Rmu_co8499011.1_g000001

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8499011.1
OG0011046
Physical Location & Seq
Forward (+)
1 .. 2207
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8499011.1_g000001.1.cds

Sequence Viewer

Length: 1758 bp
ctacttcttagcagacctctgttgggtgctacctctttgcctaattcttctcacatccatcagcatctactctctgagtttaagatgccgggttgtctaagcaagagtttacactcttcttctcatttcatgaagaacatggagcaagaagccaaagtcactgagaagcaggggatcgtcaccattctcggctccgactgcgaaagaaacaaagcagcttctctgcgacgaacactgtcggccgacatgtcgtccaagaaatggcttgctcaacaaggtttcttctctcccatgaaaaagattgcatcatctaaagagctctccatgtccatagcggacagcaactcatcttcctcctctgatgaggacgaggatcatttccgaaacaggaaggctcagcaacagaagatgttccatatatggacccccatcgatcaagatgatcagattaagaagacgaagaaagaggtggccgagggaaaatttgatatctggagctcactggtgaatcaaaaggatggagcagaaaacgaagcaaacaagattccagaagcaccttatgttcatcctcttgtgaagaaacaatcgagctctttgaaaggaaagagtcttgaagtgtgcactgaaagcctcggatccgagactggttctgaaggctttggatcatacccttcttcagaaaccggagacatagaagtggttattaaagaggaagaacaagtggcagagattgaacaaccgccgcagcaacaacaagaagatcaagagaaacaagtgaatacacaagcagtttcgcatgtggaagagttccgagttgtcaagtacaactctgctgctgctaagaaatcggctgcggtggtggttcgatcatttcctcctcctatcccatctttatcgggttctgatggagcgtctcttcgcattaagactcaccgggacaacgggcgagtagtccttgaagccgtgtcgatgccttctcccaataacttccgtgctcaacgccaagacggccgccttgtccttacttttgtgagtgctactccgagctcttttgaggagtactcagagaatgaagaagtggttgctgaagagcagaaagaggaattagagtacgaggagaaatttgtcaactttgcggaaagcgagactggggacgaggatgacgaggaggatgaggatagagagaaagaggaggaagttgaggttgagagagtagtaggaaaagaaagtggaatcaaggaaatagaaattgggatggaggaagcaccaaaaatgttgacgagtagggtgacaactgttcataggctagcactaatgatgaaaaagccaattgggttggctaataggagtcaagggtgggctgctaacaagtttaatcaagtagttaagtatggaagggatgaggaggaggaaacaatgaagccaacaccactagcacaatcacttccaccaaggcccggccgcgtggctcggttgatacctaagtcacaggccgcagcaaaagcaacacccgccgccgcagcttctttgaatgcttacgagtactattggcgcaccaagcccacagcagcactcaacccactttcccaagcagcttccccgcccatgaagagcaaggatcaaatggcaaatcagcagcaacaattgctggttttgagaggcaacaaaggggatcacatggttcctttgtcaaagggttgcaaagagcctagaaggtctcttctattctgggagccatactgcattgccacttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

585

Amino Acids

65.14

Weight (kDa)

