Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002249

Physical Location & Seq

Genomic Coordinates Forward (+)

4520046 .. 4521357

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1053300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCAGATTCGTCGAAGTTCAAACCATTCCACCACTCAAACTCTCCTCTCCAGGAAAAGTTTACCCCAAACAGCAATTGGTTCCCTGAGGAAGGATATCTGTCGGTTGACAATAATTCAGGTTGCAGTTCTTTCCATCAAAAGTCAGAGACAAACTGCCCATCTGCAGGCTCTAAAATTTTGTTTGGAGATCCTTTCAGTGCAAGTCCTGTCCCAGAATTACATCTCAATCCTATATCTCATTTTAAACCCTGCGAACCTGTTGCAAGTTCACCTTCCGGCAGTTTGATTTCTGGGAACTTTGAATTTCATGACTCTCCTATGACCCCTAAGATTGGTTTTGGACCAAGACAACCAGAGTTCCCTTACTCTCATGGCGAGACACCATCTCTGGATTTATCAGCGCAGGAAAGTGTCAGCAAAGATGAGGGAGGAAAAGCTGAATCGCAGCCATGCCGAAAATCTAAGCTGGAGGAAGAACATTGTATTCTGAACAATTTGTTCACAGAAAATCAACGATGGAACAAGGACAGTGAATGTGAGGAAGTAAAAGATGCAGCTTCGGGACTAACAGCAAGCGTAAAACCAACCTTGCTTGAGCGGGCTGAGAAGACATCGTCATCTATGAACTCTCCAGCGAAATATAGAAGCATAATAGAAAAGAAAGAGGATTACTGTGGTAACGAAATTCCTATCCCATGTCTAAAAAGCAACGGAGAAATGGAAGAGGCTGAGCCTCAGGAAACGAAGAAAGAAAGTAAACAGCAAAGTGATTTTGTTGACTCGTCCTGTCGGGTGATGATGCTTCAGAGCTATGTTCAGTTTCTTTGTGTGCAGAAGGTACTGAAGGAGGCAGCTGCACACAACGGCATAAAGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.59

Weight (kDa)

