Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004084

Physical Location & Seq

Genomic Coordinates Reverse (-)

15598780 .. 15599322

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1144600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTTGACGTCGTCACCGCCTTTGAATCGAAGCTGCATCAGTCAGGCGACAGATTCCAATCGAAGATCTCGGTGCCCAAACAGGTGCTGGTTGACCATTACCCAGAACGCGAAGAAGCAACTAATTTGTTAGTGGGGTTGGAGTTTCCGGTGATTGCAAAGCCGTTGTTTGCGAATGGCAGCGCCAAGTCGCACGAGATGTGTTTGATTTTTAGCCCTAAGGGGTTGCGCAGTCTTCTGGCCGATACTGATAGTCCTATTTTGCTGCAACAGTTTGTGAACCACGGCGGGGTGGTGTTCAAGGGTTACTCAATCGGAGAGCACGACCAGTGCGTCAAGCGGAGGTCACTGCCGGACATTTCGAAGGAGCAGGTGACCACATTGGAAGGGGCAGTGCTTCCTTTTTCACAGATATCAAATTCTGCGAATGACGAGCATAATCTGGCTCATGATCCTCACGAAATGCCTCCGCTGGAGTTTGTTGAGGAGGTGGCGAAGGGGGTGTGGGCCTCAAACTCCACTTTTGTTTTTTTTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

181

Amino Acids

19.99

Weight (kDa)

5.42

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin	PF05770	21 - 167	2.7e-39	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16760
fragaria_vesca	FvH4_5g22490 FvH4_7g34131
malus_domestica	MD01G1237400.v1.1 MD03G1144600.v1.1 MD06G1037200.v1.1 MD07G1309900.v1.1 MD16G1271300.v1.1
prunus_persica	Prupe.2G327800_v2.0.a1 Prupe.5G031800_v2.0.a1
pyrus_communis	pycom06g03060 pycom07g28190 pycom16g24080
rosa_chinensis	RchiOBHm_Chr1g0384451 RchiOBHm_Chr7g0210271
rosa_laevigata	RLG00000003053 RLG00000026039
rosa_multiflora	Rmu_co8221066.1_g000001 Rmu_sc0017046.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248470 Rroxscaffold_4G00276690
rosa_rugosa	Rorug01G0447800 Rorug07G0120400
rosa_samantha	Rh1AG473100 Rh1BG431100 Rh1CG444200 Rh1DG463600 Rh7AG253200 Rh7BG248200 Rh7CG270100 Rh7DG260700
rosa_wichuraiana	Rw1G039950 Rw7G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
AasI	GACNNNNNNGTC	1 cut(s)	332
AatII	GACGTC	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	18, 288, 340, 470
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	26, 301, 536
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	240, 507
ApeKI	GCWGC	3 cut(s)	34, 180, 265
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	185, 231
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	7, 163, 385
AsuII	TTCGAA	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	21, 192, 252
BceAI	ACGGC	2 cut(s)	148, 301
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	3 cut(s)	35, 181, 266
BlsI	GCNGC	3 cut(s)	36, 182, 267
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	328
Bse21I	CCTNAGG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	21, 192, 252
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	242, 509
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	149, 353
BslI	CCNNNNNNNGG	1 cut(s)	289
BsnI	GGCC	2 cut(s)	242, 509
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	78, 324
Bsp143I	GATC	2 cut(s)	66, 451
BspACI	CCGC	4 cut(s)	18, 288, 340, 470
BspANI	GGCC	2 cut(s)	242, 509
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	66, 451
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	185, 231
BstKTI	GATC	2 cut(s)	69, 454
BstMBI	GATC	2 cut(s)	66, 451
BstPI	GGTNACC	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	21, 192, 252
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	242, 509
BtgI	CCRYGG	1 cut(s)	283
BtsI	GCAGTG	2 cut(s)	347, 399
BtsIMutI	CAGTG	3 cut(s)	335, 347, 399
BveI	ACCTGC	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	88
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	185, 231
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	1 cut(s)	322
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	6 cut(s)	34, 163, 216, 242, 446, 509
CviKI_1	RGCY	6 cut(s)	34, 163, 216, 242, 446, 509
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	68, 453
DpnII	GATC	2 cut(s)	66, 451
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	414
Eco81I	CCTNAGG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	373
EcoO65I	GGTNACC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	414
FaeI	CATG	1 cut(s)	452
FaiI	YATR	2 cut(s)	438, 450
FatI	CATG	1 cut(s)	448
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	35, 181, 266
Fsp4HI	GCNGC	3 cut(s)	35, 181, 266
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	2 cut(s)	184, 230
GluI	GCNGC	3 cut(s)	35, 181, 266
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	242, 509
HapII	CCGG	2 cut(s)	149, 353
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	2 cut(s)	185, 231
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	2 cut(s)	183, 229
HinP1I	GCGC	2 cut(s)	183, 229
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	26, 54
HpaII	CCGG	2 cut(s)	149, 353
HphI	GGTGA	3 cut(s)	7, 163, 385
Hpy166II	GTNNAC	2 cut(s)	94, 280
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	449, 458
Hpy8I	GTNNAC	2 cut(s)	94, 280
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	358, 380, 490
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	37, 158, 268
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	2 cut(s)	183, 229
Kzo9I	GATC	2 cut(s)	66, 451
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	3 cut(s)	21, 192, 252
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	13, 305, 345, 373
MalI	GATC	2 cut(s)	68, 453
MboI	GATC	2 cut(s)	66, 451
MboII	GAAGA	3 cut(s)	76, 125, 227
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	78, 324
MluCI	AATT	2 cut(s)	124, 418
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	6 cut(s)	336, 465, 477, 478, 481, 520
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	2 cut(s)	149, 353
MvnI	CGCG	1 cut(s)	111
NdeII	GATC	2 cut(s)	66, 451
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	3 cut(s)	13, 345, 373
NsbI	TGCGCA	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	362
PagI	TCATGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 330
PfeI	GAWTC	2 cut(s)	26, 54
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	36, 182, 267
PspEI	GGTNACC	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	11
SatI	GCNGC	3 cut(s)	35, 181, 266
Sau3AI	GATC	2 cut(s)	66, 451
Sau96I	GGNCC	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	78, 324
SetI	ASST	6 cut(s)	12, 36, 87, 347, 375, 492
SfaNI	GCATC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	362
Sse9I	AATT	2 cut(s)	124, 418
SsiI	CCGC	4 cut(s)	18, 288, 340, 470
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	29, 62, 362
TasI	AATT	2 cut(s)	124, 418
TfiI	GAWTC	2 cut(s)	26, 54
TscAI	CASTG	3 cut(s)	335, 354, 399
TseFI	GTSAC	3 cut(s)	13, 345, 373
TseI	GCWGC	3 cut(s)	34, 180, 265
Tsp45I	GTSAC	3 cut(s)	13, 345, 373
TspRI	CASTG	3 cut(s)	335, 354, 399
Tth111I	GACNNNGTC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.