Prupe.6G120900_v2.0.a1

response regulator

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
8990403 .. 8991301
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G120900.1

Sequence Viewer

Length: 330 bp
ATGGCTGCTGTTTCTGCTTCTCCTCCTTCTTCTTCTGCTGCAGCATCAATGGGGTTGGACAGTGGTGATAAAGTACCTCATGTTTTGGCTGTTGATGATAGTTTTGTGGACCGCAAAATCATTGAAAGGTTACTCACCCACTCCTCTTGCAAAGTAACCACAGCAGAGAACGCACATGGAGCATTGGAACTCTTGGGCCTGGCAGACGGGCAACAAAACTTTAGCAACACCGTTTCAAATGTAAACATGATAATCACGGATTACTGTATGCCAGGAATGACAGGGTATGAGCTTCTAAAAAAAATTAAGGTAATGTTAACTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

11.56

Weight (kDa)

5.16

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016295)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 125, 237
AjnI CCWGG 2 cut(s) 198, 271
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 5, 38, 41
AspS9I GGNCC 2 cut(s) 109, 196
AsuHPI GGTGA 2 cut(s) 77, 127
AvaII GGWCC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 25, 53
BciT130I CCWGG 2 cut(s) 200, 273
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 3 cut(s) 6, 39, 42
BlsI GCNGC 3 cut(s) 7, 40, 43
Bme1390I CCNGG 2 cut(s) 200, 273
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 109, 196
BmrFI CCNGG 2 cut(s) 200, 273
BmsI GCATC 1 cut(s) 53
BseBI CCWGG 2 cut(s) 200, 273
BseRI GAGGAG 2 cut(s) 12, 133
BseXI GCAGC 2 cut(s) 25, 53
BshFI GGCC 1 cut(s) 198
BsnI GGCC 1 cut(s) 198
BspACI CCGC 1 cut(s) 112
BspANI GGCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 200, 273
Bst4CI ACNGT 3 cut(s) 62, 232, 266
BstMWI GCNNNNNNNGC 3 cut(s) 14, 170, 179
BstNI CCWGG 2 cut(s) 200, 273
BstSCI CCNGG 2 cut(s) 198, 271
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 25, 53
BsuRI GGCC 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 109, 196
Csp6I GTAC 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 3 cut(s) 80, 176, 247
CviJI RGCY 4 cut(s) 5, 89, 198, 292
CviKI_1 RGCY 4 cut(s) 5, 89, 198, 292
CviQI GTAC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 198, 271
FaeI CATG 3 cut(s) 83, 179, 250
FaiI YATR 5 cut(s) 81, 177, 248, 269, 288
FatI CATG 3 cut(s) 79, 175, 246
Fnu4HI GCNGC 3 cut(s) 6, 39, 42
Fsp4HI GCNGC 3 cut(s) 6, 39, 42
GluI GCNGC 3 cut(s) 6, 39, 42
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 3 cut(s) 83, 179, 250
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HpaI GTTAAC 1 cut(s) 318
HphI GGTGA 2 cut(s) 77, 127
Hpy166II GTNNAC 3 cut(s) 109, 244, 318
Hpy8I GTNNAC 3 cut(s) 109, 244, 318
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 3 cut(s) 62, 232, 266
HpyCH4V TGCA 2 cut(s) 41, 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 170, 179
Hsp92II CATG 3 cut(s) 83, 179, 250
KspAI GTTAAC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 185, 212, 258, 267, 285
Lsp1109I GCAGC 2 cut(s) 25, 53
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 129, 154
MboII GAAGA 2 cut(s) 21, 24
MluCI AATT 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 3 cut(s) 33, 87, 154
MseI TTAA 2 cut(s) 306, 317
MspR9I CCNGG 2 cut(s) 200, 273
MvaI CCWGG 2 cut(s) 200, 273
MwoI GCNNNNNNNGC 3 cut(s) 14, 170, 179
NlaIII CATG 3 cut(s) 83, 179, 250
PkrI GCNGC 3 cut(s) 7, 40, 43
Psp6I CCWGG 2 cut(s) 198, 271
PspGI CCWGG 2 cut(s) 198, 271
PspPI GGNCC 2 cut(s) 109, 196
PstI CTGCAG 1 cut(s) 43
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 306, 317
SatI GCNGC 3 cut(s) 6, 39, 42
Sau96I GGNCC 2 cut(s) 109, 196
ScrFI CCNGG 2 cut(s) 200, 273
SetI ASST 4 cut(s) 79, 131, 294, 312
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 109
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 198, 271
TaaI ACNGT 3 cut(s) 62, 232, 266
TasI AATT 1 cut(s) 303
Tru1I TTAA 2 cut(s) 306, 317
Tru9I TTAA 2 cut(s) 306, 317
TscAI CASTG 1 cut(s) 67
TseI GCWGC 3 cut(s) 5, 38, 41
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.