Rmu_sc0001887.1_g000014

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001887.1
Physical Location & Seq
Reverse (-)
61339 .. 67981
6643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001887.1_g000014.1.cds

Sequence Viewer

Length: 1965 bp
atgcggcaaaactatatgaaccggagtcaaaaccaaaattccaaaagccctgcctcttcttcttcttcttcatatctccatgttcaatctgaaccgcaaaaccactccccgctacttcgctttcgcccttcttcttctctacgtgtcgtcatcgccgccgtcctcatcatcatcaccgccgccgccgtcactctctctccggatcagaaaaccaagcctccgagtggtaccgaatcactgagtcggtgctctccaaccggagctgaatcaggcttccattcggaggttgcatctccaaaaaaggctatcgctactgctcctgataatcacagaaagtctttcaatgaaatgtattctaaaccgcataactcaaggacacctgttgagcagctttcagagtcttgtgtgcttgattttttcggcaatgatggattggaggatgactatgtagaaggaagtccagtccatgaagctcacgttgcattttcagttgaaggtttgggaaaagtgggaatggaaacaccggtccattcaccaaaacaacctggaaggaccttctcctatgattgctccatgccattgcacggttcaaggaaagtaaactcattcaagaacttgaagcgtctggatgatattgaaattgaaatggacacagtaatgcaagatgtcactatgccccttagtagcaatgatttagagttctctgaggatttaatggattcattcagtaatccaaagaagacattctccactttcagaaattgcacacaatatgatggtcatgatagtaaatttgaaacctattatggaggcagaagaatatttgacgatattgaaaacggcaacaaagacagatgggatgtgagggtcaatgcaactgatgagtcgctgccaaagtcaaccagaaagcacagtaagagaagacatggcaattcatatgccgaccctgaacataaatatcatgtggacataacttctatggaaaggacacaagacagaagcagggatttttttcaacagaagaatattgcacatggatcagggagatgtacaaatatgtcaaaatcatcaaagtttaaaccctcccaccactcaaacactcctttccacgaaaagtcaaccccaaacagcaattggaggtctgaggaaagatacatgtcagttgatataaattcgggttccagttctttccatcaaaattcctgtccatcagcaggctctaagcctttgtctcgagatcctttcagtgcattcgattgccccgaattacatgtggatgccagaccttcagaacactgtgaacctgttgcaagttcaccttcaggcagttttatctctcagaaattttcatttcatgactctcctcctgtaacctctaacattgggtgtggaccaacaaaaccaaatctttatccatgttcacatgatcagaccccatctcctgatttgtcagcacaagaaagttttagcaaggccgaggagggaaaagtgaaattccagcccaaagaaaaatctagactggaggaagaaaatgctattctgaacaacttgctcacagaaagtgtagatgcagcaagtgctttacgatcaaagaacaagtacagtgaatgcaagaaagcaaaggatgcagattcaggacaaaatgagggaagtataaaagcaacctatatgcctgaccatactgaggaggcatcatcgtttttgaagagtccagataaaattcaaaacacagtggatgaaaaagattttcaaatttctgatctgatcactatgattcattcatttgctaatacagagatggaagattctgagcctcaggaaagaaagaaggaaagtaaacagcaaagtgaattcgttgactcatcttctcaggttctgatgcttcagagctatgttcttcagtttctttgtgtgcagaaggtattgaaggacgcagctgcacagaatagcatgaagaaaatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

654

Amino Acids

73.08

Weight (kDa)

