MD11G1173900.v1.1

Protein FAF-like, chloroplastic

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
20306962 .. 20309343
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1173900.v1.1.491

Sequence Viewer

Length: 1596 bp
ATGATGAAGAAGACTATGGAGCAAGAGGTGGTCACTGAGAAGCAAGGGATCGTCACCGTTCTCGGTCCGTCAGACTCTGAAAGAACCAAAGCCGCTTCCTTGCGGCGAACACTGTCCGCGGACATGTCGTCCAAGAGATGGCTGGCTCAAAATGGTTTCTCTCCCATGAAGAAGATTGCGTCATCCGAAGAACTCTGCGGATCCGCAGACATGCGGGACAATTCATCTTCATCGTCCGAAGACGAAGATCATTACCAAGATCAAAGGAAGGCCAAATTCCATACTTGGAGCTCAATTGATGAGCAAGCTCAAAGGCAAAAAAACAAAGCCGAAGCTGCAAAGCAGCAGCCGGGACAAGCCGATCTTTGGAGCTCGATTGTATGTCAAAAGGCCAACGAAAAAGAGGCGAGCAAAGTGGCTACTGCAGCGCCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGCGCTTTGACTAAGAAGAGTCTTGAAGTTTGCACTGAAAGTCTTGGATCCGAGACTGGCTCTGAAGGGTTTTCTTCATACCCTACTTCCGAGACCAGTGACATAGAAGTAGTGGAGAAAGATCAGCAAGAAGACCAAGCCGTGGTTCAGCAACAAGAAGAAAAAGAAAAAGAGAAACCTCAGCGGTCAAAAGCATTTGATGAGAACGAATTCCGAGCTGTCAAATACAACTCTGCTGCTAGTAAGAAATTGCCTTCAGCTCGATCTTCCCCTCCACCTCTTTCGTCTTTATCAGGATGTGATGGGGTATCTGTTCACATGAGGACTCATCGCGACAACGGGCGACTAGTCCTTGAAGCGGTGTCTATACCTTCTCCAAATAACTTCCGTGCCGAACGCCATGATGGTCGCCTTGTCCTCACATTTCTCAATGCTACTCCTAGCTCTTGCGAGGCGCCTAAGTGTGAAGAGGTTGCTGATGAAGAAGACAAATTTAGAGAGGAAGAATTCGAGGAGAATGTGAACTTTGAGGAAGGAGAGGAGGAAAAAGAAAGCGAAAAAAGTGATGGTGATGATGTTGATGTTGATGTTGATGAGGATCAGGACGAGGAGAAAGAAAGTGATGAGGTTGAGAAATTGACAAGTAGAGTGGCAAATGTTCACAGTTTAGCATTAATGATGAATAAGCCGATTGGGTTAGCCAATAAGACTCATGGGTGGACTAACAAGTTCAATGAAGTAGTGAAATATGGAGGAGATGAAGAGGAGGTTGAAGTAGTGGAACCAACCCCAATTGCAAAGTCACTCCCTCCACGGCCTGGCCGCCTGGCTCGGTTGATACCTAAGCCACTGGCCACCACAAAAACAGCGGCAGCAGCAGCCTCTTTCAACGCTTACGAGTACTATTGGCGCACCAAGCCTACGACTGCCGCTCTCAACCCTCTTCCGCCACCAACGTCGCAGTCCCTAAAAAACAATGGCTTTATGTCCAAGAATCAGTTGGCAAATGAGCGGCAACAATTGCTTGTCTTGAGAGGGAACAAAGGGGATCATTTGCTCCCCTTTTCAAAGGGTTGCAAAGAGCCTAGAAGATCTCTTCTATTTTGGGAGCCTTATTGCATTGCCACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

59.1

Weight (kDa)

5.24

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 245 - 296 8e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011046)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 916
AccB7I CCANNNNNTGG 3 cut(s) 138, 604, 1280
AccBSI CCGCTC 2 cut(s) 1394, 1474
AccII CGCG 2 cut(s) 119, 795
AclWI GGATC 7 cut(s) 56, 195, 208, 504, 517, 1068, 1518
AcoI YGGCCR 2 cut(s) 1282, 1314
AcsI RAATTY 4 cut(s) 275, 671, 953, 968
AcuI CTGAAG 2 cut(s) 546, 702
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 1 cut(s) 1364
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 5 cut(s) 138, 366, 604, 820, 1280
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 6 cut(s) 488, 818, 1195, 1235, 1351, 1530
