MD03G1156200.v1.1

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011046
Physical Location & Seq
Forward (+)
18339037 .. 18341502
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1156200.v1.1.491

Sequence Viewer

Length: 1683 bp
ATGGGTTCTCTCAGCAAAAGCGTAACCAGCTCGCCATCTTCTGATTTCATGAAGAACAATATGGAGCAAGAAGTGGTCACTGAGAAGCGAGGGATCGTAGCCATTCTCAGCCCGTCCGACTCCGAAAGAACCAAAGCCGCTTCCTTGCGACGAACACTGTCCGCGGACATGTCGTCCAAAAGATGGCTGGCTCAACACGGTTTCTCTCCCATGAAGAAGATTGCGTCATCCGAAGAACTCTGTGCCTCCGTAGACATTCGGGACGACTCATCTTCATCGTCCGAAGATGTAGGTCATTACCAAGATCAAAGGAAGGCCAAATTCCATATTTGGAGCTCAATTGATGAGCAAGCTCAGAAGCAAAAAACCAAAACCGAGGCTGCAAAGCAGCAGCCGGGACAAGCCGATCTTTGGAGCTCGATTGTATGTCAAAAGGCCAACGAAGAAGAGGCGAGCAAAGCGGCACCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGCTCTTTGACTAAAAAGAGTCTTGAAGTCTGCACTGAAAGTCTCGGATCCGAGACTGGCTCTGAAGGGTTTGCTTCATACCCTACTTCGGAGACCGGTGACGTAGAAATAGTGGAGAAAGAGACGGAAGTAGAGCAAGCCGCAGTTCAACAACAGCAAGAAGAAAAAGAGAAGCCTCAGCTGTCACAAGCATTTGATGGGAATGAATTTCGGGTTGTCAAGTACAACTCTGCTGCTAGTAAGAAATTGCCTTCCGTTCGATCTTTCCCTCCACCTCTTCCGTCTTTATCAGGATGTGACGGGGAATCTGTTTGCATGAGGACTCGTCGCGACAATGGGCGACTAGTCCTTGAAGCGGTGTCTATGCCTTCCCTGAACAACTTCCGTGCTCAACGCCAAGATGGTCGCCTTGTCCTCACATTTCTCAATTCTACTTCGAGCTCTTGCGAGGTGCCTAAGTTTGAAGAGGTTGCTAATGAAGAAGAGAAAATTAGAGAGGAAGAATTTGAGGAAAATGTGAACTTTGAGGAAGGAGAGAAGGAAAAAGAAAGCGAAAAAAGTGATGGTGATGGTGATGATGTTGATGAGGATGAGGAGGAAGAAAGTGATGAGTTTGAGAAAGCCAGAAAAGAAAATGGAATCAGAAGAATAGAAATTGTGATGGAGGAAGCACCAAGAGTACTAACAAGTAGAGTGACAAATGTTCACAGGTTAGCACTAATGATGAATAAGCCAATTGGGTTAGACAATAAGGCTCATGGGTGGACTAACAAGTTCAATGAAGTAGTGAAATATGGAGGGGTTCAAGAGGAGGTCGAAGTGGTTGAGACAACCACAATTTCAAGGTCACTCCCTCCACTGCCTGGTCGTGTCGCTCGAATGATACCTAAGCCACCGGCCACCACAAAAACAGCAGCAGCAGCAGCCTCTTTCAACGCTTACGAGTACCATTGGCGCACCAATCCCACAACAACTGCCGCTCTTAAACCTCTTCCGCCGCCAACGTCGCAGTCCCTCAAAAGTAATGGCTTTATGTCCCAGAATCAGTTGGCAAATGAGCAGCAACAATTGCTGGTTTTGAGAGGGAACAAAGGGGATCAATTGGTTACTTTTTCAAAGGGTTGCAAAGAGCCTAGAATAAGATCTCTTCTATTTTGGGAGCCTTATTGCATTGCCACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

