Rw5G029890

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011046
Physical Location & Seq
Forward (+)
46733196 .. 46734867
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029890.1

Sequence Viewer

Length: 1611 bp
ATGCCGGGTTGTCTAAGCAAGAGTTTACACTCTTCTTCTCATTTCATGAAGAACATGGAGCAAGAAGCCAAAGTCATTGAGAAGCAGGGGATCGTCACCATTCTCGGCTCCGACTGCGAAAGAAACAAAGCAGCTTCTCTGCGACGAACACTGTCGGCTGACATGTCGTCCAAGAAATGGCTTGCTCAACAAGGTTTCTTCTCTCCCATGAAAAAGATTGCATCATCTAAAGAGCTCTCCATGTCCATAGCGGACAGCAACTCATCTTCCTCCTCTGATGAGGACGAGGATCATTTCCGAGACAGGAAGGCTCAGCAACAGAAGATGTTCCATATATGGACCCCCATCGACCAAGATGATCAGATTAAGAAGACGAAGAAAGAGGTGGCCGAGGGAAAATTTGATATCTGGAGCTCACTGGTGAATCAAAAGGATAGAGCAGAAAACGAAGCAAACAAGATTCCAGAAGCACCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGCTCTTTGAAAGGAAAGAGTCTTGAAGTGTGCACTGAAAGCCTCGGATCCGAGACTGGTTCTGAAGGCTTTGGATCATACCCTTCTTCAGAAACCGGAGACATAGAAGTGGTTATTAAAGAGGAAGAACAAGTGGCAGAGATTGAACAACCGCCGCAGCAACAACAAGAAGATCAAGAGAAACAAGTGAATACACAAGCAGTTTCACATGTGGAAGAGTTCCGAGTTGTCAAGTACAACTCTGCTGCTGCTAAGAAATCGGCTGCGGTGGTGGTTCGATCATTTCCTCCTCCTATCCCATCTTTATCGGGTTCTGATGGAGCGTCTCTTCGCATTAAGACTCACCGGGACAACGGGCGAGTAGTCCTTGAAGCCGTGTCGATGCCTTCTCCCAATAACTTCCGTGCTCAACGCCAAGACGGCCGCCTTGTCCTTACTTTTGTGAGTGCTACTCCGAGCTCTTTTGAGGAGTACTCAGAGAATGAAGAAGTGGTTGCTGAAGAGCAGAAAGAGGAATTAGAGTACGAGGAGAAATTTGTCAACTTTGCGGAAAGCGAGACTGGGGACGAGGATGACGAGGAGGATGAGGATAGAGAGAAAGAGGAGGAAGTTGAGGTTGAGAGAGTAGTAGGAAAAGAAAGTGGAATCAAGGAAATAGAAATTGGGATGGAGGAAGCACCAAAAATGTTGACGAGTAGGGTGACCACTCCAATTGGGTTGGCTAATAGGAGTCAAGGGTGGGCTGCTAACAAGTTTAATCAAGTAGTTAAGTATGGAAGGGATGAGGAGGAGGAAACAATGAAGCCAACCCCACTAGCACAATCACTTCCACCAAGGCCCGCCGCAGCAAAAGCAACACCCGCCGCCGCAGCTTCTTTGAATGCTTACGAGTACTATTGGCGCACCAAGCCCACAGCAGCACTCAACCCACTTTCCCAAGCAGCTTCCCCGCCCATGAAGAGCAAGGATCAAATGGCAAATCAGCAGCAACAATTGCTGGTTTTGAGAGGCAACAAAGGGGATCACATGGTTCCTTTGTCAAAGGGTTGCAAAGAGCCTAGAAGGTCTCTTCTATTCTGGGAGCCATACTGCATTGCCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

536

Amino Acids

59.75

Weight (kDa)

