHm_Chr5g0073231
rosa_laevigata	RLG00000036376
rosa_multiflora	Rmu_sc0001887.1_g000014
rosa_roxburghii	Rroxscaffold_1G00007960
rosa_rugosa	Rorug05G0422400 Rorug05G0422500
rosa_samantha	Rh5AG479200 Rh5BG499900 Rh5CG523100 Rh5DG512000
rosa_wichuraiana	Rw5G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	332, 405
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	6 cut(s)	102, 110, 113, 116, 119, 292
AclWI	GGATC	2 cut(s)	123, 432
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	181, 275
AfiI	CCNNNNNNNGG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	138, 339, 570
AluI	AGCT	3 cut(s)	138, 339, 570
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	123, 432
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	104, 107
AspLEI	GCGC	2 cut(s)	333, 406
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	2 cut(s)	236, 526
AvaI	CYCGRG	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	91, 94
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	82, 332
BcnI	CCSGG	2 cut(s)	236, 526
BfaI	CTAG	1 cut(s)	571
BisI	GCNGC	6 cut(s)	105, 108, 111, 114, 117, 120
BlsI	GCNGC	6 cut(s)	106, 109, 112, 115, 118, 121
Bme1390I	CCNGG	2 cut(s)	236, 526
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	236, 526
BmsI	GCATC	3 cut(s)	342, 391, 520
BpiI	GAAGAC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	236, 526
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	268, 535
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	474, 501
BseXI	GCAGC	2 cut(s)	91, 94
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	235, 525
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	128, 424
BspACI	CCGC	6 cut(s)	102, 110, 113, 116, 119, 292
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	473, 502
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	123, 432
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	128, 424
BssNI	GRCGYC	1 cut(s)	345
Bst6I	CTCTTC	3 cut(s)	146, 237, 246
BstACI	GRCGYC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	460, 510
BstF5I	GGATG	2 cut(s)	268, 535
BstHHI	GCGC	2 cut(s)	333, 406
BstKTI	GATC	2 cut(s)	131, 427
BstMBI	GATC	2 cut(s)	128, 424
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 113, 116, 119, 530
BstSCI	CCNGG	2 cut(s)	234, 524
BstV1I	GCAGC	2 cut(s)	91, 94
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	268, 535
CfoI	GCGC	2 cut(s)	333, 406
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	180, 274
CviQI	GTAC	2 cut(s)	180, 274
DdeI	CTNAG	2 cut(s)	460, 510
DpnI	GATC	2 cut(s)	130, 426
DpnII	GATC	2 cut(s)	128, 424
Eam1104I	CTCTTC	3 cut(s)	146, 237, 246
EarI	CTCTTC	3 cut(s)	146, 237, 246
Ecl136II	GAGCTC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	140
FaiI	YATR	1 cut(s)	408
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	105, 108, 111, 114, 117, 120
FokI	GGATG	2 cut(s)	275, 542
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	6 cut(s)	105, 108, 111, 114, 117, 120
FspAI	RTGCGCAY	1 cut(s)	405
FspBI	CTAG	1 cut(s)	571
FspI	TGCGCA	2 cut(s)	332, 405
GlaI	GCGC	2 cut(s)	332, 405
GluI	GCNGC	6 cut(s)	105, 108, 111, 114, 117, 120
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	235, 525
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	333, 406
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	2 cut(s)	331, 404
HinP1I	GCGC	2 cut(s)	331, 404
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	231, 320
HpaII	CCGG	2 cut(s)	235, 525
Hpy166II	GTNNAC	2 cut(s)	276, 361
Hpy188I	TCNGA	4 cut(s)	285, 325, 343, 499
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	2 cut(s)	276, 361
Hpy99I	CGWCG	2 cut(s)	68, 347
HpyAV	CCTTC	2 cut(s)	427, 554
HpyCH4V	TGCA	2 cut(s)	471, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 113, 116, 119, 530
HpyF3I	CTNAG	2 cut(s)	460, 510
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	2 cut(s)	331, 404
Kzo9I	GATC	2 cut(s)	128, 424
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	289, 344
LpnPI	CCDG	7 cut(s)	103, 161, 227, 248, 295, 522, 538
Lsp1109I	GCAGC	2 cut(s)	91, 94
LweI	GCATC	3 cut(s)	342, 391, 520
MaeI	CTAG	1 cut(s)	571
MalI	GATC	2 cut(s)	130, 426
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	2 cut(s)	128, 424
MboII	GAAGA	6 cut(s)	97, 163, 254, 263, 329, 410
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	2 cut(s)	348, 366
MnlI	CCTC	5 cut(s)	232, 238, 253, 294, 469
Mph1103I	ATGCAT	1 cut(s)	535
MseI	TTAA	2 cut(s)	297, 420
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	235, 525
MspR9I	CCNGG	2 cut(s)	236, 526
MwoI	GCNNNNNNNGC	5 cut(s)	110, 113, 116, 119, 530
NciI	CCSGG	2 cut(s)	236, 526
NdeII	GATC	2 cut(s)	128, 424
NlaIV	GGNNCC	1 cut(s)	100
NsbI	TGCGCA	2 cut(s)	332, 405
NsiI	ATGCAT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	6 cut(s)	106, 109, 112, 115, 118, 121
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	181, 275
RsaNI	GTAC	2 cut(s)	180, 274
SacI	GAGCTC	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	297, 420
SatI	GCNGC	6 cut(s)	105, 108, 111, 114, 117, 120
Sau3AI	GATC	2 cut(s)	128, 424
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	236, 526
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	5 cut(s)	140, 249, 341, 456, 572
SfaNI	GCATC	3 cut(s)	342, 391, 520
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SsiI	CCGC	6 cut(s)	102, 110, 113, 116, 119, 292
SspMI	CTAG	1 cut(s)	571
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	234, 524
TauI	GCSGC	4 cut(s)	113, 116, 119, 122
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	297, 420
Tru9I	TTAA	2 cut(s)	297, 420
TseI	GCWGC	2 cut(s)	104, 107
TspGWI	ACGGA	1 cut(s)	237
XspI	CTAG	1 cut(s)	571
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.