AhdI GACNNNNNGTC 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 808
AjnI CCWGG 2 cut(s) 1279, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AluBI AGCT 7 cut(s) 291, 308, 335, 372, 680, 722, 906
AluI AGCT 7 cut(s) 291, 308, 335, 372, 680, 722, 906
Alw21I GWGCWC 2 cut(s) 293, 374
Alw26I GTCTC 2 cut(s) 509, 548
AlwI GGATC 7 cut(s) 56, 195, 208, 504, 517, 1068, 1518
AlwNI CAGNNNCTG 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 5 cut(s) 270, 390, 1277, 1282, 1314
ApeKI GCWGC 8 cut(s) 335, 343, 346, 425, 698, 1334, 1337, 1340
ApoI RAATTY 4 cut(s) 275, 671, 953, 968
AseI ATTAAT 1 cut(s) 1136
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 4 cut(s) 430, 467, 919, 1374
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 46, 1043
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 1316
BamHI GGATCC 2 cut(s) 200, 509
BanI GGYRCC 1 cut(s) 916
BanII GRGCYC 2 cut(s) 293, 374
BbsI GAAGAC 4 cut(s) 17, 246, 600, 954
Bbv12I GWGCWC 2 cut(s) 293, 374
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 8 cut(s) 322, 355, 358, 437, 685, 1346, 1349, 1352
BccI CCATC 4 cut(s) 132, 758, 860, 1022
BceAI ACGGC 2 cut(s) 587, 1292
BciT130I CCWGG 2 cut(s) 1281, 1289
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 509, 548
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 4 cut(s) 702, 809, 903, 1548
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 3 cut(s) 431, 468, 920
BglII AGATCT 1 cut(s) 1553
BmcAI AGTACT 1 cut(s) 1364
Bme1390I CCNGG 3 cut(s) 351, 1281, 1289
Bme18I GGWCC 1 cut(s) 65
BmeRI GACNNNNNGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 5 cut(s) 202, 511, 918, 1245, 1572
BmrFI CCNGG 3 cut(s) 351, 1281, 1289
BpiI GAAGAC 4 cut(s) 17, 246, 600, 954
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu10I CCTNAGC 2 cut(s) 642, 1305
BpuEI CTTGAG 1 cut(s) 1513
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 917
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 117, 603, 1274
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 366, 604, 820, 1280
Bse1I ACTGG 3 cut(s) 523, 558, 1317
Bse3DI GCAATG 1 cut(s) 1581
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 2 cut(s) 1281, 1289
BseDI CCNNGG 3 cut(s) 117, 603, 1274
BseGI GGATG 3 cut(s) 182, 439, 764
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 5 cut(s) 138, 366, 604, 820, 1280
BseMI GCAATG 1 cut(s) 1581
BseMII CTCAG 2 cut(s) 27, 656
BseNI ACTGG 3 cut(s) 523, 558, 1317
BseRI GAGGAG 5 cut(s) 989, 1016, 1085, 1230, 1241
BseXI GCAGC 8 cut(s) 322, 355, 358, 437, 685, 1346, 1349, 1352
Bsh1236I CGCG 2 cut(s) 119, 795
BshFI GGCC 5 cut(s) 272, 392, 1279, 1284, 1316