5.63

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AccII CGCG 1 cut(s) 1464
AclWI GGATC 7 cut(s) 182, 381, 630, 643, 670, 1626, 1680
AcoI YGGCCR 4 cut(s) 240, 471, 1009, 1459
AcsI RAATTY 2 cut(s) 482, 1121
AcuI CTGAAG 3 cut(s) 660, 672, 1107
AfaI GTAC 4 cut(s) 824, 1061, 1112, 1544
AfiI CCNNNNNNNGG 3 cut(s) 23, 261, 1457
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 598, 614, 734, 959, 1531
AhdI GACNNNNNGTC 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 1233, 1265
AluBI AGCT 7 cut(s) 218, 319, 498, 591, 1047, 1523, 1595
AluI AGCT 7 cut(s) 218, 319, 498, 591, 1047, 1523, 1595
Alw21I GWGCWC 6 cut(s) 321, 500, 593, 623, 997, 1049
Alw26I GTCTC 5 cut(s) 635, 681, 918, 1139, 1722
Alw44I GTGCAC 1 cut(s) 619
AlwI GGATC 7 cut(s) 182, 381, 630, 643, 670, 1626, 1680
AoxI GGCC 6 cut(s) 240, 471, 1009, 1454, 1459, 1491
ApaLI GTGCAC 1 cut(s) 619
ApoI RAATTY 2 cut(s) 482, 1121
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 1554
AspS9I GGNCC 2 cut(s) 423, 1455
AsuC2I CCSGG 3 cut(s) 90, 935, 1458
AsuHPI GGTGA 4 cut(s) 172, 517, 923, 1300
AsuNHI GCTAGC 1 cut(s) 1306
AvaII GGWCC 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 623
BaeI ACNNNNGTAYC 2 cut(s) 1469, 1502
BamHI GGATCC 1 cut(s) 635
BanII GRGCYC 4 cut(s) 321, 500, 593, 1049
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 6 cut(s) 321, 500, 593, 623, 997, 1049
BccI CCATC 6 cut(s) 66, 437, 512, 895, 899, 1249
BceAI ACGGC 2 cut(s) 947, 1024
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 3 cut(s) 90, 935, 1458
BcoDI GTCTC 5 cut(s) 635, 681, 918, 1139, 1722
BfaI CTAG 3 cut(s) 1307, 1433, 1710
BglI GCCNNNNNGGC 1 cut(s) 1008
BlpI GCTNAGC 1 cut(s) 396
BmcAI AGTACT 2 cut(s) 1061, 1544
Bme1390I CCNGG 3 cut(s) 90, 935, 1458
Bme18I GGWCC 1 cut(s) 423
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 423, 1455
BmiI GGNNCC 5 cut(s) 193, 425, 637, 1683, 1734
BmrFI CCNGG 3 cut(s) 90, 935, 1458
BmrI ACTGGG 1 cut(s) 1158
BmsI GCATC 4 cut(s) 73, 75, 314, 960
BmtI GCTAGC 1 cut(s) 1310
BmuI ACTGGG 1 cut(s) 1158
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 4 cut(s) 1024, 1056, 1046, 1078
BpmI CTGGAG 1 cut(s) 514
Bpu1102I GCTNAGC 1 cut(s) 396
BpuMI CCSGG 3 cut(s) 90, 935, 1458
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 1722
BsaJI CCNNGG 3 cut(s) 474, 631, 1451
BsaWI WCCGGW 1 cut(s) 683
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 261, 1457
Bse1I ACTGG 3 cut(s) 507, 649, 1153
Bse3DI GCAATG 1 cut(s) 1743
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 474, 631, 1451
BseGI GGATG 7 cut(s) 54, 523, 565, 1165, 1177, 1260, 1405
BseLI CCNNNNNNNGG 3 cut(s) 23, 261, 1457
BseMI GCAATG 1 cut(s) 1743
BseMII CTCAG 4 cut(s) 66, 153, 410, 1077
BseNI ACTGG 3 cut(s) 507, 649, 1153
