Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8221066.1

Orthogroup ID

OG0004084

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 740

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8221066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 739 bp

gtcgatgccgccaaggccttgacccagcagggccccttcgactgcatcatccacaagctgtacgacgacgactggaatcagcaattgaaggagtactcgtctctctatccccgcaccgtcatcctcgatccgcccgagtccatcgcccgcctccacaaccgggtctcaatgctcgacgtcatcaacgccgccttcaaagccccgcgagtcgagaatgttggggtccccaagcaggtcctgatccacgacgcggccgaactggaatccgatctgggattgaaatttccggtgattgcaaagcctgtgctggccaatggcagcgccaagtcgcaccaaatgtctatggttttcagcggcgaggggttgaagaaggtcgagacccccattttgctgcaggagtttgtcaaccacgggggtaccatcttcaaggtctatgtcatcggggattacaccgagtgcgtcaagcgtaggtcgctgcccgacatctccgacgagcagcgcaccaaattggccggggttgtggtccctttctcccagatttccaatgaagaagttaacattgagggtgttgagatgccgccacctgggtttgtggaggagctcgccaaggggatttgcgacggcctcaaactcaatttcttcaacttcgatgtcatcagggattccaatgacaagcatagctattatgttattgacatcaattactttcctggctatgccaaactccacaacttcgagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