BshNI GGYRCC 1 cut(s) 916
BsiHKAI GWGCWC 2 cut(s) 293, 374
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 3 cut(s) 230, 366, 1411
BslI CCNNNNNNNGG 5 cut(s) 138, 366, 604, 820, 1280
BsmAI GTCTC 2 cut(s) 509, 548
BsmFI GGGAC 3 cut(s) 230, 366, 1411
BsnI GGCC 5 cut(s) 272, 392, 1279, 1284, 1316
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 293, 374
Bsp68I TCGCGA 1 cut(s) 795
BspANI GGCC 5 cut(s) 272, 392, 1279, 1284, 1316
BspCNI CTCAG 2 cut(s) 28, 655
BspFNI CGCG 2 cut(s) 119, 795
BspLI GGNNCC 5 cut(s) 202, 511, 918, 1245, 1572
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 7 cut(s) 56, 195, 208, 504, 517, 1068, 1518
BspT107I GGYRCC 1 cut(s) 916
BspTNI GGTCTC 1 cut(s) 548
BsrBI CCGCTC 2 cut(s) 1394, 1474
BsrDI GCAATG 1 cut(s) 1581
BsrI ACTGG 3 cut(s) 523, 558, 1317
BssECI CCNNGG 3 cut(s) 117, 603, 1274
BssNI GRCGYC 1 cut(s) 917
Bst2UI CCWGG 2 cut(s) 1281, 1289
Bst4CI ACNGT 3 cut(s) 58, 114, 1127
Bst6I CTCTTC 5 cut(s) 473, 924, 1218, 1410, 1563
BstACI GRCGYC 1 cut(s) 917
BstAPI GCANNNNNTGC 1 cut(s) 1483
BstC8I GCNNGC 3 cut(s) 144, 306, 409
BstDEI CTNAG 5 cut(s) 36, 474, 642, 921, 1305
BstDSI CCRYGG 3 cut(s) 117, 603, 1274
BstF5I GGATG 3 cut(s) 182, 439, 764
BstFNI CGCG 2 cut(s) 119, 795
BstH2I RGCGCY 3 cut(s) 431, 468, 920
BstHHI GCGC 4 cut(s) 430, 467, 919, 1374
BstMAI GTCTC 2 cut(s) 509, 548
BstMWI GCNNNNNNNGC 6 cut(s) 335, 425, 1337, 1340, 1378, 1483
BstNI CCWGG 2 cut(s) 1281, 1289
BstNSI RCATGY 2 cut(s) 127, 214
BstSCI CCNGG 3 cut(s) 349, 1279, 1287
BstSFI CTRYAG 1 cut(s) 423
BstUI CGCG 2 cut(s) 119, 795
BstV1I GCAGC 8 cut(s) 322, 355, 358, 437, 685, 1346, 1349, 1352
BstV2I GAAGAC 4 cut(s) 17, 246, 600, 954
BstX2I RGATCY 3 cut(s) 200, 509, 1553
BstYI RGATCY 3 cut(s) 200, 509, 1553
BsuRI GGCC 5 cut(s) 272, 392, 1279, 1284, 1316
BtgI CCRYGG 3 cut(s) 117, 603, 1274
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 3 cut(s) 182, 439, 764
BtsIMutI CAGTG 5 cut(s) 33, 110, 495, 565, 1310
BtuMI TCGCGA 1 cut(s) 795
Cac8I GCNNGC 3 cut(s) 144, 306, 409
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 4 cut(s) 430, 467, 919, 1374
Cfr13I GGNCC 1 cut(s) 65
Cfr42I CCGCGG 1 cut(s) 120
CpoI CGGWCCG 1 cut(s) 65
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 1363
CspCI CAANNNNNGTGG 2 cut(s) 1092, 1127
CspI CGGWCCG 1 cut(s) 65
CviAII CATG 6 cut(s) 124, 166, 211, 781, 863, 1175
CviQI GTAC 1 cut(s) 1363
DdeI CTNAG 5 cut(s) 36, 474, 642, 921, 1305
DinI GGCGCC 1 cut(s) 918
DriI GACNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 1282, 1314
Eam1104I CTCTTC 5 cut(s) 473, 924, 1218, 1410, 1563