BseRI GAGGAG 8 cut(s) 346, 867, 1070, 1130, 1181, 1205, 1418, 1421
BseSI GKGCMC 1 cut(s) 623
BseX3I CGGCCG 3 cut(s) 240, 1009, 1459
Bsh1236I CGCG 1 cut(s) 1464
Bsh1285I CGRYCG 3 cut(s) 243, 1012, 1462
BshFI GGCC 6 cut(s) 242, 473, 1011, 1456, 1461, 1493
BshVI ATCGAT 1 cut(s) 432
BsiEI CGRYCG 3 cut(s) 243, 1012, 1462
BsiHKAI GWGCWC 6 cut(s) 321, 500, 593, 623, 997, 1049
BsiSI CCGG 4 cut(s) 89, 684, 934, 1458
BslFI GGGAC 2 cut(s) 950, 1166
BslI CCNNNNNNNGG 3 cut(s) 23, 261, 1457
BsmAI GTCTC 5 cut(s) 635, 681, 918, 1139, 1722
BsmBI CGTCTC 1 cut(s) 918
BsmFI GGGAC 2 cut(s) 950, 1166
BsmI GAATGC 1 cut(s) 1537
BsnI GGCC 6 cut(s) 242, 473, 1011, 1456, 1461, 1493
Bso31I GGTCTC 1 cut(s) 1722
Bsp1286I GDGCHC 6 cut(s) 321, 500, 593, 623, 997, 1049
Bsp1720I GCTNAGC 1 cut(s) 396
BspANI GGCC 6 cut(s) 242, 473, 1011, 1456, 1461, 1493
BspCNI CTCAG 4 cut(s) 67, 154, 409, 1076
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 1464
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 5 cut(s) 193, 425, 637, 1683, 1734
BspOI GCTAGC 1 cut(s) 1310
BspPI GGATC 7 cut(s) 182, 381, 630, 643, 670, 1626, 1680
BspQI GCTCTTC 2 cut(s) 1083, 1604
BspTNI GGTCTC 1 cut(s) 1722
BsrDI GCAATG 1 cut(s) 1743
BsrI ACTGG 3 cut(s) 507, 649, 1153
BssECI CCNNGG 3 cut(s) 474, 631, 1451
BssT1I CCWWGG 1 cut(s) 1451
Bst4CI ACNGT 2 cut(s) 237, 1297
Bst6I CTCTTC 6 cut(s) 121, 798, 921, 1083, 1604, 1725
BstAPI GCANNNNNTGC 1 cut(s) 1645
BstC8I GCNNGC 2 cut(s) 267, 1308
BstDEI CTNAG 8 cut(s) 8, 75, 98, 162, 396, 840, 1063, 1482
BstF5I GGATG 7 cut(s) 54, 523, 565, 1165, 1177, 1260, 1405
BstFNI CGCG 1 cut(s) 1464
BstHHI GCGC 1 cut(s) 1554
BstMAI GTCTC 5 cut(s) 635, 681, 918, 1139, 1722
BstMCI CGRYCG 3 cut(s) 243, 1012, 1462
BstMWI GCNNNNNNNGC 8 cut(s) 198, 627, 1008, 1502, 1511, 1520, 1558, 1645
BstNSI RCATGY 2 cut(s) 250, 800
BstSCI CCNGG 3 cut(s) 88, 933, 1456
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 1 cut(s) 1464
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BstZI CGGCCG 3 cut(s) 240, 1009, 1459
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 6 cut(s) 242, 473, 1011, 1456, 1461, 1493
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 7 cut(s) 54, 523, 565, 1165, 1177, 1260, 1405
BtsIMutI CAGTG 4 cut(s) 159, 233, 500, 621
Cac8I GCNNGC 2 cut(s) 267, 1308
CciI TCATGA 1 cut(s) 129
CfoI GCGC 1 cut(s) 1554
Cfr13I GGNCC 2 cut(s) 423, 1455
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 1 cut(s) 900
Csp6I GTAC 4 cut(s) 823, 1060, 1111, 1543
CviAII CATG 8 cut(s) 130, 139, 247, 292, 325, 797, 1606, 1678
CviQI GTAC 4 cut(s) 823, 1060, 1111, 1543
DdeI CTNAG 8 cut(s) 8, 75, 98, 162, 396, 840, 1063, 1482
DriI GACNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 4 cut(s) 240, 471, 1009, 1459
