Rw0G021280

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00978
OG0011046
Physical Location & Seq
Forward (+)
176862 .. 178536
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021280.1

Sequence Viewer

Length: 1644 bp
ATGCCGGGTTGTCTAAGCAAGAGTTTACACTCTTCTTCTCATTTCATGAAGAACATGGAGCAAGAAGCCAAAGTCATTGAGAAGCAGGGGATCGTCACCATTCTCGGCTCCGACTGCGAAAGAAACAAAGCAGCTTCTCTGCGACGAACACTGTCGGCCGACATGTCGTCCAAGAAATGGCTTGCTCAACAAGGTTTCTTCTCTCCCATGAAAAAGATTGCATCATCTAAAGAGCTCTCCATGTCCATAGCGGACAGCAACTCATCTTCCTCCTCTGATGAGGACGAGGATCATTTCCGAAACAGGAAGGCACAGCAACAGAAGATGTTCCATATATGGACCCCCATCGATCAAGATGATCAGATTAAGAAGACGAAGAAAGAGGTGGCCGAGGGAAAATTTGATATCTGGAGCTCACTGGTGAATCAAAAGGATGGAGCAGAAAACGAAGCAAACAAGATTCCAGAAGCACCTTATGTTCATCCTCTTGTTAAGAAACAATCGAGCTCTTTGAAAGGAAAGAGTCTTGAAGTGTGCACTGAAAGCCTCGGATCCGAGACTGGTTCTGAAGGCTTTGGATCATACCCTTCTTCAGAAACCGGAGACATAGAAGTGATTGAACAACCGCCGCAGCAACAACAAGAAGATCAAGAGAAACAAGTGAATACACAAGCAGTTTCACATGTGGAAGAGTTCCGAGTTGTCAAGTACAACTCTGCTGCTGCTAAGAAATCGGCTGCGGTGGTGGTTCGATCATTTCCTCCTCCTATCCCATCTTTATCGGGTTCTGATGGAGCGTCTCTTCGCATTAAGACTCACCGGGACAACGGGCGAGTAGTCCTTGAAGCCGTGTCGATGCCTTCTCCCAATAACTTCCGTGCTCAACGCCAAGACGGCCGCCTTGTCCTTACTTTTGTGAGTGCTACTCCGAGCTCTTTTGAGGAGTACTCAGAGAATGAAGAAGTGGTTGCTGAAGAGCAGAAAGAGGAATTAGAGTACGAGGAGAAATTTGTCAACTTTGCGGAAAGCGAGACTGGGGACGAGGATGACGAGGAGGATGAGGATAGAGAGAAAGAGGAGGAAGTTGAGGTTGAGAGAGTAGTAGGAAAAGAAAGTGGAATCAAGGAAATAGAAATTGGGATGGAGGAAGCACCAAAAATGTTGACGAGTAGGGTGACCACTGTTCATAGGTTAGCACTAATGATGAAAAAGCCAATTGGGTTGGCTAATAGGAGTCAAGGGTGGGCTGCTAACAAGTTTAATCAAGTAGTTAAGTATGGAAGGGATGAGGAGGAGGAAACAATGAAGCCAACCCCACTAGCACAATCACTTCCACCAAGGCCCGGCCGCGTGGCTCGGTTGATACCTAAGTCACAGGCCGCAGCAAAAGCAACACCCGCCGCCGCAGCTTCTTTGAATGCTTACGAGTACTATTGGCGCACCAAGCCCACAGCAGCACTCAACCCACTTTCCCAAGCAGCTTCCCCGCCCATGAAGAGCAAGGATCAAATGGCAAATCAGCAGCAACAATTGCTGGTTTTGAGAGGCAACAAAGGGGATCACATGGTTCCTTTGTCAAAGGGTTGCAAAGAGCCTAGAAGGTCTCTTCTATTCTGGGAGCCATACTGCATTGCCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

547

Amino Acids

60.91

Weight (kDa)