561

Amino Acids

62.29

Weight (kDa)

5.26

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 254 - 307 7.4e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 463, 949
AccB7I CCANNNNNTGG 2 cut(s) 183, 1361
AccBSI CCGCTC 1 cut(s) 1478
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 164, 828
AciI CCGC 9 cut(s) 138, 162, 164, 461, 639, 854, 1476, 1493, 1496
AclWI GGATC 4 cut(s) 101, 540, 553, 1602
AcoI YGGCCR 1 cut(s) 1395
AcsI RAATTY 3 cut(s) 320, 704, 1001
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 3 cut(s) 722, 1179, 1445
AfiI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1361
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 593
AgsI TTSAA 9 cut(s) 524, 647, 851, 962, 1276, 1304, 1341, 1432, 1614
AhdI GACNNNNNGTC 1 cut(s) 172
AhlI ACTAGT 1 cut(s) 841
AjnI CCWGG 1 cut(s) 1360
AluBI AGCT 7 cut(s) 30, 336, 353, 417, 501, 679, 939
AluI AGCT 7 cut(s) 30, 336, 353, 417, 501, 679, 939
Alw21I GWGCWC 5 cut(s) 338, 419, 503, 889, 941
Alw26I GTCTC 5 cut(s) 545, 545, 584, 614, 1319
AlwI GGATC 4 cut(s) 101, 540, 553, 1602
AoxI GGCC 3 cut(s) 315, 435, 1395
ApeKI GCWGC 9 cut(s) 380, 388, 391, 731, 1412, 1415, 1418, 1421, 1558
ApoI RAATTY 3 cut(s) 320, 704, 1001
AsiGI ACCGGT 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 878
AspLEI GCGC 1 cut(s) 1455
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 3 cut(s) 608, 1076, 1082
BamHI GGATCC 1 cut(s) 545
BanI GGYRCC 2 cut(s) 463, 949
BanII GRGCYC 4 cut(s) 338, 419, 503, 941
Bbv12I GWGCWC 5 cut(s) 338, 419, 503, 889, 941
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 9 cut(s) 367, 400, 403, 718, 1424, 1427, 1430, 1433, 1570
BccI CCATC 7 cut(s) 43, 177, 689, 893, 1055, 1061, 1153
BciT130I CCWGG 1 cut(s) 1362
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 5 cut(s) 545, 545, 584, 614, 1319
BcuI ACTAGT 1 cut(s) 841
BfaI CTAG 3 cut(s) 735, 842, 1632
BglII AGATCT 1 cut(s) 1640
BmcAI AGTACT 1 cut(s) 1179
Bme1390I CCNGG 2 cut(s) 396, 1362
BmeRI GACNNNNNGTC 1 cut(s) 172
BmiI GGNNCC 4 cut(s) 465, 547, 951, 1659
BmrFI CCNGG 2 cut(s) 396, 1362
BplI GAGNNNNNCTC 2 cut(s) 542, 574
Bpu10I CCTNAGC 2 cut(s) 675, 1386
BpuMI CCSGG 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 162, 375
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1361
Bse118I RCCGGY 2 cut(s) 593, 1393
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 1668
BseBI CCWGG 1 cut(s) 1362
BseDI CCNNGG 2 cut(s) 162, 375
BseGI GGATG 4 cut(s) 227, 475, 797, 1093
BseLI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1361
BseMI GCAATG 1 cut(s) 1668
BseMII CTCAG 5 cut(s) 25, 72, 121, 368, 689
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 2 cut(s) 1106, 1322