EagI CGGCCG 3 cut(s) 240, 1009, 1459
Eam1104I CTCTTC 6 cut(s) 121, 798, 921, 1083, 1604, 1725
Eam1105I GACNNNNNGTC 1 cut(s) 250
EarI CTCTTC 6 cut(s) 121, 798, 921, 1083, 1604, 1725
Ecl136II GAGCTC 4 cut(s) 319, 498, 591, 1047
EclXI CGGCCG 3 cut(s) 240, 1009, 1459
Eco130I CCWWGG 1 cut(s) 1451
Eco24I GRGCYC 4 cut(s) 321, 500, 593, 1049
Eco31I GGTCTC 1 cut(s) 1722
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 423
Eco52I CGGCCG 3 cut(s) 240, 1009, 1459
Eco53kI GAGCTC 4 cut(s) 319, 498, 591, 1047
Eco57I CTGAAG 3 cut(s) 660, 672, 1107
EcoICRI GAGCTC 4 cut(s) 319, 498, 591, 1047
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 1451
EcoT38I GRGCYC 4 cut(s) 321, 500, 593, 1049
ErhI CCWWGG 1 cut(s) 1451
Esp3I CGTCTC 1 cut(s) 918
FaeI CATG 8 cut(s) 133, 142, 250, 295, 328, 800, 1609, 1681
FaqI GGGAC 2 cut(s) 950, 1166
FatI CATG 8 cut(s) 129, 138, 246, 291, 324, 796, 1605, 1677
FauI CCCGC 2 cut(s) 1519, 1608
FbaI TGATCA 1 cut(s) 442
FokI GGATG 7 cut(s) 41, 530, 552, 1172, 1184, 1267, 1412
FriOI GRGCYC 4 cut(s) 321, 500, 593, 1049
FspBI CTAG 3 cut(s) 1307, 1433, 1710
GlaI GCGC 1 cut(s) 1553
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 6 cut(s) 242, 473, 1011, 1456, 1461, 1493
HapII CCGG 4 cut(s) 89, 684, 934, 1458
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 1554
Hin1II CATG 8 cut(s) 133, 142, 250, 295, 328, 800, 1609, 1681
Hin6I GCGC 1 cut(s) 1552
HinP1I GCGC 1 cut(s) 1552
HincII GTYRAC 2 cut(s) 1129, 1278
HindII GTYRAC 2 cut(s) 1129, 1278
HinfI GANTC 6 cut(s) 508, 544, 607, 928, 1233, 1348
HpaII CCGG 4 cut(s) 89, 684, 934, 1458
HphI GGTGA 4 cut(s) 172, 517, 923, 1300
Hpy166II GTNNAC 4 cut(s) 110, 621, 1129, 1278
Hpy188III TCNNGA 7 cut(s) 130, 437, 493, 548, 611, 764, 1755
Hpy8I GTNNAC 4 cut(s) 110, 621, 1129, 1278
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 6 cut(s) 385, 647, 681, 984, 1389, 1707
HpyCH4III ACNGT 2 cut(s) 237, 1297
HpyCH4V TGCA 4 cut(s) 305, 621, 1701, 1743
HpyF10VI GCNNNNNNNGC 8 cut(s) 198, 627, 1008, 1502, 1511, 1520, 1558, 1645
HpyF3I CTNAG 8 cut(s) 8, 75, 98, 162, 396, 840, 1063, 1482
Hsp92II CATG 8 cut(s) 133, 142, 250, 295, 328, 800, 1609, 1681
HspAI GCGC 1 cut(s) 1552
Ksp22I TGATCA 1 cut(s) 442
LguI GCTCTTC 2 cut(s) 1083, 1604
LmnI GCTCC 6 cut(s) 142, 197, 495, 521, 908, 1732
LweI GCATC 4 cut(s) 73, 75, 314, 960
MaeI CTAG 3 cut(s) 1307, 1433, 1710
MaeIII GTNAC 4 cut(s) 157, 178, 1288, 1485
MfeI CAATTG 2 cut(s) 1329, 1643
MflI RGATCY 1 cut(s) 635
MhlI GDGCHC 6 cut(s) 321, 500, 593, 623, 997, 1049
MluCI AATT 7 cut(s) 43, 482, 1103, 1121, 1248, 1329, 1643
MlyI GAGTC 3 cut(s) 616, 922, 1357
MmeI TCCRAC 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 6 cut(s) 81, 450, 705, 924, 1374, 1386