5.6

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 252 - 305 6.8e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 1350
AclWI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1512, 1566
AcoI YGGCCR 4 cut(s) 156, 387, 895, 1345
AcsI RAATTY 2 cut(s) 398, 1007
AcuI CTGAAG 3 cut(s) 576, 588, 993
AfaI GTAC 4 cut(s) 710, 947, 998, 1430
AfiI CCNNNNNNNGG 2 cut(s) 177, 1343
AflIII ACRYGT 2 cut(s) 162, 682
AgsI TTSAA 5 cut(s) 514, 530, 620, 845, 1417
AhdI GACNNNNNGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 1119, 1151
AluBI AGCT 7 cut(s) 134, 235, 414, 507, 933, 1409, 1481
AluI AGCT 7 cut(s) 134, 235, 414, 507, 933, 1409, 1481
Alw21I GWGCWC 6 cut(s) 237, 416, 509, 539, 883, 935
Alw26I GTCTC 5 cut(s) 551, 597, 804, 1025, 1608
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1512, 1566
AoxI GGCC 6 cut(s) 156, 387, 895, 1340, 1345, 1377
ApaLI GTGCAC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 398, 1007
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1440
AspS9I GGNCC 2 cut(s) 339, 1341
AsuC2I CCSGG 3 cut(s) 6, 821, 1344
AsuHPI GGTGA 4 cut(s) 88, 433, 809, 1186
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 1355, 1388
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 4 cut(s) 237, 416, 509, 935
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 6 cut(s) 237, 416, 509, 539, 883, 935
BccI CCATC 5 cut(s) 353, 428, 781, 785, 1135
BceAI ACGGC 2 cut(s) 833, 910
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 6, 821, 1344
BcoDI GTCTC 5 cut(s) 551, 597, 804, 1025, 1608
BfaI CTAG 2 cut(s) 1319, 1596
BglI GCCNNNNNGGC 1 cut(s) 894
BmcAI AGTACT 2 cut(s) 947, 1430
Bme1390I CCNGG 3 cut(s) 6, 821, 1344
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 339, 1341
BmiI GGNNCC 5 cut(s) 109, 341, 553, 1569, 1620
BmrFI CCNGG 3 cut(s) 6, 821, 1344
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 2 cut(s) 230, 846
BmuI ACTGGG 1 cut(s) 1044
BpiI GAAGAC 1 cut(s) 377
BplI GAGNNNNNCTC 4 cut(s) 910, 942, 932, 964
BpmI CTGGAG 1 cut(s) 430
BpuMI CCSGG 3 cut(s) 6, 821, 1344
Bsa29I ATCGAT 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 1608
BsaJI CCNNGG 3 cut(s) 390, 547, 1337
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1343
Bse1I ACTGG 3 cut(s) 423, 565, 1039
Bse3DI GCAATG 1 cut(s) 1629
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 390, 547, 1337
BseGI GGATG 6 cut(s) 439, 481, 1051, 1063, 1146, 1291
BseLI CCNNNNNNNGG 2 cut(s) 177, 1343
BseMI GCAATG 1 cut(s) 1629
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 3 cut(s) 423, 565, 1039
BseRI GAGGAG 8 cut(s) 262, 753, 956, 1016, 1067, 1091, 1304, 1307
BseSI GKGCMC 1 cut(s) 539
BseX3I CGGCCG 3 cut(s) 156, 895, 1345
Bsh1236I CGCG 1 cut(s) 1350
Bsh1285I CGRYCG 3 cut(s) 159, 898, 1348
BshFI GGCC 6 cut(s) 158, 389, 897, 1342, 1347, 1379
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 3 cut(s) 159, 898, 1348
BsiHKAI GWGCWC 6 cut(s) 237, 416, 509, 539, 883, 935
BsiSI CCGG 4 cut(s) 5, 600, 820, 1344
BslFI GGGAC 2 cut(s) 836, 1052
BslI CCNNNNNNNGG 2 cut(s) 177, 1343
BsmAI GTCTC 5 cut(s) 551, 597, 804, 1025, 1608
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 2 cut(s) 836, 1052
BsmI GAATGC 1 cut(s) 1423
BsnI GGCC 6 cut(s) 158, 389, 897, 1342, 1347, 1379
Bso31I GGTCTC 1 cut(s) 1608
Bsp1286I GDGCHC 6 cut(s) 237, 416, 509, 539, 883, 935
BspANI GGCC 6 cut(s) 158, 389, 897, 1342, 1347, 1379
BspCNI CTCAG 1 cut(s) 962
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 1 cut(s) 1350