BseXI GCAGC 9 cut(s) 367, 400, 403, 718, 1424, 1427, 1430, 1433, 1570
BsgI GTGCAG 1 cut(s) 514
Bsh1236I CGCG 2 cut(s) 164, 828
BshFI GGCC 3 cut(s) 317, 437, 1397
BshNI GGYRCC 2 cut(s) 463, 949
BshTI ACCGGT 1 cut(s) 593
BsiHKAI GWGCWC 5 cut(s) 338, 419, 503, 889, 941
BsiSI CCGG 3 cut(s) 395, 594, 1394
BslFI GGGAC 4 cut(s) 275, 411, 1495, 1519
BslI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1361
BsmAI GTCTC 5 cut(s) 545, 545, 584, 614, 1319
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 4 cut(s) 275, 411, 1495, 1519
BsnI GGCC 3 cut(s) 317, 437, 1397
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 5 cut(s) 338, 419, 503, 889, 941
Bsp143I GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
Bsp68I TCGCGA 1 cut(s) 828
BspACI CCGC 9 cut(s) 138, 162, 164, 461, 639, 854, 1476, 1493, 1496
BspANI GGCC 3 cut(s) 317, 437, 1397
BspCNI CTCAG 5 cut(s) 24, 73, 120, 367, 688
BspFNI CGCG 2 cut(s) 164, 828
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 465, 547, 951, 1659
BspPI GGATC 4 cut(s) 101, 540, 553, 1602
BspT107I GGYRCC 2 cut(s) 463, 949
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 1478
BsrDI GCAATG 1 cut(s) 1668
BsrFI RCCGGY 2 cut(s) 593, 1393
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 2 cut(s) 593, 1393
BssECI CCNNGG 2 cut(s) 162, 375
BssMI GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
Bst2UI CCWGG 1 cut(s) 1362
Bst4CI ACNGT 2 cut(s) 159, 200
Bst6I CTCTTC 6 cut(s) 441, 780, 957, 975, 1494, 1650
BstAPI GCANNNNNTGC 1 cut(s) 1567
BstC8I GCNNGC 5 cut(s) 32, 189, 351, 454, 636
BstDEI CTNAG 7 cut(s) 11, 81, 107, 354, 675, 954, 1386
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 227, 475, 797, 1093
BstFNI CGCG 2 cut(s) 164, 828
BstHHI GCGC 1 cut(s) 1455
BstKTI GATC 7 cut(s) 96, 307, 409, 548, 761, 1597, 1643
BstMAI GTCTC 5 cut(s) 545, 545, 584, 614, 1319
BstMBI GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
BstMWI GCNNNNNNNGC 6 cut(s) 27, 458, 1418, 1421, 1504, 1567
BstNI CCWGG 1 cut(s) 1362
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 394, 1360
BstUI CGCG 2 cut(s) 164, 828
BstV1I GCAGC 9 cut(s) 367, 400, 403, 718, 1424, 1427, 1430, 1433, 1570
BstX2I RGATCY 2 cut(s) 545, 1640
BstYI RGATCY 2 cut(s) 545, 1640
BsuRI GGCC 3 cut(s) 317, 437, 1397
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 227, 475, 797, 1093
BtsI GCAGTG 1 cut(s) 1355
BtsIMutI CAGTG 4 cut(s) 78, 155, 531, 1355
BtuMI TCGCGA 1 cut(s) 828
Cac8I GCNNGC 5 cut(s) 32, 189, 351, 454, 636
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 1455
Cfr10I RCCGGY 2 cut(s) 593, 1393
Cfr42I CCGCGG 1 cut(s) 165
CseI GACGC 1 cut(s) 213
Csp6I GTAC 3 cut(s) 721, 1178, 1444