5.3

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16760
fragaria_vesca	FvH4_5g22490 FvH4_7g34131
malus_domestica	MD01G1237400.v1.1 MD03G1144600.v1.1 MD06G1037200.v1.1 MD07G1309900.v1.1 MD16G1271300.v1.1
prunus_persica	Prupe.2G327800_v2.0.a1 Prupe.5G031800_v2.0.a1
pyrus_communis	pycom06g03060 pycom07g28190 pycom16g24080
rosa_chinensis	RchiOBHm_Chr1g0384451 RchiOBHm_Chr7g0210271
rosa_laevigata	RLG00000003053 RLG00000026039
rosa_multiflora	Rmu_co8221066.1_g000001 Rmu_sc0017046.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248470 Rroxscaffold_4G00276690
rosa_rugosa	Rorug01G0447800 Rorug07G0120400
rosa_samantha	Rh1AG473100 Rh1BG431100 Rh1CG444200 Rh1DG463600 Rh7AG253200 Rh7BG248200 Rh7CG270100 Rh7DG260700
rosa_wichuraiana	Rw1G039950 Rw7G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	416
AccII	CGCG	2 cut(s)	205, 251
AciI	CCGC	9 cut(s)	9, 112, 131, 148, 189, 203, 251, 354, 578
AclWI	GGATC	2 cut(s)	122, 235
AcoI	YGGCCR	3 cut(s)	252, 309, 510
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	62, 95, 418
AfiI	CCNNNNNNNGG	4 cut(s)	160, 232, 250, 584
AgsI	TTSAA	6 cut(s)	88, 196, 280, 367, 427, 643
AjnI	CCWGG	2 cut(s)	583, 709
AluBI	AGCT	3 cut(s)	58, 601, 681
AluI	AGCT	3 cut(s)	58, 601, 681
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	105, 169, 371
AlwI	GGATC	2 cut(s)	122, 235
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	6 cut(s)	15, 31, 252, 309, 510, 622
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	4 cut(s)	318, 391, 475, 496
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
Asp718I	GGTACC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	323, 501
AspS9I	GGNCC	5 cut(s)	31, 32, 223, 235, 523
AsuC2I	CCSGG	2 cut(s)	161, 514
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	3 cut(s)	223, 235, 523
BaeGI	GKGCMC	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	35, 603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	330, 378, 462, 508
BccI	CCATC	2 cut(s)	149, 428
BceAI	ACGGC	1 cut(s)	637
BciT130I	CCWGG	2 cut(s)	585, 711
BcnI	CCSGG	2 cut(s)	161, 514
BcoDI	GTCTC	3 cut(s)	105, 169, 371
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	9 cut(s)	9, 189, 252, 319, 355, 392, 476, 497, 578
BlsI	GCNGC	9 cut(s)	10, 190, 253, 320, 356, 393, 477, 498, 579
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	4 cut(s)	161, 514, 585, 711
Bme18I	GGWCC	3 cut(s)	223, 235, 523
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	5 cut(s)	31, 32, 223, 235, 523
BmiI	GGNNCC	6 cut(s)	33, 34, 224, 225, 418, 525
BmrFI	CCNGG	4 cut(s)	161, 514, 585, 711
BmsI	GCATC	2 cut(s)	54, 564
BpuMI	CCSGG	2 cut(s)	161, 514
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	169, 371
BsaJI	CCNNGG	5 cut(s)	12, 409, 513, 584, 606
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 232, 250, 584
Bse1I	ACTGG	2 cut(s)	77, 264
BseBI	CCWGG	2 cut(s)	585, 711
BseDI	CCNNGG	5 cut(s)	12, 409, 513, 584, 606
BseGI	GGATG	2 cut(s)	48, 120
BseLI	CCNNNNNNNGG	4 cut(s)	160, 232, 250, 584
BseNI	ACTGG	2 cut(s)	77, 264
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	330, 378, 462, 508
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	205, 251
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	6 cut(s)	17, 33, 254, 311, 512, 624
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	160, 287, 513
BslFI	GGGAC	2 cut(s)	209, 509
BslI	CCNNNNNNNGG	4 cut(s)	160, 232, 250, 584
BsmAI	GTCTC	3 cut(s)	105, 169, 371
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	209, 509
BsnI	GGCC	6 cut(s)	17, 33, 254, 311, 512, 624
Bso31I	GGTCTC	2 cut(s)	169, 371
BsoBI	CYCGRG	1 cut(s)	134
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	35, 603
Bsp143I	GATC	3 cut(s)	127, 240, 268
BspACI	CCGC	9 cut(s)	9, 112, 131, 148, 189, 203, 251, 354, 578
BspANI	GGCC	6 cut(s)	17, 33, 254, 311, 512, 624
BspFNI	CGCG	2 cut(s)	205, 251
BspLI	GGNNCC	6 cut(s)	33, 34, 224, 225, 418, 525
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	122, 235
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	169, 371
BsrI	ACTGG	2 cut(s)	77, 264
BssECI	CCNNGG	5 cut(s)	12, 409, 513, 584, 606
BssMI	GATC	3 cut(s)	127, 240, 268
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	12, 606
Bst2UI	CCWGG	2 cut(s)	585, 711
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	148, 309, 603
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	48, 120
BstFNI	CGCG	2 cut(s)	205, 251
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	323, 501
BstKTI	GATC	3 cut(s)	130, 243, 271
BstMAI	GTCTC	3 cut(s)	105, 169, 371
BstMBI	GATC	3 cut(s)	127, 240, 268
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 197, 472
BstNI	CCWGG	2 cut(s)	585, 711
BstSCI	CCNGG	4 cut(s)	159, 512, 583, 709
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	2 cut(s)	205, 251
BstV1I	GCAGC	4 cut(s)	330, 378, 462, 508
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	6 cut(s)	17, 33, 254, 311, 512, 624
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	48, 120
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	148, 309, 603
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	323, 501