MslI CAYNNNNRTG 1 cut(s) 695
MspI CCGG 4 cut(s) 89, 684, 934, 1458
MspR9I CCNGG 3 cut(s) 90, 935, 1458
MunI CAATTG 2 cut(s) 1329, 1643
Mva1269I GAATGC 1 cut(s) 1537
MvnI CGCG 1 cut(s) 1464
MwoI GCNNNNNNNGC 8 cut(s) 198, 627, 1008, 1502, 1511, 1520, 1558, 1645
NciI CCSGG 3 cut(s) 90, 935, 1458
NheI GCTAGC 1 cut(s) 1306
NlaIII CATG 8 cut(s) 133, 142, 250, 295, 328, 800, 1609, 1681
NlaIV GGNNCC 5 cut(s) 193, 425, 637, 1683, 1734
NmeAIII GCCGAG 2 cut(s) 168, 499
NmuCI GTSAC 4 cut(s) 157, 178, 1288, 1485
NspI RCATGY 2 cut(s) 250, 800
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 2 cut(s) 1083, 1604
PcsI WCGNNNNNNNCGW 1 cut(s) 1161
PctI GAATGC 1 cut(s) 1537
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 508, 544, 1233
PflMI CCANNNNNTGG 1 cut(s) 261
PleI GAGTC 3 cut(s) 615, 922, 1356
PpsI GAGTC 3 cut(s) 615, 922, 1356
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 4 cut(s) 321, 500, 593, 1049
PspN4I GGNNCC 5 cut(s) 193, 425, 637, 1683, 1734
PspPI GGNCC 2 cut(s) 423, 1455
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 4 cut(s) 824, 1061, 1112, 1544
RsaNI GTAC 4 cut(s) 823, 1060, 1111, 1543
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 4 cut(s) 321, 500, 593, 1049
SapI GCTCTTC 2 cut(s) 1083, 1604
SaqAI TTAA 6 cut(s) 81, 450, 705, 924, 1374, 1386
Sau96I GGNCC 2 cut(s) 423, 1455
ScaI AGTACT 2 cut(s) 1061, 1544
SchI GAGTC 3 cut(s) 616, 922, 1357
ScrFI CCNGG 3 cut(s) 90, 935, 1458
SduI GDGCHC 6 cut(s) 321, 500, 593, 623, 997, 1049
SfaNI GCATC 4 cut(s) 73, 75, 314, 960
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 695
Sse9I AATT 7 cut(s) 43, 482, 1103, 1121, 1248, 1329, 1643
SspMI CTAG 3 cut(s) 1307, 1433, 1710
SstI GAGCTC 4 cut(s) 321, 500, 593, 1049
StyD4I CCNGG 3 cut(s) 88, 933, 1456
StyI CCWWGG 1 cut(s) 1451
TaaI ACNGT 2 cut(s) 237, 1297
TaqI TCGA 4 cut(s) 432, 587, 865, 968
TasI AATT 7 cut(s) 43, 482, 1103, 1121, 1248, 1329, 1643
TatI WGTACW 3 cut(s) 822, 1059, 1542
TauI GCSGC 6 cut(s) 745, 1014, 1464, 1496, 1517, 1520
TfiI GAWTC 3 cut(s) 508, 544, 1233
Tru1I TTAA 6 cut(s) 81, 450, 705, 924, 1374, 1386
Tru9I TTAA 6 cut(s) 81, 450, 705, 924, 1374, 1386
TscAI CASTG 4 cut(s) 166, 240, 507, 628
TseFI GTSAC 4 cut(s) 157, 178, 1288, 1485
Tsp45I GTSAC 4 cut(s) 157, 178, 1288, 1485
TspDTI ATGAA 9 cut(s) 118, 146, 308, 554, 1086, 1289, 1334, 1433, 1622
TspGWI ACGGA 1 cut(s) 980
TspRI CASTG 4 cut(s) 166, 240, 507, 628
Van91I CCANNNNNTGG 1 cut(s) 261
VneI GTGCAC 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 2 cut(s) 482, 1121
XceI RCATGY 2 cut(s) 250, 800
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 3 cut(s) 1307, 1433, 1710
ZrmI AGTACT 2 cut(s) 1061, 1544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.