6.22

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 8 cut(s) 4, 95, 110, 156, 177, 180, 183, 362
AclWI GGATC 3 cut(s) 210, 1045, 1232
AcsI RAATTY 9 cut(s) 37, 791, 1171, 1198, 1343, 1493, 1719, 1752, 1850
AcuI CTGAAG 4 cut(s) 1272, 1305, 1868, 1883
AfaI GTAC 3 cut(s) 229, 1051, 1601
AfiI CCNNNNNNNGG 5 cut(s) 224, 283, 584, 1214, 1684
AflIII ACRYGT 3 cut(s) 142, 1155, 1270
AgeI ACCGGT 1 cut(s) 523
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 5 cut(s) 263, 391, 473, 1890, 1937
AluI AGCT 5 cut(s) 263, 391, 473, 1890, 1937
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 1236
AlwI GGATC 3 cut(s) 210, 1045, 1232
AlwNI CAGNNNCTG 1 cut(s) 1876
Ama87I CYCGRG 1 cut(s) 1233
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 1 cut(s) 1473
ApeKI GCWGC 5 cut(s) 388, 889, 1571, 1934, 1937
ApoI RAATTY 9 cut(s) 37, 791, 1171, 1198, 1343, 1493, 1719, 1752, 1850
ArsI GACNNNNNNTTYG 2 cut(s) 1189, 1221
AsiGI ACCGGT 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 743
Asp718I GGTACC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 526, 552, 1391
AsuHPI GGTGA 3 cut(s) 166, 525, 1308
AvaI CYCGRG 1 cut(s) 1233
AvaII GGWCC 3 cut(s) 526, 552, 1391
AxyI CCTNAGG 1 cut(s) 1815
BanI GGYRCC 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 746, 928
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 5 cut(s) 400, 876, 1583, 1924, 1946
BccI CCATC 7 cut(s) 422, 770, 849, 1200, 1216, 1444, 1792
BceAI ACGGC 3 cut(s) 143, 170, 856
BciT130I CCWGG 1 cut(s) 546
BclI TGATCA 2 cut(s) 1426, 1764
BcoDI GTCTC 1 cut(s) 1236
BfaI CTAG 1 cut(s) 1515
BisI GCNGC 9 cut(s) 5, 156, 180, 183, 389, 890, 1572, 1935, 1938
BlsI GCNGC 9 cut(s) 6, 157, 181, 184, 390, 891, 1573, 1936, 1939
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 3 cut(s) 526, 552, 1391
BmeT110I CYCGRG 1 cut(s) 1233
BmgT120I GGNCC 3 cut(s) 526, 552, 1391
BmiI GGNNCC 2 cut(s) 229, 1180
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 6 cut(s) 299, 1267, 1558, 1615, 1700, 1869
BpiI GAAGAC 2 cut(s) 746, 928
BpmI CTGGAG 1 cut(s) 1541
BpuEI CTTGAG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 1476
BsaWI WCCGGW 4 cut(s) 21, 199, 257, 523
BsaXI ACNNNNNCTCC 6 cut(s) 181, 202, 211, 232, 1423, 1453
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 283, 584, 1214, 1684
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 3 cut(s) 461, 1182, 1524
Bse21I CCTNAGG 1 cut(s) 1815
Bse3DI GCAATG 3 cut(s) 430, 578, 694
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 1476
BseGI GGATG 6 cut(s) 445, 634, 865, 1282, 1630, 1741
BseLI CCNNNNNNNGG 5 cut(s) 224, 283, 584, 1214, 1684
BseMI GCAATG 3 cut(s) 430, 578, 694
BseMII CTCAG 8 cut(s) 230, 696, 1134, 1352, 1674, 1800, 1829, 1883
BseNI ACTGG 3 cut(s) 461, 1182, 1524
BseRI GAGGAG 3 cut(s) 1353, 1493, 1700
BseXI GCAGC 5 cut(s) 400, 876, 1583, 1924, 1946
BsgI GTGCAG 2 cut(s) 1923, 1934
BshFI GGCC 1 cut(s) 1475
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 1233
BsiSI CCGG 4 cut(s) 22, 200, 258, 524
BslI CCNNNNNNNGG 5 cut(s) 224, 283, 584, 1214, 1684
BsmAI GTCTC 1 cut(s) 1236
BsmI GAATGC 2 cut(s) 1250, 1613
BsnI GGCC 1 cut(s) 1475
BsoBI CYCGRG 1 cut(s) 1233
Bsp1286I GDGCHC 1 cut(s) 251
Bsp13I TCCGGA 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 1049
Bsp143I GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
BspACI CCGC 8 cut(s) 4, 95, 110, 156, 177, 180, 183, 362
