MD11G1053400.v1.1

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016295
Physical Location & Seq
Reverse (-)
4521486 .. 4524506
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1053400.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGGGTTGGGGTGGAAAGACGATGAAAAGCCACATGTTTTGGCTGTCGATGATAGTTTGGTGGACCGCAAAATCATTGAAAAATTGCTCACCAACTCTGCATGCAAAGTGACTACTTCAGAAAACGCACATGGTGCATTGGAGCTGTTGGGGCTTGCTGATGGACAACAAAACTTCGGCAACATTGTTTCGAATGTTAACATGATCATCACTGATTACTCTATGCCGGGAATGACCGGTTATGAGCTTCTGAAAAAAATTAAGGATTCGCCAACCGTGAAGGAGATACCAGTAGTTGTTGTATCATCTGAGGACATACCTACTCGAATCGAGAAGTGCCTTGAGGAAGGAGCCGAAGAGTTCTTTCTGAAGCCTCTCCGGCAATCGGACGTCATAAAATTGCAATGCCGTTTGAAGGAATTCGGAAACCCTAGCGATGAAGGGGAAGATGACCTCTATAAGGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Response_reg

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

4.62

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 13 - 133 2.6e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40540
malus_domestica MD03G1136200.v1.1 MD11G1053400.v1.1
prunus_persica Prupe.6G040900_v2.0.a1 Prupe.6G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073221
rosa_laevigata RLG00000036375
rosa_multiflora Rmu_sc0001887.1_g000013
rosa_roxburghii Rroxscaffold_1G00007970
rosa_rugosa Rorug05G0422400
rosa_samantha Rh5AG479100 Rh5BG499800 Rh5CG523000 Rh5DG511900
rosa_wichuraiana Rw5G044540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 2 cut(s) 102, 389
AcyI GRCGYC 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 385, 415, 460
AflIII ACRYGT 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 2 cut(s) 80, 415
AluBI AGCT 2 cut(s) 145, 247
AluI AGCT 2 cut(s) 145, 247
ApoI RAATTY 1 cut(s) 419
AsiGI ACCGGT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 64
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 393
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 415, 460
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 410
BseLI CCNNNNNNNGG 3 cut(s) 385, 415, 460
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 236
BsiSI CCGG 3 cut(s) 227, 237, 379
BslI CCNNNNNNNGG 3 cut(s) 385, 415, 460
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 103, 156
BstDEI CTNAG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 458
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 134, 151, 379
BstNSI RCATGY 2 cut(s) 38, 105
BstSCI CCNGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 103, 156
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 64
CspAI ACCGGT 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 4 cut(s) 35, 102, 131, 202
CviJI RGCY 7 cut(s) 31, 44, 145, 154, 247, 353, 373
CviKI_1 RGCY 7 cut(s) 31, 44, 145, 154, 247, 353, 373
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 102, 389
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 419
FaeI CATG 4 cut(s) 38, 105, 134, 205
FaiI YATR 9 cut(s) 36, 103, 132, 203, 224, 243, 317, 395, 459
FatI CATG 4 cut(s) 34, 101, 130, 201
FbaI TGATCA 1 cut(s) 204
FspBI CTAG 1 cut(s) 432
HapII CCGG 3 cut(s) 227, 237, 379
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 4 cut(s) 38, 105, 134, 205
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 266, 327
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 3 cut(s) 227, 237, 379
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 64, 199
Hpy188I TCNGA 6 cut(s) 121, 252, 310, 369, 388, 425
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 2 cut(s) 64, 199
HpyAV CCTTC 4 cut(s) 274, 341, 409, 434
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 4 cut(s) 101, 105, 137, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 151, 379
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 4 cut(s) 38, 105, 134, 205
Ksp22I TGATCA 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 142, 350
LpnPI CCDG 4 cut(s) 240, 250, 303, 392
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 368, 458
MluCI AATT 4 cut(s) 83, 258, 398, 419
MnlI CCTC 4 cut(s) 304, 337, 384, 464
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 198, 261, 469
MspI CCGG 3 cut(s) 227, 237, 379
MspR9I CCNGG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 134, 151, 379
NciI CCSGG 1 cut(s) 228
NdeII GATC 1 cut(s) 204
NlaIII CATG 4 cut(s) 38, 105, 134, 205
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 2 cut(s) 38, 105
NspV TTCGAA 1 cut(s) 191
PaeI GCATGC 1 cut(s) 105
PciI ACATGT 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 266, 327
PinAI ACCGGT 1 cut(s) 236
PscI ACATGT 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 64
SaqAI TTAA 3 cut(s) 198, 261, 469
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 228
SetI ASST 5 cut(s) 147, 249, 322, 393, 456
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 1 cut(s) 105
Sse9I AATT 4 cut(s) 83, 258, 398, 419
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 48, 191, 325, 330
TasI AATT 4 cut(s) 83, 258, 398, 419
TfiI GAWTC 2 cut(s) 266, 327
Tru1I TTAA 3 cut(s) 198, 261, 469
Tru9I TTAA 3 cut(s) 198, 261, 469
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 39, 453
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 1 cut(s) 419
XceI RCATGY 2 cut(s) 38, 105
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 432
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.