CspAI ACCGGT 1 cut(s) 593
CviAII CATG 5 cut(s) 49, 169, 211, 814, 1256
CviQI GTAC 3 cut(s) 721, 1178, 1444
DdeI CTNAG 7 cut(s) 11, 81, 107, 354, 675, 954, 1386
DpnI GATC 7 cut(s) 95, 306, 408, 547, 760, 1596, 1642
DpnII GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 1395
Eam1104I CTCTTC 6 cut(s) 441, 780, 957, 975, 1494, 1650
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 6 cut(s) 441, 780, 957, 975, 1494, 1650
EciI GGCGGA 1 cut(s) 1482
Ecl136II GAGCTC 4 cut(s) 336, 417, 501, 939
Eco24I GRGCYC 4 cut(s) 338, 419, 503, 941
Eco31I GGTCTC 1 cut(s) 584
Eco53kI GAGCTC 4 cut(s) 336, 417, 501, 939
Eco57I CTGAAG 1 cut(s) 582
EcoICRI GAGCTC 4 cut(s) 336, 417, 501, 939
EcoRII CCWGG 1 cut(s) 1360
EcoT38I GRGCYC 4 cut(s) 338, 419, 503, 941
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 5 cut(s) 52, 172, 214, 817, 1259
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 4 cut(s) 275, 411, 1495, 1519
FatI CATG 5 cut(s) 48, 168, 210, 813, 1255
FblI GTMKAC 1 cut(s) 252
FokI GGATG 4 cut(s) 214, 462, 804, 1100
FriOI GRGCYC 4 cut(s) 338, 419, 503, 941
FspBI CTAG 3 cut(s) 735, 842, 1632
GlaI GCGC 1 cut(s) 1454
HaeIII GGCC 3 cut(s) 317, 437, 1397
HapII CCGG 3 cut(s) 395, 594, 1394
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 1455
Hin1II CATG 5 cut(s) 52, 172, 214, 817, 1259
Hin6I GCGC 1 cut(s) 1453
HinP1I GCGC 1 cut(s) 1453
HinfI GANTC 7 cut(s) 119, 266, 517, 803, 820, 1137, 1540
HpaII CCGG 3 cut(s) 395, 594, 1394
HphI GGTGA 3 cut(s) 608, 1076, 1082
Hpy166II GTNNAC 4 cut(s) 253, 1018, 1204, 1263
Hpy188III TCNNGA 7 cut(s) 49, 260, 521, 789, 827, 1304, 1680
Hpy8I GTNNAC 4 cut(s) 253, 1018, 1204, 1263
Hpy99I CGWCG 3 cut(s) 153, 828, 1507
HpyAV CCTTC 6 cut(s) 307, 557, 759, 876, 1022, 1030
HpyCH4III ACNGT 2 cut(s) 159, 200
HpyCH4IV ACGT 2 cut(s) 600, 1502
HpyCH4V TGCA 5 cut(s) 383, 531, 813, 1623, 1668
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 458, 1418, 1421, 1504, 1567
HpyF3I CTNAG 7 cut(s) 11, 81, 107, 354, 675, 954, 1386
HpySE526I ACGT 2 cut(s) 600, 1502
Hsp92II CATG 5 cut(s) 52, 172, 214, 817, 1259
HspAI GCGC 1 cut(s) 1453
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
LmnI GCTCC 4 cut(s) 64, 333, 414, 1657
Lsp1109I GCAGC 9 cut(s) 367, 400, 403, 718, 1424, 1427, 1430, 1433, 1570
MaeI CTAG 3 cut(s) 735, 842, 1632
MaeII ACGT 2 cut(s) 600, 1502
MaeIII GTNAC 8 cut(s) 22, 76, 596, 681, 794, 1192, 1344, 1603
MalI GATC 7 cut(s) 95, 306, 408, 547, 760, 1596, 1642
MbiI CCGCTC 1 cut(s) 1478
MboI GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
MfeI CAATTG 4 cut(s) 339, 1233, 1565, 1598
MflI RGATCY 2 cut(s) 545, 1640
MhlI GDGCHC 5 cut(s) 338, 419, 503, 889, 941