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 5 cut(s) 473, 924, 1218, 1410, 1563
EciI GGCGGA 1 cut(s) 1398
Ecl136II GAGCTC 2 cut(s) 291, 372
Eco24I GRGCYC 2 cut(s) 293, 374
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 65
Eco47III AGCGCT 1 cut(s) 466
Eco53kI GAGCTC 2 cut(s) 291, 372
Eco57I CTGAAG 2 cut(s) 546, 702
EcoICRI GAGCTC 2 cut(s) 291, 372
EcoRI GAATTC 2 cut(s) 671, 968
EcoRII CCWGG 2 cut(s) 1279, 1287
EcoT38I GRGCYC 2 cut(s) 293, 374
EgeI GGCGCC 1 cut(s) 918
EheI GGCGCC 1 cut(s) 918
FaeI CATG 6 cut(s) 127, 169, 214, 784, 866, 1178
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 3 cut(s) 230, 366, 1411
FatI CATG 6 cut(s) 123, 165, 210, 780, 862, 1174
FauI CCCGC 1 cut(s) 207
FokI GGATG 3 cut(s) 169, 426, 771
FriOI GRGCYC 2 cut(s) 293, 374
FspBI CTAG 4 cut(s) 702, 809, 903, 1548
GlaI GCGC 4 cut(s) 429, 466, 918, 1373
HaeII RGCGCY 3 cut(s) 431, 468, 920
HaeIII GGCC 5 cut(s) 272, 392, 1279, 1284, 1316
HapII CCGG 1 cut(s) 350
HgaI GACGC 1 cut(s) 168
HhaI GCGC 4 cut(s) 430, 467, 919, 1374
Hin1I GRCGYC 1 cut(s) 917
Hin1II CATG 6 cut(s) 127, 169, 214, 784, 866, 1178
Hin6I GCGC 4 cut(s) 428, 465, 917, 1372
HinP1I GCGC 4 cut(s) 428, 465, 917, 1372
HinfI GANTC 5 cut(s) 74, 481, 787, 1171, 1456
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 46, 1043
Hpy166II GTNNAC 4 cut(s) 778, 985, 1123, 1182
Hpy188I TCNGA 8 cut(s) 73, 79, 187, 238, 514, 526, 553, 677
Hpy188III TCNNGA 6 cut(s) 485, 756, 794, 1064, 1492, 1593
Hpy8I GTNNAC 4 cut(s) 778, 985, 1123, 1182
Hpy99I CGWCG 1 cut(s) 1423
HpyAV CCTTC 5 cut(s) 262, 521, 726, 843, 989
HpyCH4III ACNGT 3 cut(s) 58, 114, 1127
HpyCH4IV ACGT 1 cut(s) 1418
HpyCH4V TGCA 6 cut(s) 338, 425, 495, 1259, 1539, 1581
HpyF10VI GCNNNNNNNGC 6 cut(s) 335, 425, 1337, 1340, 1378, 1483
HpyF3I CTNAG 5 cut(s) 36, 474, 642, 921, 1305
HpySE526I ACGT 1 cut(s) 1418
Hsp92I GRCGYC 1 cut(s) 917
Hsp92II CATG 6 cut(s) 127, 169, 214, 784, 866, 1178
HspAI GCGC 4 cut(s) 428, 465, 917, 1372
KasI GGCGCC 1 cut(s) 916
KspI CCGCGG 1 cut(s) 120
LmnI GCTCC 5 cut(s) 19, 288, 369, 1524, 1570
Lsp1109I GCAGC 8 cut(s) 322, 355, 358, 437, 685, 1346, 1349, 1352
MaeI CTAG 4 cut(s) 702, 809, 903, 1548
MaeII ACGT 1 cut(s) 1418
MaeIII GTNAC 4 cut(s) 31, 52, 560, 1263
MbiI CCGCTC 2 cut(s) 1394, 1474
MfeI CAATTG 3 cut(s) 294, 1254, 1481
MflI RGATCY 3 cut(s) 200, 509, 1553
MhlI GDGCHC 2 cut(s) 293, 374
MlsI TGGCCA 1 cut(s) 1316
MluNI TGGCCA 1 cut(s) 1316
Mly113I GGCGCC 1 cut(s) 917
MlyI GAGTC 4 cut(s) 68, 490, 781, 1165
Mox20I TGGCCA 1 cut(s) 1316
MroXI GAANNNNTTC 1 cut(s) 671
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 1316
MspA1I CMGCKG 3 cut(s) 119, 646, 1331
