Rroxscaffold_1G00007970

response regulator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
10162580 .. 10164039
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007970.1

Sequence Viewer

Length: 396 bp
ATGTCTGCAGTAAGAATGGGGATAAATAGGGATGAAAAGCCACATGTTTTGGCTGTTGATGATAGCGTTTTGGACCGTAAAATCATCGAGAGGTTACTCACCAATTCTTCATGCAAAGTGACTACAGCGGAGGATGCACATGGAGCACTGGAGTTGTTGGGTTTGGCAGATGGGCAACAGAACTTCTCTAACACCGAATCACCAACGGCGAAGGAGATACCAGTAGTTGTTGTATCATCTGAGAACATACAGACTCGAATTGAAAAGTGCCTTGAGGAAGGTGCTGAAGAGTTCTTGCTGAAGCCTCTCCGACAGTCGGATGTTAAAAGATTGAGATGCCATCTAACAAAGGATGGAAACCCTACTGATGAGGGGATGCTCTGTGTGGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.44

Weight (kDa)

5.22

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016295)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AcuI CTGAAG 2 cut(s) 306, 320
AfiI CCNNNNNNNGG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 91, 192
AvaII GGWCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 3 cut(s) 164, 347, 348
BceAI ACGGC 1 cut(s) 222
BfmI CTRYAG 2 cut(s) 6, 123
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmsI GCATC 3 cut(s) 124, 326, 366
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 153, 221
BseGI GGATG 5 cut(s) 37, 139, 325, 358, 381
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 153, 221
BsiHKAI GWGCWC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 2 cut(s) 153, 221
Bst4CI ACNGT 2 cut(s) 77, 315
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 5 cut(s) 37, 139, 325, 358, 381
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNSI RCATGY 1 cut(s) 47
BstSFI CTRYAG 2 cut(s) 6, 123
BtsCI GGATG 5 cut(s) 37, 139, 325, 358, 381
BtsIMutI CAGTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 3 cut(s) 44, 111, 140
CviJI RGCY 3 cut(s) 40, 53, 304
CviKI_1 RGCY 3 cut(s) 40, 53, 304
DdeI CTNAG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 306, 320
FaeI CATG 3 cut(s) 47, 114, 143
FaiI YATR 4 cut(s) 45, 112, 141, 248
FatI CATG 3 cut(s) 43, 110, 139
FokI GGATG 5 cut(s) 44, 146, 332, 365, 388
GsuI CTGGAG 1 cut(s) 170
Hin1II CATG 3 cut(s) 47, 114, 143
HinfI GANTC 2 cut(s) 197, 253
HphI GGTGA 2 cut(s) 91, 192
Hpy188I TCNGA 3 cut(s) 241, 311, 319
Hpy188III TCNNGA 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 205, 272
HpyCH4III ACNGT 2 cut(s) 77, 315
HpyCH4V TGCA 3 cut(s) 8, 114, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 3 cut(s) 47, 114, 143
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 2 cut(s) 134, 234
LweI GCATC 3 cut(s) 124, 326, 366
MaeIII GTNAC 2 cut(s) 93, 118
MboII GAAGA 2 cut(s) 99, 299
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 103, 258
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 297, 334
MnlI CCTC 5 cut(s) 84, 124, 268, 315, 364
MseI TTAA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NlaIII CATG 3 cut(s) 47, 114, 143
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PfeI GAWTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 43
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 1 cut(s) 148
SetI ASST 2 cut(s) 95, 283
SfaNI GCATC 3 cut(s) 124, 326, 366
SfcI CTRYAG 2 cut(s) 6, 123
SgeI CNNG 9 cut(s) 56, 100, 123, 152, 161, 233, 267, 284, 307
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 103, 258
SsiI CCGC 1 cut(s) 128
TaaI ACNGT 2 cut(s) 77, 315
TaqI TCGA 2 cut(s) 87, 256
TasI AATT 2 cut(s) 103, 258
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 48, 99
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.