5.47

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480 AT2G30480
fragaria_vesca	FvH4_3g40550 FvH4_3g40550
malus_domestica	MD11G1053100.v1.1 MD11G1053200.v1.1 MD11G1053300.v1.1
prunus_persica	Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1 Prupe.6G040800_v2.0.a1
pyrus_communis	pycom11g04320
rosa_chinensis	RchiOBHm_Chr5g0073231
rosa_laevigata	RLG00000036376
rosa_multiflora	Rmu_sc0001887.1_g000014
rosa_roxburghii	Rroxscaffold_1G00007960
rosa_rugosa	Rorug05G0422400 Rorug05G0422500
rosa_samantha	Rh5AG479200 Rh5BG499900 Rh5CG523100 Rh5DG512000
rosa_wichuraiana	Rw5G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	601
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	3 cut(s)	177, 305, 687
AcuI	CTGAAG	2 cut(s)	791, 866
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	3 cut(s)	92, 167, 335
AgsI	TTSAA	2 cut(s)	22, 305
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	5 cut(s)	440, 469, 560, 813, 857
AluI	AGCT	5 cut(s)	440, 469, 560, 813, 857
Alw26I	GTCTC	2 cut(s)	143, 374
AlwI	GGATC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	448, 557, 854, 857
ApoI	RAATTY	3 cut(s)	177, 305, 687
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	264, 808
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	2 cut(s)	87, 738
BbsI	GAAGAC	1 cut(s)	617
BbvI	GCAGC	4 cut(s)	460, 569, 844, 866
BccI	CCATC	4 cut(s)	144, 169, 394, 513
BceAI	ACGGC	1 cut(s)	883
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	143, 374
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	4 cut(s)	449, 558, 855, 858
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	4 cut(s)	450, 559, 856, 859
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	544, 792
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	3 cut(s)	35, 491, 618
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 167, 335
Bse21I	CCTNAGG	2 cut(s)	87, 738
BseBI	CCWGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	92, 167, 335
BseMII	CTCAG	4 cut(s)	78, 597, 723, 752
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	460, 569, 844, 866
BsgI	GTGCAG	2 cut(s)	843, 854
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	197, 579
BslI	CCNNNNNNNGG	3 cut(s)	92, 167, 335
BsmAI	GTCTC	2 cut(s)	143, 374
BsmFI	GGGAC	2 cut(s)	197, 579
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	1 cut(s)	601
BspCNI	CTCAG	4 cut(s)	79, 598, 724, 751
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	601
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	533, 677
Bst6I	CTCTTC	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	169, 577, 603
BstDEI	CTNAG	6 cut(s)	87, 330, 465, 606, 732, 738
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	143, 374
BstMBI	GATC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	460, 569, 844, 866
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	2 cut(s)	87, 738
BtsIMutI	CAGTG	2 cut(s)	205, 538
Cac8I	GCNNGC	3 cut(s)	169, 577, 603
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	4 cut(s)	311, 374, 453, 699
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	6 cut(s)	87, 330, 465, 606, 732, 738
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	791, 866
Eco81I	CCTNAGG	2 cut(s)	87, 738
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	98
FaeI	CATG	4 cut(s)	314, 377, 456, 702
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FaqI	GGGAC	2 cut(s)	197, 579
FatI	CATG	4 cut(s)	310, 373, 452, 698
FauI	CCCGC	1 cut(s)	594
Fnu4HI	GCNGC	4 cut(s)	449, 558, 855, 858
Fsp4HI	GCNGC	4 cut(s)	449, 558, 855, 858
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	449, 558, 855, 858
GsuI	CTGGAG	3 cut(s)	35, 491, 618
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	4 cut(s)	314, 377, 456, 702
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	109, 781
HindII	GTYRAC	2 cut(s)	109, 781
HinfI	GANTC	4 cut(s)	8, 314, 443, 782
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	264, 808
Hpy166II	GTNNAC	6 cut(s)	63, 109, 272, 504, 761, 781
Hpy188I	TCNGA	3 cut(s)	148, 492, 810
Hpy188III	TCNNGA	4 cut(s)	311, 392, 564, 740
Hpy8I	GTNNAC	6 cut(s)	63, 109, 272, 504, 761, 781
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	86, 285, 832, 841
HpyCH4III	ACNGT	2 cut(s)	533, 677
HpyCH4V	TGCA	7 cut(s)	126, 167, 203, 266, 557, 835, 860
HpyF3I	CTNAG	6 cut(s)	87, 330, 465, 606, 732, 738
Hsp92II	CATG	4 cut(s)	314, 377, 456, 702
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	460, 569, 844, 866
LweI	GCATC	2 cut(s)	544, 792
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	1 cut(s)	192
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	488, 622, 737, 760
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	7 cut(s)	76, 115, 177, 218, 305, 496, 687
MlyI	GAGTC	2 cut(s)	308, 776
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	4 cut(s)	314, 377, 456, 702
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	8, 443
PflFI	GACNNNGTC	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	450, 559, 856, 859
PleI	GAGTC	2 cut(s)	308, 776
PpsI	GAGTC	2 cut(s)	308, 776
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	449, 558, 855, 858
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	308, 776
ScrFI	CCNGG	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	544, 792
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	7 cut(s)	76, 115, 177, 218, 305, 496, 687
SsiI	CCGC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	533, 677
TaqI	TCGA	1 cut(s)	14
TasI	AATT	7 cut(s)	76, 115, 177, 218, 305, 496, 687
TfiI	GAWTC	2 cut(s)	8, 443
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	205, 538
TseI	GCWGC	4 cut(s)	448, 557, 854, 857
TspDTI	ATGAA	2 cut(s)	299, 641
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	2 cut(s)	205, 538
Tth111I	GACNNNGTC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	3 cut(s)	177, 305, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.