MD11G1053200.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002249
Physical Location & Seq
Forward (+)
4516638 .. 4519044
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1053200.v1.1.491

Sequence Viewer

Length: 441 bp
ATGGATGCAATGATGCAAGATATCAATATTCCCCCATATAGCAGTGCTTTAGAGTTTTCTCCTGATCCAATGGATTCATTCAGTAGTTCAAAGCAAACTCTATCAAAGGATGATGGTCACAGTGGTAGATTAGATAGTTATTATGGATGCAGAAGAATCTTTGACGATGCTGAAAATTTCAGAAAAGATAAATGGGATGGTCGGCCTTGTTTCCCAGAGGAATACACTTTTAATGAATGGGAACATGATTTATCATGGAAGAACTGGCAAAGTCAAATGAACTGTGTTTCTGATGATAATTTGATGCACGAAAAGTACAAGATGTCAGATTTTGCTTTTGAAGGACCCTTTTCACCGATAAGGTCTGCTACAGGCATCACACACAAGTTCGACGTCTTAGGTGCTCTCTGTCTGAAACTCCTAATTGAACTATGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.95

Weight (kDa)

4.7

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 3 cut(s) 90, 341, 428
Alw21I GWGCWC 1 cut(s) 406
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 345
AvaII GGWCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 406
BccI CCATC 2 cut(s) 107, 191
BfmI CTRYAG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 5 cut(s) 3, 137, 157, 294, 384
BsaHI GRCGYC 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 15
BseGI GGATG 4 cut(s) 10, 115, 152, 202
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 269
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 406
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 269
BssMI GATC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 122, 284
BstACI GRCGYC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 397
BstF5I GGATG 4 cut(s) 10, 115, 152, 202
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 4 cut(s) 10, 115, 152, 202
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 127
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 245, 255
CviJI RGCY 1 cut(s) 205
CviKI_1 RGCY 1 cut(s) 205
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 397
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 344
EcoRV GATATC 1 cut(s) 22
FaeI CATG 2 cut(s) 248, 258
FaiI YATR 6 cut(s) 37, 39, 144, 246, 256, 433
FatI CATG 2 cut(s) 244, 254
FokI GGATG 4 cut(s) 17, 122, 159, 209
HaeIII GGCC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 2 cut(s) 248, 258
HinfI GANTC 2 cut(s) 74, 156
HphI GGTGA 1 cut(s) 345
Hpy188I TCNGA 4 cut(s) 182, 292, 328, 414
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 122, 284
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 8, 16, 150, 307
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 248, 258
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 75, 228, 250, 357
LweI GCATC 5 cut(s) 3, 137, 157, 294, 384
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 165, 271
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 175, 298, 423
MnlI CCTC 1 cut(s) 211
MseI TTAA 1 cut(s) 231
NdeII GATC 1 cut(s) 64
NlaIII CATG 2 cut(s) 248, 258
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 74, 156
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 344
PspPPI RGGWCCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 344
SduI GDGCHC 1 cut(s) 406
SetI ASST 3 cut(s) 365, 396, 403
SfaNI GCATC 5 cut(s) 3, 137, 157, 294, 384
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 344
Sse9I AATT 3 cut(s) 175, 298, 423
SspI AATATT 1 cut(s) 28
TaaI ACNGT 2 cut(s) 122, 284
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 390
TasI AATT 3 cut(s) 175, 298, 423
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 74, 156
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 49, 127
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 66, 249, 293
TspRI CASTG 2 cut(s) 49, 127
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 175
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.