Rmu_sc0001887.1_g000013

response regulator

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001887.1
Physical Location & Seq
Forward (+)
59796 .. 60995
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001887.1_g000013.1.cds

Sequence Viewer

Length: 267 bp
atgccagtgactacagcggaggatgcacatggagcactggagctgttgggtttggcagatgggcaacagaacttctctaacaccgtttccgacgttaacatgataatcactgattactgcatgccaggaatgacagggtgccttgaggaaggtgctgaagagttcttactgaagcctctccgacagtcggatgttaaaagattgagatgccatctaacaaaggatggaaaccctactgatgaggggatgctctgtgtgggaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

9.57

Weight (kDa)

4.52

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016295)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AciI CCGC 1 cut(s) 17
AcuI CTGAAG 2 cut(s) 177, 191
AfiI CCNNNNNNNGG 1 cut(s) 187
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 3 cut(s) 53, 218, 219
BciT130I CCWGG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 3 cut(s) 13, 197, 237
BpmI CTGGAG 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 5, 42
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 4 cut(s) 28, 196, 229, 252
BseLI CCNNNNNNNGG 1 cut(s) 187
BseNI ACTGG 2 cut(s) 5, 42
BshNI GGYRCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 37
BspACI CCGC 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 138
BsrI ACTGG 2 cut(s) 5, 42
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 85, 186
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 4 cut(s) 28, 196, 229, 252
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 12
BtsCI GGATG 4 cut(s) 28, 196, 229, 252
BtsIMutI CAGTG 3 cut(s) 12, 35, 108
Cac8I GCNNGC 1 cut(s) 122
CviAII CATG 3 cut(s) 29, 100, 121
CviJI RGCY 2 cut(s) 43, 175
CviKI_1 RGCY 2 cut(s) 43, 175
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 177, 191
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 32, 103, 124
FaiI YATR 3 cut(s) 30, 101, 122
FatI CATG 3 cut(s) 28, 99, 120
FokI GGATG 4 cut(s) 35, 203, 236, 259
GsuI CTGGAG 1 cut(s) 59
Hin1II CATG 3 cut(s) 32, 103, 124
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaI GTTAAC 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 91, 182, 190
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 85, 186
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 26, 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 32, 103, 124
KspAI GTTAAC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 32, 40
LpnPI CCDG 5 cut(s) 18, 23, 111, 120, 138
LweI GCATC 3 cut(s) 13, 197, 237
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 7
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 37
MmeI TCCRAC 3 cut(s) 114, 168, 205
MnlI CCTC 4 cut(s) 13, 139, 186, 235
MseI TTAA 2 cut(s) 96, 195
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NlaIII CATG 3 cut(s) 32, 103, 124
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 96, 195
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 45, 96, 154
SfaNI GCATC 3 cut(s) 13, 197, 237
SfcI CTRYAG 1 cut(s) 12
SgeI CNNG 9 cut(s) 17, 41, 50, 112, 133, 137, 138, 147, 155
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 124
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 85, 186
TaiI ACGT 1 cut(s) 96
Tru1I TTAA 2 cut(s) 96, 195
Tru9I TTAA 2 cut(s) 96, 195
TscAI CASTG 3 cut(s) 12, 42, 115
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspRI CASTG 3 cut(s) 12, 42, 115
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.