BspANI GGCC 1 cut(s) 1475
BspCNI CTCAG 8 cut(s) 231, 697, 1135, 1351, 1675, 1801, 1828, 1882
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 2 cut(s) 781, 1354
BspLI GGNNCC 2 cut(s) 229, 1180
BspPI GGATC 3 cut(s) 210, 1045, 1232
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 3 cut(s) 430, 578, 694
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 1049
BsrI ACTGG 3 cut(s) 461, 1182, 1524
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 1476
BssMI GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 6 cut(s) 587, 655, 914, 1298, 1604, 1732
Bst6I CTCTTC 2 cut(s) 61, 1700
BstAPI GCANNNNNTGC 2 cut(s) 1577, 1625
BstAUI TGTACA 1 cut(s) 1049
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 1216
BstF5I GGATG 6 cut(s) 445, 634, 865, 1282, 1630, 1741
BstKTI GATC 7 cut(s) 205, 1040, 1240, 1429, 1589, 1762, 1767
BstMAI GTCTC 1 cut(s) 1236
BstMBI GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
BstMWI GCNNNNNNNGC 3 cut(s) 479, 1577, 1625
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 2 cut(s) 1159, 1274
BstSCI CCNGG 1 cut(s) 544
BstV1I GCAGC 5 cut(s) 400, 876, 1583, 1924, 1946
BstV2I GAAGAC 2 cut(s) 746, 928
BstX2I RGATCY 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 1237
Bsu36I CCTNAGG 1 cut(s) 1815
BsuRI GGCC 1 cut(s) 1475
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 6 cut(s) 445, 634, 865, 1282, 1630, 1741
BtsIMutI CAGTG 5 cut(s) 236, 1252, 1294, 1609, 1737
Cac8I GCNNGC 1 cut(s) 1216
CaiI CAGNNNCTG 1 cut(s) 1876
CciI TCATGA 2 cut(s) 781, 1354
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 526, 552, 1391
CseI GACGC 2 cut(s) 611, 1940
Csp6I GTAC 3 cut(s) 228, 1050, 1600
CspAI ACCGGT 1 cut(s) 523
CviQI GTAC 3 cut(s) 228, 1050, 1600
DpnI GATC 7 cut(s) 204, 1039, 1239, 1428, 1588, 1761, 1766
DpnII GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
DraI TTTAAA 1 cut(s) 1078
Eam1104I CTCTTC 2 cut(s) 61, 1700
EarI CTCTTC 2 cut(s) 61, 1700
Eco47I GGWCC 3 cut(s) 526, 552, 1391
Eco57I CTGAAG 4 cut(s) 1272, 1305, 1868, 1883
Eco81I CCTNAGG 1 cut(s) 1815
Eco88I CYCGRG 1 cut(s) 1233
EcoO109I RGGNCCY 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 1850
EcoRII CCWGG 1 cut(s) 544
FalI AAGNNNNNCTT 2 cut(s) 1303, 1335
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 2 cut(s) 1426, 1764
Fnu4HI GCNGC 9 cut(s) 5, 156, 180, 183, 389, 890, 1572, 1935, 1938
FokI GGATG 6 cut(s) 452, 641, 872, 1289, 1637, 1748
Fsp4HI GCNGC 9 cut(s) 5, 156, 180, 183, 389, 890, 1572, 1935, 1938
FspBI CTAG 1 cut(s) 1515
GluI GCNGC 9 cut(s) 5, 156, 180, 183, 389, 890, 1572, 1935, 1938
GsuI CTGGAG 1 cut(s) 1541
HaeIII GGCC 1 cut(s) 1475
HapII CCGG 4 cut(s) 22, 200, 258, 524
HgaI GACGC 2 cut(s) 611, 1940
HincII GTYRAC 3 cut(s) 900, 1119, 1858
HindII GTYRAC 3 cut(s) 900, 1119, 1858
HpaII CCGG 4 cut(s) 22, 200, 258, 524
HphI GGTGA 3 cut(s) 166, 525, 1308
HpyCH4III ACNGT 6 cut(s) 587, 655, 914, 1298, 1604, 1732
HpyCH4IV ACGT 2 cut(s) 142, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 1577, 1625
HpySE526I ACGT 2 cut(s) 142, 477
Kpn2I TCCGGA 1 cut(s) 199
KpnI GGTACC 1 cut(s) 231
Ksp22I TGATCA 2 cut(s) 1426, 1764
Kzo9I GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
LmnI GCTCC 3 cut(s) 260, 322, 575
Lsp1109I GCAGC 5 cut(s) 400, 876, 1583, 1924, 1946
LweI GCATC 6 cut(s) 299, 1267, 1558, 1615, 1700, 1869
MaeI CTAG 1 cut(s) 1515
MaeII ACGT 2 cut(s) 142, 477