MlyI GAGTC 4 cut(s) 113, 260, 526, 814
MmeI TCCRAC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 878
MseI TTAA 1 cut(s) 1482
MspA1I CMGCKG 2 cut(s) 164, 679
MspI CCGG 3 cut(s) 395, 594, 1394
MspR9I CCNGG 2 cut(s) 396, 1362
MunI CAATTG 4 cut(s) 339, 1233, 1565, 1598
MvaI CCWGG 1 cut(s) 1362
MvnI CGCG 2 cut(s) 164, 828
MwoI GCNNNNNNNGC 6 cut(s) 27, 458, 1418, 1421, 1504, 1567
NciI CCSGG 1 cut(s) 396
NdeII GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
NlaIII CATG 5 cut(s) 52, 172, 214, 817, 1259
NlaIV GGNNCC 4 cut(s) 465, 547, 951, 1659
NmuCI GTSAC 6 cut(s) 76, 596, 681, 794, 1192, 1344
NruI TCGCGA 1 cut(s) 828
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 48
PciI ACATGT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 1372
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 3 cut(s) 803, 1137, 1540
PflMI CCANNNNNTGG 2 cut(s) 183, 1361
PinAI ACCGGT 1 cut(s) 593
PleI GAGTC 4 cut(s) 113, 260, 525, 814
PpsI GAGTC 4 cut(s) 113, 260, 525, 814
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 4 cut(s) 338, 419, 503, 941
Psp6I CCWGG 1 cut(s) 1360
PspGI CCWGG 1 cut(s) 1360
PspN4I GGNNCC 4 cut(s) 465, 547, 951, 1659
PsuI RGATCY 2 cut(s) 545, 1640
PvuII CAGCTG 1 cut(s) 679
RruI TCGCGA 1 cut(s) 828
RsaI GTAC 3 cut(s) 722, 1179, 1445
RsaNI GTAC 3 cut(s) 721, 1178, 1444
SacI GAGCTC 4 cut(s) 338, 419, 503, 941
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 1482
Sau3AI GATC 7 cut(s) 93, 304, 406, 545, 758, 1594, 1640
ScaI AGTACT 1 cut(s) 1179
SchI GAGTC 4 cut(s) 113, 260, 526, 814
ScrFI CCNGG 2 cut(s) 396, 1362
SduI GDGCHC 5 cut(s) 338, 419, 503, 889, 941
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SpeI ACTAGT 1 cut(s) 841
SsiI CCGC 9 cut(s) 138, 162, 164, 461, 639, 854, 1476, 1493, 1496
SspMI CTAG 3 cut(s) 735, 842, 1632
SstI GAGCTC 4 cut(s) 338, 419, 503, 941
StyD4I CCNGG 2 cut(s) 394, 1360
TaaI ACNGT 2 cut(s) 159, 200
TaiI ACGT 2 cut(s) 603, 1505
TaqI TCGA 6 cut(s) 419, 497, 757, 935, 1314, 1375
TatI WGTACW 2 cut(s) 720, 1177
TauI GCSGC 5 cut(s) 140, 464, 641, 1478, 1498
TfiI GAWTC 3 cut(s) 803, 1137, 1540
Tru1I TTAA 1 cut(s) 1482
Tru9I TTAA 1 cut(s) 1482
TscAI CASTG 4 cut(s) 85, 162, 538, 1362
TseFI GTSAC 6 cut(s) 76, 596, 681, 794, 1192, 1344
TseI GCWGC 9 cut(s) 380, 388, 391, 731, 1412, 1415, 1418, 1421, 1558
Tsp45I GTSAC 6 cut(s) 76, 596, 681, 794, 1192, 1344
TspGWI ACGGA 5 cut(s) 238, 638, 742, 768, 872
TspRI CASTG 4 cut(s) 85, 162, 538, 1362
Van91I CCANNNNNTGG 2 cut(s) 183, 1361
XapI RAATTY 3 cut(s) 320, 704, 1001
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 3 cut(s) 735, 842, 1632
ZrmI AGTACT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.