Cfr13I	GGNCC	5 cut(s)	31, 32, 223, 235, 523
CseI	GACGC	2 cut(s)	257, 448
Csp6I	GTAC	3 cut(s)	61, 94, 417
CviQI	GTAC	3 cut(s)	61, 94, 417
DpnI	GATC	3 cut(s)	129, 242, 270
DpnII	GATC	3 cut(s)	127, 240, 268
DraIII	CACNNNGTG	1 cut(s)	456
EaeI	YGGCCR	3 cut(s)	252, 309, 510
EagI	CGGCCG	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	601
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	12, 606
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	2 cut(s)	35, 603
Eco31I	GGTCTC	2 cut(s)	169, 371
Eco47I	GGWCC	3 cut(s)	223, 235, 523
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	601
EcoO109I	RGGNCCY	4 cut(s)	31, 32, 223, 235
EcoRII	CCWGG	2 cut(s)	583, 709
EcoT14I	CCWWGG	2 cut(s)	12, 606
EcoT38I	GRGCYC	2 cut(s)	35, 603
ErhI	CCWWGG	2 cut(s)	12, 606
Esp3I	CGTCTC	1 cut(s)	105
FaiI	YATR	5 cut(s)	344, 435, 678, 687, 717
FaqI	GGGAC	2 cut(s)	209, 509
FauI	CCCGC	3 cut(s)	119, 155, 210
Fnu4HI	GCNGC	9 cut(s)	9, 189, 252, 319, 355, 392, 476, 497, 578
FokI	GGATG	2 cut(s)	35, 107
FriOI	GRGCYC	2 cut(s)	35, 603
Fsp4HI	GCNGC	9 cut(s)	9, 189, 252, 319, 355, 392, 476, 497, 578
GlaI	GCGC	2 cut(s)	322, 500
GluI	GCNGC	9 cut(s)	9, 189, 252, 319, 355, 392, 476, 497, 578
GsaI	CCCAGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	6 cut(s)	17, 33, 254, 311, 512, 624
HapII	CCGG	3 cut(s)	160, 287, 513
HgaI	GACGC	2 cut(s)	257, 448
HhaI	GCGC	2 cut(s)	323, 501
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	2 cut(s)	321, 499
HinP1I	GCGC	2 cut(s)	321, 499
HincII	GTYRAC	2 cut(s)	406, 556
HindII	GTYRAC	2 cut(s)	406, 556
HinfI	GANTC	5 cut(s)	76, 137, 207, 263, 662
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	3 cut(s)	160, 287, 513
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	406, 556
Hpy188I	TCNGA	2 cut(s)	268, 490
Hpy188III	TCNNGA	3 cut(s)	211, 238, 376
Hpy8I	GTNNAC	2 cut(s)	406, 556
Hpy99I	CGWCG	6 cut(s)	68, 71, 179, 251, 494, 623
HpyAV	CCTTC	4 cut(s)	46, 82, 202, 364
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	45, 296, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 197, 472
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	2 cut(s)	321, 499
KflI	GGGWCCC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	127, 240, 268
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	4 cut(s)	330, 378, 462, 508
LweI	GCATC	2 cut(s)	54, 564
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	129, 242, 270
MboI	GATC	3 cut(s)	127, 240, 268
MboII	GAAGA	4 cut(s)	379, 415, 560, 631
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	35, 603
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	5 cut(s)	83, 281, 506, 634, 700
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	146, 216
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	6 cut(s)	134, 161, 352, 556, 589, 635
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	3 cut(s)	160, 287, 513
MspR9I	CCNGG	4 cut(s)	161, 514, 585, 711
MunI	CAATTG	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	585, 711
MvnI	CGCG	2 cut(s)	205, 251
MwoI	GCNNNNNNNGC	3 cut(s)	14, 197, 472
NciI	CCSGG	2 cut(s)	161, 514
NdeII	GATC	3 cut(s)	127, 240, 268
NlaIV	GGNNCC	6 cut(s)	33, 34, 224, 225, 418, 525
PceI	AGGCCT	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 252
PfeI	GAWTC	3 cut(s)	76, 263, 662
PkrI	GCNGC	9 cut(s)	10, 190, 253, 320, 356, 393, 477, 498, 579
PleI	GAGTC	2 cut(s)	145, 215
PpsI	GAGTC	2 cut(s)	145, 215
PpuMI	RGGWCCY	2 cut(s)	223, 235
Psp124BI	GAGCTC	1 cut(s)	603
Psp5II	RGGWCCY	2 cut(s)	223, 235
Psp6I	CCWGG	2 cut(s)	583, 709
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	583, 709
PspN4I	GGNNCC	6 cut(s)	33, 34, 224, 225, 418, 525
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	5 cut(s)	31, 32, 223, 235, 523
PspPPI	RGGWCCY	2 cut(s)	223, 235
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	62, 95, 418
RsaNI	GTAC	3 cut(s)	61, 94, 417
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	9 cut(s)	9, 189, 252, 319, 355, 392, 476, 497, 578
Sau3AI	GATC	3 cut(s)	127, 240, 268
Sau96I	GGNCC	5 cut(s)	31, 32, 223, 235, 523
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	146, 216
ScrFI	CCNGG	4 cut(s)	161, 514, 585, 711
SduI	GDGCHC	2 cut(s)	35, 603
SetI	ASST	9 cut(s)	60, 180, 237, 375, 432, 473, 586, 603, 683
SfaNI	GCATC	2 cut(s)	54, 564
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	3 cut(s)	223, 235, 523
Sse9I	AATT	5 cut(s)	83, 281, 506, 634, 700
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	9 cut(s)	9, 112, 131, 148, 189, 203, 251, 354, 578
SstI	GAGCTC	1 cut(s)	603
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	4 cut(s)	159, 512, 583, 709
StyI	CCWWGG	2 cut(s)	12, 606
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	8 cut(s)	3, 39, 126, 174, 210, 375, 648, 735
TasI	AATT	5 cut(s)	83, 281, 506, 634, 700
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	5 cut(s)	11, 191, 254, 357, 580
TfiI	GAWTC	3 cut(s)	76, 263, 662
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	4 cut(s)	318, 391, 475, 496
TspDTI	ATGAA	1 cut(s)	561
VpaK11BI	GGWCC	3 cut(s)	223, 235, 523
XapI	RAATTY	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.