Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016295

Physical Location & Seq

Genomic Coordinates Reverse (-)

3035441 .. 3036544

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTTACTGCCTCTGCTTCTGCTTCTGCTTCTTCTTCAGCAGCACCAATATTAATGGGGTGGGATGGTGATGAAAAGCCACACGTTTTGGCTGTTGATGATAGTTTTGTGGATCGCAGAATCATTGAAAAGTTACTCACCAACTCTGCATGCAAAGTGACCACCGCAGAGAACGCACAGGGAGCATTGGAGCTGTTGGGTCTGGCAGACGGCCAACAAAACTTCGGCAACACCGTTTCAAAGGTAAACCTGATAATCACTGATTACAGTATGCCAGGAATGACAGGGTATGAGCTTCTAAAAAAGATTAAGGAATCACCAACCGGGAAGGAGATCCCAGTAGTTGTCGTATCATCTGAGCACATACCTACTCGAATTGAGAAGTGCCTCGAGGAAGGAGCGAAAGAGTTCTTGCTGAAGCCTCTCCGGCAATCAGACGTTAATCAACTGAGATGTCATTTGATGAAGTTGGGAAACCCTAATGATGAAGGGATGGTTTGCATGGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

171

Amino Acids

18.37

Weight (kDa)

5.41

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016295)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40540
malus_domestica	MD03G1136200.v1.1 MD11G1053400.v1.1
prunus_persica	Prupe.6G040900_v2.0.a1 Prupe.6G120900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073221
rosa_laevigata	RLG00000036375
rosa_multiflora	Rmu_sc0001887.1_g000013
rosa_roxburghii	Rroxscaffold_1G00007970
rosa_rugosa	Rorug05G0422400
rosa_samantha	Rh5AG479100 Rh5BG499800 Rh5CG523000 Rh5DG511900
rosa_wichuraiana	Rw5G044540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	120, 328
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	2 cut(s)	21, 437
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	128, 240
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	193, 295
AluI	AGCT	2 cut(s)	193, 295
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	120, 328
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	41
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	3 cut(s)	80, 130, 309
AvaI	CYCGRG	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	59, 487
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	276, 325
BmeT110I	CYCGRG	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	276, 325
BmrI	ACTGGG	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	70, 498
BseMII	CTCAG	2 cut(s)	348, 440
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	324, 427
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	112, 333
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	349, 441
BspPI	GGATC	2 cut(s)	120, 328
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	112, 333
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	235, 269
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	357, 449
BstF5I	GGATG	2 cut(s)	70, 498
BstKTI	GATC	2 cut(s)	115, 336
BstMBI	GATC	2 cut(s)	112, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 427
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	274, 323
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	70, 498
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	2 cut(s)	150, 502
CviJI	RGCY	6 cut(s)	79, 92, 193, 213, 295, 421
CviKI_1	RGCY	6 cut(s)	79, 92, 193, 213, 295, 421
DdeI	CTNAG	2 cut(s)	357, 449
DpnI	GATC	2 cut(s)	114, 335
DpnII	GATC	2 cut(s)	112, 333
EaeI	YGGCCR	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	21, 437
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	153, 505
FaiI	YATR	5 cut(s)	151, 272, 291, 365, 503
FatI	CATG	2 cut(s)	149, 501
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	77, 505
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	324, 427
Hin1II	CATG	2 cut(s)	153, 505
HinfI	GANTC	2 cut(s)	120, 314
HpaII	CCGG	2 cut(s)	324, 427
HphI	GGTGA	3 cut(s)	80, 130, 309
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	358, 436
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	322, 389, 482
HpyCH4III	ACNGT	2 cut(s)	235, 269
HpyCH4IV	ACGT	2 cut(s)	84, 438
HpyCH4V	TGCA	3 cut(s)	149, 153, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 427
HpyF3I	CTNAG	2 cut(s)	357, 449
HpySE526I	ACGT	2 cut(s)	84, 438
Hsp92II	CATG	2 cut(s)	153, 505
Kzo9I	GATC	2 cut(s)	112, 333
LmnI	GCTCC	3 cut(s)	182, 190, 398
LpnPI	CCDG	9 cut(s)	164, 188, 261, 263, 270, 288, 337, 351, 440
Lsp1109I	GCAGC	1 cut(s)	53
MaeII	ACGT	2 cut(s)	84, 438
MaeIII	GTNAC	3 cut(s)	4, 132, 157
MalI	GATC	2 cut(s)	114, 335
MboI	GATC	2 cut(s)	112, 333
MboII	GAAGA	2 cut(s)	24, 27
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	1 cut(s)	375
MnlI	CCTC	4 cut(s)	22, 385, 398, 432
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	3 cut(s)	53, 309, 441
MspI	CCGG	2 cut(s)	324, 427
MspR9I	CCNGG	2 cut(s)	276, 325
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 427
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	2 cut(s)	112, 333
NlaIII	CATG	2 cut(s)	153, 505
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	120, 314
PkrI	GCNGC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	53, 309, 441
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	112, 333
ScrFI	CCNGG	2 cut(s)	276, 325
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	7 cut(s)	87, 195, 246, 252, 297, 370, 441
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	274, 323
TaaI	ACNGT	2 cut(s)	235, 269
TaiI	ACGT	2 cut(s)	87, 441
TaqI	TCGA	2 cut(s)	373, 390
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	120, 314
Tru1I	TTAA	3 cut(s)	53, 309, 441
Tru9I	TTAA	3 cut(s)	53, 309, 441
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	87, 479, 501
TspRI	CASTG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	53
XceI	RCATGY	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.