5.13

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 262 - 315 6.7e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AclWI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1479, 1533
AcoI YGGCCR 2 cut(s) 387, 925
AcsI RAATTY 2 cut(s) 398, 1037
AcuI CTGAAG 3 cut(s) 576, 588, 1023
AfaI GTAC 4 cut(s) 740, 977, 1028, 1397
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 2 cut(s) 162, 712
AgsI TTSAA 5 cut(s) 514, 530, 650, 875, 1384
AhdI GACNNNNNGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 1149, 1181
AluBI AGCT 7 cut(s) 134, 235, 414, 507, 963, 1376, 1448
AluI AGCT 7 cut(s) 134, 235, 414, 507, 963, 1376, 1448
Alw21I GWGCWC 6 cut(s) 237, 416, 509, 539, 913, 965
Alw26I GTCTC 6 cut(s) 294, 551, 597, 834, 1055, 1575
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1479, 1533
AoxI GGCC 3 cut(s) 387, 925, 1340
ApaLI GTGCAC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 398, 1037
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1407
AspS9I GGNCC 2 cut(s) 339, 1341
AsuC2I CCSGG 2 cut(s) 6, 851
AsuHPI GGTGA 4 cut(s) 88, 433, 839, 1216
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 539
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 4 cut(s) 237, 416, 509, 965
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 6 cut(s) 237, 416, 509, 539, 913, 965
BccI CCATC 4 cut(s) 353, 811, 815, 1165
BceAI ACGGC 2 cut(s) 863, 940
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 2 cut(s) 6, 851
BcoDI GTCTC 6 cut(s) 294, 551, 597, 834, 1055, 1575
BfaI CTAG 2 cut(s) 1319, 1563
BglI GCCNNNNNGGC 1 cut(s) 924
BlpI GCTNAGC 1 cut(s) 312
BmcAI AGTACT 2 cut(s) 977, 1397
Bme1390I CCNGG 2 cut(s) 6, 851
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 339, 1341
BmiI GGNNCC 5 cut(s) 109, 341, 553, 1536, 1587
BmrFI CCNGG 2 cut(s) 6, 851
BmrI ACTGGG 1 cut(s) 1074
BmsI GCATC 2 cut(s) 230, 876
BmuI ACTGGG 1 cut(s) 1074
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 4 cut(s) 940, 972, 962, 994
BpmI CTGGAG 1 cut(s) 430
Bpu1102I GCTNAGC 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 6, 851
BsaI GGTCTC 1 cut(s) 1575
BsaJI CCNNGG 3 cut(s) 390, 547, 1337
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 3 cut(s) 423, 565, 1069
Bse3DI GCAATG 1 cut(s) 1596
BseDI CCNNGG 3 cut(s) 390, 547, 1337
BseGI GGATG 5 cut(s) 481, 1081, 1093, 1176, 1291
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 1596
BseMII CTCAG 2 cut(s) 326, 993
BseNI ACTGG 3 cut(s) 423, 565, 1069
BseRI GAGGAG 8 cut(s) 262, 783, 986, 1046, 1097, 1121, 1304, 1307
BseSI GKGCMC 1 cut(s) 539
BseX3I CGGCCG 1 cut(s) 925
Bsh1285I CGRYCG 1 cut(s) 928
BshFI GGCC 3 cut(s) 389, 927, 1342
BsiEI CGRYCG 1 cut(s) 928
BsiHKAI GWGCWC 6 cut(s) 237, 416, 509, 539, 913, 965
BsiSI CCGG 3 cut(s) 5, 600, 850
BslFI GGGAC 2 cut(s) 866, 1082
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 6 cut(s) 294, 551, 597, 834, 1055, 1575
BsmBI CGTCTC 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 866, 1082
BsmI GAATGC 1 cut(s) 1390
BsnI GGCC 3 cut(s) 389, 927, 1342
Bso31I GGTCTC 1 cut(s) 1575
Bsp1286I GDGCHC 6 cut(s) 237, 416, 509, 539, 913, 965
Bsp143I GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
Bsp1720I GCTNAGC 1 cut(s) 312
BspANI GGCC 3 cut(s) 389, 927, 1342
BspCNI CTCAG 2 cut(s) 325, 992
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 5 cut(s) 109, 341, 553, 1536, 1587
BspPI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1479, 1533
BspQI GCTCTTC 2 cut(s) 999, 1457
BspTNI GGTCTC 1 cut(s) 1575
BsrDI GCAATG 1 cut(s) 1596
