Rh5AG479100

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016295
Physical Location & Seq
Forward (+)
82297596 .. 82299060
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG479100.1

Sequence Viewer

Length: 348 bp
ATGTCTGCAGTAAGAATGGGGTTAAATGGGGATGAAAAGCCACATGTTTTGGCTGTTGATGATAGCGTTTTGGACCGTAAAATCATCGAGAGGTTACTCACCAATTCTTCATGCAAAGTGACTACAGCGGAGGATGCACATGGAGCACTGGAGCTGTTGGGTTTGGCAGATGGGCAACAGAACTTCTCTAACACCGTTTCCGACGTTAACATGATAATCACTGATTACTGCATGCCAGGAATGACAGGGTACGAGCTACTAAAAAAAATAAAGGAATCACCAACAGCGAAGGAGATACCAGTAGTTGTTGTATCATCTGAGAACATACAGACTCGAATTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Response_reg

Protein Analysis

115

Amino Acids

12.55

Weight (kDa)

4.94

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 16 - 108 4.9e-15 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40540
malus_domestica MD03G1136200.v1.1 MD11G1053400.v1.1
prunus_persica Prupe.6G040900_v2.0.a1 Prupe.6G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073221
rosa_laevigata RLG00000036375
rosa_multiflora Rmu_sc0001887.1_g000013
rosa_roxburghii Rroxscaffold_1G00007970
rosa_rugosa Rorug05G0422400
rosa_samantha Rh5AG479100 Rh5BG499800 Rh5CG523000 Rh5DG511900
rosa_wichuraiana Rw5G044540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AfaI GTAC 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 154, 256
AluI AGCT 2 cut(s) 154, 256
Alw21I GWGCWC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 91, 270
AvaII GGWCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 237
BfmI CTRYAG 2 cut(s) 6, 123
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 153, 299
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 37, 139
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 153, 299
BsiHKAI GWGCWC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 2 cut(s) 153, 299
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 77, 196
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 37, 139
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 2 cut(s) 47, 235
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 2 cut(s) 6, 123
BtsCI GGATG 2 cut(s) 37, 139
BtsIMutI CAGTG 2 cut(s) 146, 219
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 5 cut(s) 44, 111, 140, 211, 232
CviJI RGCY 4 cut(s) 40, 53, 154, 256
CviKI_1 RGCY 4 cut(s) 40, 53, 154, 256
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 47, 114, 143, 214, 235
FaiI YATR 6 cut(s) 45, 112, 141, 212, 233, 326
FatI CATG 5 cut(s) 43, 110, 139, 210, 231
FokI GGATG 2 cut(s) 44, 146
GsuI CTGGAG 1 cut(s) 170
Hin1II CATG 5 cut(s) 47, 114, 143, 214, 235
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 275, 331
HpaI GTTAAC 1 cut(s) 208
HphI GGTGA 2 cut(s) 91, 270
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 202, 319
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 77, 196
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 8, 114, 137, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 47, 114, 143, 214, 235
KspAI GTTAAC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 143, 151
LpnPI CCDG 5 cut(s) 134, 222, 231, 249, 312
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 93, 118
MboII GAAGA 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 103, 336
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 2 cut(s) 84, 124
MseI TTAA 2 cut(s) 23, 207
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NlaIII CATG 5 cut(s) 47, 114, 143, 214, 235
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 2 cut(s) 47, 235
PaeI GCATGC 1 cut(s) 235
PciI ACATGT 1 cut(s) 43
PfeI GAWTC 1 cut(s) 275
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PscI ACATGT 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 23, 207
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 95, 156, 207, 258
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 2 cut(s) 6, 123
SinI GGWCC 1 cut(s) 73
SphI GCATGC 1 cut(s) 235
Sse9I AATT 2 cut(s) 103, 336
SsiI CCGC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 77, 196
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 87, 334
TasI AATT 2 cut(s) 103, 336
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 23, 207
Tru9I TTAA 2 cut(s) 23, 207
TscAI CASTG 2 cut(s) 153, 226
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 48, 99
TspRI CASTG 2 cut(s) 153, 226
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 2 cut(s) 47, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.