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 3 cut(s) 351, 1281, 1289
MunI CAATTG 3 cut(s) 294, 1254, 1481
MvaI CCWGG 2 cut(s) 1281, 1289
MvnI CGCG 2 cut(s) 119, 795
MwoI GCNNNNNNNGC 6 cut(s) 335, 425, 1337, 1340, 1378, 1483
NarI GGCGCC 1 cut(s) 917
NciI CCSGG 1 cut(s) 351
NlaIII CATG 6 cut(s) 127, 169, 214, 784, 866, 1178
NlaIV GGNNCC 5 cut(s) 202, 511, 918, 1245, 1572
NmuCI GTSAC 4 cut(s) 31, 52, 560, 1263
NruI TCGCGA 1 cut(s) 795
NspI RCATGY 2 cut(s) 127, 214
PciI ACATGT 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 1 cut(s) 1456
PflMI CCANNNNNTGG 3 cut(s) 138, 604, 1280
PleI GAGTC 4 cut(s) 68, 489, 781, 1165
PluTI GGCGCC 1 cut(s) 920
PpsI GAGTC 4 cut(s) 68, 489, 781, 1165
PscI ACATGT 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 1136
Psp124BI GAGCTC 2 cut(s) 293, 374
Psp6I CCWGG 2 cut(s) 1279, 1287
PspGI CCWGG 2 cut(s) 1279, 1287
PspN4I GGNNCC 5 cut(s) 202, 511, 918, 1245, 1572
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 3 cut(s) 200, 509, 1553
RruI TCGCGA 1 cut(s) 795
RsaI GTAC 1 cut(s) 1364
RsaNI GTAC 1 cut(s) 1363
Rsr2I CGGWCCG 1 cut(s) 65
RsrII CGGWCCG 1 cut(s) 65
SacI GAGCTC 2 cut(s) 293, 374
SacII CCGCGG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 1136
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 1364
SchI GAGTC 4 cut(s) 68, 490, 781, 1165
ScrFI CCNGG 3 cut(s) 351, 1281, 1289
SduI GDGCHC 2 cut(s) 293, 374
SfcI CTRYAG 1 cut(s) 423
SfoI GGCGCC 1 cut(s) 918
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 1492
SmoI CTYRAG 1 cut(s) 1492
SpeI ACTAGT 1 cut(s) 808
SspDI GGCGCC 1 cut(s) 916
SspMI CTAG 4 cut(s) 702, 809, 903, 1548
SstI GAGCTC 2 cut(s) 293, 374
StyD4I CCNGG 3 cut(s) 349, 1279, 1287
TaaI ACNGT 3 cut(s) 58, 114, 1127
TaiI ACGT 1 cut(s) 1421
TaqI TCGA 4 cut(s) 374, 461, 724, 972
TaqII GACCGA 1 cut(s) 53
TatI WGTACW 1 cut(s) 1362
TauI GCSGC 6 cut(s) 95, 106, 1287, 1334, 1394, 1477
TfiI GAWTC 1 cut(s) 1456
Tru1I TTAA 1 cut(s) 1136
Tru9I TTAA 1 cut(s) 1136
TscAI CASTG 5 cut(s) 40, 117, 502, 565, 1317
TseFI GTSAC 4 cut(s) 31, 52, 560, 1263
TseI GCWGC 8 cut(s) 335, 343, 346, 425, 698, 1334, 1337, 1340
Tsp45I GTSAC 4 cut(s) 31, 52, 560, 1263
TspGWI ACGGA 2 cut(s) 57, 839
TspRI CASTG 5 cut(s) 40, 117, 502, 565, 1317
Van91I CCANNNNNTGG 3 cut(s) 138, 604, 1280
VpaK11BI GGWCC 1 cut(s) 65
VspI ATTAAT 1 cut(s) 1136
XapI RAATTY 4 cut(s) 275, 671, 953, 968
XceI RCATGY 2 cut(s) 127, 214
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 1459
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 4 cut(s) 702, 809, 903, 1548
ZrmI AGTACT 1 cut(s) 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.