BsrI ACTGG 3 cut(s) 423, 565, 1069
BssECI CCNNGG 3 cut(s) 390, 547, 1337
BssMI GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
BssT1I CCWWGG 1 cut(s) 1337
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 6 cut(s) 37, 714, 837, 999, 1457, 1578
BstAPI GCANNNNNTGC 1 cut(s) 1498
BstC8I GCNNGC 2 cut(s) 183, 1344
BstDEI CTNAG 4 cut(s) 14, 312, 756, 979
BstEII GGTNACC 1 cut(s) 1204
BstF5I GGATG 5 cut(s) 481, 1081, 1093, 1176, 1291
BstHHI GCGC 1 cut(s) 1407
BstKTI GATC 9 cut(s) 93, 292, 361, 554, 581, 679, 785, 1474, 1528
BstMAI GTCTC 6 cut(s) 294, 551, 597, 834, 1055, 1575
BstMBI GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
BstMCI CGRYCG 1 cut(s) 928
BstMWI GCNNNNNNNGC 8 cut(s) 114, 543, 924, 1355, 1364, 1373, 1411, 1498
BstNSI RCATGY 2 cut(s) 166, 716
BstPI GGTNACC 1 cut(s) 1204
BstSCI CCNGG 2 cut(s) 4, 849
BstSLI GKGCMC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 1 cut(s) 925
BsuRI GGCC 3 cut(s) 389, 927, 1342
BtsCI GGATG 5 cut(s) 481, 1081, 1093, 1176, 1291
BtsIMutI CAGTG 3 cut(s) 149, 416, 537
Cac8I GCNNGC 2 cut(s) 183, 1344
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1407
Cfr13I GGNCC 2 cut(s) 339, 1341
CseI GACGC 1 cut(s) 816
Csp6I GTAC 4 cut(s) 739, 976, 1027, 1396
CspCI CAANNNNNGTGG 2 cut(s) 1198, 1233
CviAII CATG 8 cut(s) 46, 55, 163, 208, 241, 713, 1459, 1531
CviQI GTAC 4 cut(s) 739, 976, 1027, 1396
DdeI CTNAG 4 cut(s) 14, 312, 756, 979
DpnI GATC 9 cut(s) 92, 291, 360, 553, 580, 678, 784, 1473, 1527
DpnII GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 387, 925
EagI CGGCCG 1 cut(s) 925
Eam1104I CTCTTC 6 cut(s) 37, 714, 837, 999, 1457, 1578
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 6 cut(s) 37, 714, 837, 999, 1457, 1578
Ecl136II GAGCTC 4 cut(s) 235, 414, 507, 963
EclXI CGGCCG 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 1337
Eco24I GRGCYC 4 cut(s) 237, 416, 509, 965
Eco31I GGTCTC 1 cut(s) 1575
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 925
Eco53kI GAGCTC 4 cut(s) 235, 414, 507, 963
Eco57I CTGAAG 3 cut(s) 576, 588, 1023
Eco91I GGTNACC 1 cut(s) 1204
EcoICRI GAGCTC 4 cut(s) 235, 414, 507, 963
EcoO65I GGTNACC 1 cut(s) 1204
EcoRV GATATC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 1337
EcoT38I GRGCYC 4 cut(s) 237, 416, 509, 965
ErhI CCWWGG 1 cut(s) 1337
Esp3I CGTCTC 1 cut(s) 834
FaeI CATG 8 cut(s) 49, 58, 166, 211, 244, 716, 1462, 1534
FaqI GGGAC 2 cut(s) 866, 1082
FatI CATG 8 cut(s) 45, 54, 162, 207, 240, 712, 1458, 1530
FauI CCCGC 3 cut(s) 1351, 1372, 1461
FbaI TGATCA 1 cut(s) 358
FokI GGATG 5 cut(s) 468, 1088, 1100, 1183, 1298
FriOI GRGCYC 4 cut(s) 237, 416, 509, 965
FspBI CTAG 2 cut(s) 1319, 1563
GlaI GCGC 1 cut(s) 1406
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 3 cut(s) 389, 927, 1342
HapII CCGG 3 cut(s) 5, 600, 850
HgaI GACGC 1 cut(s) 816
HhaI GCGC 1 cut(s) 1407
Hin1II CATG 8 cut(s) 49, 58, 166, 211, 244, 716, 1462, 1534
Hin6I GCGC 1 cut(s) 1405
HinP1I GCGC 1 cut(s) 1405
HincII GTYRAC 2 cut(s) 1045, 1194
HindII GTYRAC 2 cut(s) 1045, 1194
HinfI GANTC 6 cut(s) 424, 460, 523, 844, 1149, 1234
HpaII CCGG 3 cut(s) 5, 600, 850
HphI GGTGA 4 cut(s) 88, 433, 839, 1216
Hpy166II GTNNAC 4 cut(s) 26, 537, 1045, 1194
Hpy188III TCNNGA 6 cut(s) 46, 409, 464, 527, 680, 1608
Hpy8I GTNNAC 4 cut(s) 26, 537, 1045, 1194
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 6 cut(s) 301, 563, 597, 900, 1275, 1560
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 4 cut(s) 221, 537, 1554, 1596