MaeIII GTNAC 3 cut(s) 187, 667, 1369
MalI GATC 7 cut(s) 204, 1039, 1239, 1428, 1588, 1761, 1766
MboI GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
MfeI CAATTG 1 cut(s) 1132
MflI RGATCY 1 cut(s) 1237
MhlI GDGCHC 1 cut(s) 251
MlyI GAGTC 7 cut(s) 34, 250, 407, 893, 1352, 1717, 1853
MmeI TCCRAC 1 cut(s) 278
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 2 cut(s) 713, 1077
MslI CAYNNNNRTG 2 cut(s) 656, 1275
MspA1I CMGCKG 1 cut(s) 1937
MspI CCGG 4 cut(s) 22, 200, 258, 524
MspR9I CCNGG 1 cut(s) 546
MssI GTTTAAAC 1 cut(s) 1078
MunI CAATTG 1 cut(s) 1132
Mva1269I GAATGC 2 cut(s) 1250, 1613
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 479, 1577, 1625
NdeI CATATG 1 cut(s) 937
NdeII GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
NlaIV GGNNCC 2 cut(s) 229, 1180
NmeAIII GCCGAG 1 cut(s) 1501
NmuCI GTSAC 2 cut(s) 187, 667
NspI RCATGY 2 cut(s) 1159, 1274
PaeR7I CTCGAG 1 cut(s) 1233
PagI TCATGA 2 cut(s) 781, 1354
PciI ACATGT 2 cut(s) 1155, 1270
PcsI WCGNNNNNNNCGW 1 cut(s) 1260
PctI GAATGC 2 cut(s) 1250, 1613
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 6 cut(s) 233, 266, 719, 1631, 1774, 1805
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 9 cut(s) 6, 157, 181, 184, 390, 891, 1573, 1936, 1939
PleI GAGTC 7 cut(s) 33, 249, 406, 892, 1352, 1716, 1853
PmeI GTTTAAAC 1 cut(s) 1078
PpsI GAGTC 7 cut(s) 33, 249, 406, 892, 1352, 1716, 1853
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 552
PscI ACATGT 2 cut(s) 1155, 1270
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 229, 1180
PspPI GGNCC 3 cut(s) 526, 552, 1391
PspPPI RGGWCCY 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 1876
PsuI RGATCY 1 cut(s) 1237
PvuII CAGCTG 1 cut(s) 1937
RsaI GTAC 3 cut(s) 229, 1051, 1601
RsaNI GTAC 3 cut(s) 228, 1050, 1600
RseI CAYNNNNRTG 2 cut(s) 656, 1275
SaqAI TTAA 2 cut(s) 713, 1077
SatI GCNGC 9 cut(s) 5, 156, 180, 183, 389, 890, 1572, 1935, 1938
Sau3AI GATC 7 cut(s) 202, 1037, 1237, 1426, 1586, 1759, 1764
Sau96I GGNCC 3 cut(s) 526, 552, 1391
SchI GAGTC 7 cut(s) 34, 250, 407, 893, 1352, 1717, 1853
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 6 cut(s) 299, 1267, 1558, 1615, 1700, 1869
Sfr274I CTCGAG 1 cut(s) 1233
SinI GGWCC 3 cut(s) 526, 552, 1391
SlaI CTCGAG 1 cut(s) 1233
SmiMI CAYNNNNRTG 2 cut(s) 656, 1275
SmlI CTYRAG 2 cut(s) 370, 1233
SmoI CTYRAG 2 cut(s) 370, 1233
SsiI CCGC 8 cut(s) 4, 95, 110, 156, 177, 180, 183, 362
SspI AATATT 2 cut(s) 822, 1027
SspMI CTAG 1 cut(s) 1515
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 6 cut(s) 587, 655, 914, 1298, 1604, 1732
TaiI ACGT 2 cut(s) 145, 480
TaqI TCGA 2 cut(s) 1234, 1254
TatI WGTACW 2 cut(s) 1049, 1599
TauI GCSGC 4 cut(s) 7, 158, 182, 185
TfiI GAWTC 6 cut(s) 233, 266, 719, 1631, 1774, 1805
Tru1I TTAA 2 cut(s) 713, 1077
Tru9I TTAA 2 cut(s) 713, 1077
TscAI CASTG 5 cut(s) 243, 1252, 1301, 1609, 1737
TseFI GTSAC 2 cut(s) 187, 667
TseI GCWGC 5 cut(s) 388, 889, 1571, 1934, 1937
Tsp45I GTSAC 2 cut(s) 187, 667
TspRI CASTG 5 cut(s) 243, 1252, 1301, 1609, 1737
VpaK11BI GGWCC 3 cut(s) 526, 552, 1391
XapI RAATTY 9 cut(s) 37, 791, 1171, 1198, 1343, 1493, 1719, 1752, 1850
XbaI TCTAGA 1 cut(s) 1514
XceI RCATGY 2 cut(s) 1159, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 1131
XhoI CTCGAG 1 cut(s) 1233
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 1 cut(s) 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.