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 5 cut(s) 109, 341, 553, 1569, 1620
BspPI GGATC 7 cut(s) 98, 297, 546, 559, 586, 1512, 1566
BspQI GCTCTTC 2 cut(s) 969, 1490
BspTNI GGTCTC 1 cut(s) 1608
BsrDI GCAATG 1 cut(s) 1629
BsrI ACTGG 3 cut(s) 423, 565, 1039
BssECI CCNNGG 3 cut(s) 390, 547, 1337
BssT1I CCWWGG 1 cut(s) 1337
Bst4CI ACNGT 2 cut(s) 153, 1183
Bst6I CTCTTC 6 cut(s) 37, 684, 807, 969, 1490, 1611
BstAPI GCANNNNNTGC 1 cut(s) 1531
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 4 cut(s) 14, 726, 949, 1368
BstEII GGTNACC 1 cut(s) 1174
BstF5I GGATG 6 cut(s) 439, 481, 1051, 1063, 1146, 1291
BstFNI CGCG 1 cut(s) 1350
BstHHI GCGC 1 cut(s) 1440
BstMAI GTCTC 5 cut(s) 551, 597, 804, 1025, 1608
BstMCI CGRYCG 3 cut(s) 159, 898, 1348
BstMWI GCNNNNNNNGC 8 cut(s) 114, 543, 894, 1388, 1397, 1406, 1444, 1531
BstNSI RCATGY 2 cut(s) 166, 686
BstPI GGTNACC 1 cut(s) 1174
BstSCI CCNGG 3 cut(s) 4, 819, 1342
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 1350
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 3 cut(s) 156, 895, 1345
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 6 cut(s) 158, 389, 897, 1342, 1347, 1379
BsuTUI ATCGAT 1 cut(s) 348
BtsCI GGATG 6 cut(s) 439, 481, 1051, 1063, 1146, 1291
BtsIMutI CAGTG 4 cut(s) 149, 416, 537, 1179
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1440
Cfr13I GGNCC 2 cut(s) 339, 1341
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 786
Csp6I GTAC 4 cut(s) 709, 946, 997, 1429
CviAII CATG 8 cut(s) 46, 55, 163, 208, 241, 683, 1492, 1564
CviQI GTAC 4 cut(s) 709, 946, 997, 1429
DdeI CTNAG 4 cut(s) 14, 726, 949, 1368
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 4 cut(s) 156, 387, 895, 1345
EagI CGGCCG 3 cut(s) 156, 895, 1345
Eam1104I CTCTTC 6 cut(s) 37, 684, 807, 969, 1490, 1611
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 6 cut(s) 37, 684, 807, 969, 1490, 1611
Ecl136II GAGCTC 4 cut(s) 235, 414, 507, 933
EclXI CGGCCG 3 cut(s) 156, 895, 1345
Eco130I CCWWGG 1 cut(s) 1337
Eco24I GRGCYC 4 cut(s) 237, 416, 509, 935
Eco31I GGTCTC 1 cut(s) 1608
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 339
Eco52I CGGCCG 3 cut(s) 156, 895, 1345
Eco53kI GAGCTC 4 cut(s) 235, 414, 507, 933
Eco57I CTGAAG 3 cut(s) 576, 588, 993
Eco91I GGTNACC 1 cut(s) 1174
EcoICRI GAGCTC 4 cut(s) 235, 414, 507, 933
EcoO65I GGTNACC 1 cut(s) 1174
EcoRV GATATC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 1337
EcoT38I GRGCYC 4 cut(s) 237, 416, 509, 935
ErhI CCWWGG 1 cut(s) 1337
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 8 cut(s) 49, 58, 166, 211, 244, 686, 1495, 1567
FaqI GGGAC 2 cut(s) 836, 1052
FatI CATG 8 cut(s) 45, 54, 162, 207, 240, 682, 1491, 1563
FauI CCCGC 2 cut(s) 1405, 1494
FbaI TGATCA 1 cut(s) 358
FokI GGATG 6 cut(s) 446, 468, 1058, 1070, 1153, 1298
FriOI GRGCYC 4 cut(s) 237, 416, 509, 935
FspBI CTAG 2 cut(s) 1319, 1596
GlaI GCGC 1 cut(s) 1439
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 6 cut(s) 158, 389, 897, 1342, 1347, 1379
HapII CCGG 4 cut(s) 5, 600, 820, 1344
HgaI GACGC 1 cut(s) 786
HhaI GCGC 1 cut(s) 1440
Hin1II CATG 8 cut(s) 49, 58, 166, 211, 244, 686, 1495, 1567
Hin6I GCGC 1 cut(s) 1438
HinP1I GCGC 1 cut(s) 1438
HincII GTYRAC 2 cut(s) 1015, 1164
HindII GTYRAC 2 cut(s) 1015, 1164
HinfI GANTC 6 cut(s) 424, 460, 523, 814, 1119, 1234
HpaII CCGG 4 cut(s) 5, 600, 820, 1344
HphI GGTGA 4 cut(s) 88, 433, 809, 1186
Hpy166II GTNNAC 4 cut(s) 26, 537, 1015, 1164
Hpy188III TCNNGA 7 cut(s) 46, 353, 409, 464, 527, 650, 1641
Hpy8I GTNNAC 4 cut(s) 26, 537, 1015, 1164