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 543, 924, 1355, 1364, 1373, 1411, 1498
HpyF3I CTNAG 4 cut(s) 14, 312, 756, 979
Hsp92II CATG 8 cut(s) 49, 58, 166, 211, 244, 716, 1462, 1534
HspAI GCGC 1 cut(s) 1405
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
LguI GCTCTTC 2 cut(s) 999, 1457
LmnI GCTCC 5 cut(s) 58, 113, 411, 824, 1585
LweI GCATC 2 cut(s) 230, 876
MaeI CTAG 2 cut(s) 1319, 1563
MaeIII GTNAC 2 cut(s) 94, 1204
MalI GATC 9 cut(s) 92, 291, 360, 553, 580, 678, 784, 1473, 1527
MboI GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
MfeI CAATTG 2 cut(s) 1215, 1496
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 6 cut(s) 237, 416, 509, 539, 913, 965
MluCI AATT 6 cut(s) 398, 1019, 1037, 1164, 1215, 1496
MlyI GAGTC 3 cut(s) 532, 838, 1243
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 5 cut(s) 366, 621, 840, 1260, 1272
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 3 cut(s) 5, 600, 850
MspR9I CCNGG 2 cut(s) 6, 851
MunI CAATTG 2 cut(s) 1215, 1496
Mva1269I GAATGC 1 cut(s) 1390
MwoI GCNNNNNNNGC 8 cut(s) 114, 543, 924, 1355, 1364, 1373, 1411, 1498
NciI CCSGG 2 cut(s) 6, 851
NdeII GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
NlaIII CATG 8 cut(s) 49, 58, 166, 211, 244, 716, 1462, 1534
NlaIV GGNNCC 5 cut(s) 109, 341, 553, 1536, 1587
NmeAIII GCCGAG 2 cut(s) 84, 415
NmuCI GTSAC 2 cut(s) 94, 1204
NspI RCATGY 2 cut(s) 166, 716
PagI TCATGA 1 cut(s) 45
PciI ACATGT 2 cut(s) 162, 712
PciSI GCTCTTC 2 cut(s) 999, 1457
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 1 cut(s) 1390
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 424, 460, 1149
PflMI CCANNNNNTGG 1 cut(s) 177
PleI GAGTC 3 cut(s) 531, 838, 1242
PpsI GAGTC 3 cut(s) 531, 838, 1242
PscI ACATGT 2 cut(s) 162, 712
Psp124BI GAGCTC 4 cut(s) 237, 416, 509, 965
PspEI GGTNACC 1 cut(s) 1204
PspN4I GGNNCC 5 cut(s) 109, 341, 553, 1536, 1587
PspPI GGNCC 2 cut(s) 339, 1341
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 4 cut(s) 740, 977, 1028, 1397
RsaNI GTAC 4 cut(s) 739, 976, 1027, 1396
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 4 cut(s) 237, 416, 509, 965
SapI GCTCTTC 2 cut(s) 999, 1457
SaqAI TTAA 5 cut(s) 366, 621, 840, 1260, 1272
Sau3AI GATC 9 cut(s) 90, 289, 358, 551, 578, 676, 782, 1471, 1525
Sau96I GGNCC 2 cut(s) 339, 1341
ScaI AGTACT 2 cut(s) 977, 1397
SchI GAGTC 3 cut(s) 532, 838, 1243
ScrFI CCNGG 2 cut(s) 6, 851
SduI GDGCHC 6 cut(s) 237, 416, 509, 539, 913, 965
SfaNI GCATC 2 cut(s) 230, 876
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 6 cut(s) 398, 1019, 1037, 1164, 1215, 1496
SspMI CTAG 2 cut(s) 1319, 1563
SstI GAGCTC 4 cut(s) 237, 416, 509, 965
StyD4I CCNGG 2 cut(s) 4, 849
StyI CCWWGG 1 cut(s) 1337
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 348, 503, 781, 884
TasI AATT 6 cut(s) 398, 1019, 1037, 1164, 1215, 1496
TatI WGTACW 3 cut(s) 738, 975, 1395
TauI GCSGC 5 cut(s) 661, 930, 1349, 1370, 1373
TfiI GAWTC 3 cut(s) 424, 460, 1149
Tru1I TTAA 5 cut(s) 366, 621, 840, 1260, 1272
Tru9I TTAA 5 cut(s) 366, 621, 840, 1260, 1272
TscAI CASTG 3 cut(s) 156, 423, 544
TseFI GTSAC 2 cut(s) 94, 1204
Tsp45I GTSAC 2 cut(s) 94, 1204
TspDTI ATGAA 7 cut(s) 34, 62, 224, 470, 1002, 1319, 1475
TspGWI ACGGA 1 cut(s) 896
TspRI CASTG 3 cut(s) 156, 423, 544
Van91I CCANNNNNTGG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 2 cut(s) 398, 1037
XceI RCATGY 2 cut(s) 166, 716
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 1319, 1563
ZrmI AGTACT 2 cut(s) 977, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.