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 6 cut(s) 301, 563, 597, 870, 1275, 1593
HpyCH4III ACNGT 2 cut(s) 153, 1183
HpyCH4V TGCA 4 cut(s) 221, 537, 1587, 1629
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 543, 894, 1388, 1397, 1406, 1444, 1531
HpyF3I CTNAG 4 cut(s) 14, 726, 949, 1368
Hsp92II CATG 8 cut(s) 49, 58, 166, 211, 244, 686, 1495, 1567
HspAI GCGC 1 cut(s) 1438
Ksp22I TGATCA 1 cut(s) 358
LguI GCTCTTC 2 cut(s) 969, 1490
LmnI GCTCC 6 cut(s) 58, 113, 411, 437, 794, 1618
LweI GCATC 2 cut(s) 230, 846
MaeI CTAG 2 cut(s) 1319, 1596
MaeIII GTNAC 3 cut(s) 94, 1174, 1371
MfeI CAATTG 2 cut(s) 1215, 1529
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 6 cut(s) 237, 416, 509, 539, 883, 935
MluCI AATT 6 cut(s) 398, 989, 1007, 1134, 1215, 1529
MlyI GAGTC 3 cut(s) 532, 808, 1243
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 5 cut(s) 366, 492, 810, 1260, 1272
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 4 cut(s) 5, 600, 820, 1344
MspR9I CCNGG 3 cut(s) 6, 821, 1344
MunI CAATTG 2 cut(s) 1215, 1529
Mva1269I GAATGC 1 cut(s) 1423
MvnI CGCG 1 cut(s) 1350
MwoI GCNNNNNNNGC 8 cut(s) 114, 543, 894, 1388, 1397, 1406, 1444, 1531
NciI CCSGG 3 cut(s) 6, 821, 1344
NlaIII CATG 8 cut(s) 49, 58, 166, 211, 244, 686, 1495, 1567
NlaIV GGNNCC 5 cut(s) 109, 341, 553, 1569, 1620
NmeAIII GCCGAG 2 cut(s) 84, 415
NmuCI GTSAC 3 cut(s) 94, 1174, 1371
NspI RCATGY 2 cut(s) 166, 686
PagI TCATGA 1 cut(s) 45
PciI ACATGT 2 cut(s) 162, 682
PciSI GCTCTTC 2 cut(s) 969, 1490
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PctI GAATGC 1 cut(s) 1423
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 424, 460, 1119
PflMI CCANNNNNTGG 1 cut(s) 177
PleI GAGTC 3 cut(s) 531, 808, 1242
PpsI GAGTC 3 cut(s) 531, 808, 1242
PscI ACATGT 2 cut(s) 162, 682
Psp124BI GAGCTC 4 cut(s) 237, 416, 509, 935
PspEI GGTNACC 1 cut(s) 1174
PspN4I GGNNCC 5 cut(s) 109, 341, 553, 1569, 1620
PspPI GGNCC 2 cut(s) 339, 1341
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 4 cut(s) 710, 947, 998, 1430
RsaNI GTAC 4 cut(s) 709, 946, 997, 1429
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 4 cut(s) 237, 416, 509, 935
SapI GCTCTTC 2 cut(s) 969, 1490
SaqAI TTAA 5 cut(s) 366, 492, 810, 1260, 1272
Sau96I GGNCC 2 cut(s) 339, 1341
ScaI AGTACT 2 cut(s) 947, 1430
SchI GAGTC 3 cut(s) 532, 808, 1243
ScrFI CCNGG 3 cut(s) 6, 821, 1344
SduI GDGCHC 6 cut(s) 237, 416, 509, 539, 883, 935
SfaNI GCATC 2 cut(s) 230, 846
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 6 cut(s) 398, 989, 1007, 1134, 1215, 1529
SspMI CTAG 2 cut(s) 1319, 1596
SstI GAGCTC 4 cut(s) 237, 416, 509, 935
StyD4I CCNGG 3 cut(s) 4, 819, 1342
StyI CCWWGG 1 cut(s) 1337
TaaI ACNGT 2 cut(s) 153, 1183
TaqI TCGA 4 cut(s) 348, 503, 751, 854
TasI AATT 6 cut(s) 398, 989, 1007, 1134, 1215, 1529
TatI WGTACW 3 cut(s) 708, 945, 1428
TauI GCSGC 6 cut(s) 631, 900, 1350, 1382, 1403, 1406
TfiI GAWTC 3 cut(s) 424, 460, 1119
Tru1I TTAA 5 cut(s) 366, 492, 810, 1260, 1272
Tru9I TTAA 5 cut(s) 366, 492, 810, 1260, 1272
TscAI CASTG 4 cut(s) 156, 423, 544, 1186
TseFI GTSAC 3 cut(s) 94, 1174, 1371
Tsp45I GTSAC 3 cut(s) 94, 1174, 1371
TspDTI ATGAA 9 cut(s) 34, 62, 224, 470, 972, 1175, 1220, 1319, 1508
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 4 cut(s) 156, 423, 544, 1186
Van91I CCANNNNNTGG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 2 cut(s) 398, 1007
XceI RCATGY 2 cut(s) 166, 686
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 1319, 1596
ZrmI AGTACT 2 cut(s) 947, 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.