Rroxscaffold_1G00033180

Protein FAF-like, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
47782356 .. 47784636
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033180.1

Sequence Viewer

Length: 1680 bp
ATGCCGGGTTGTCTAAGCAAGAGTTTACACTCTTCTTCTCATTTCATGAAGAACATGGAGCAAGAAGCCAAAGTCACTGAGAAGCAGGGGATCGTCACCATTCTCGGCTCCGACTGCGAAAGAAACAAAGCAGCTTCTCTGCGACGAACACTGTCGGCCGATATGTCGTCCAAGAAATGGCTTGCTCAACAAGGTTTCTTCTGTCCCATGAAAAAGATTGCATCATCTAAAGAGCTCTCCATGTCCATAGCGGACAGCAACTCATCTTCCTCCTCCGATGACGACGAGGATCATTTCCGAAACAGGAAGGCTCAGCAACAGAAGATGTTCCATATATGGACCCCCATCGATCAAGATGATCAGATTAAGAAGATGAAGAAGAAAGAGATGGCCGAGGGAAAATTTGATATCTGGAGCTCACTGGTGAATCAAAAGGATGGAGCAGAAAACGAAGCAAACAAGATTCCAGAAGCACCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGCTCTTTGAAAGGAAAGAGTCTTGAAGTGTGCACTGAAAGCCTCGGATCCGAAACTGGTTCTGAAGGCTTTGGATCATACCCTTCTTCAGAAACCGGAGACATAGACGTGGTCATTAAAGAGGAAGAACAAGTGGCAGAGATTGAACAACCGCAGCAACAACAAGAAGATCAAGAGAAACAAGTGAATACACAAGCAGTTTCGCATGTGGAAGAGTTCCGAGTTGTCAAGTACAACTCTGCTGCTGTTGCTCCTGCTAAGAAATCGGCTGCGGTGGTGGTTCGATCATTTCCTCCTCCTATCCCATCTTTATCGGGTACTGATGGAGCGTCTCTTCGCATTAAGACTCACCGGGACAACGGGCGAGTAGTCCTTGAAGCCGTGTCGATGCCTTCTACCAATAACTTCCGTGCTCAACGCCAAGACGGCCGCCTTGTCCTCACTTTTGTGAGTGCTACTCCGAGCTCTTTTGAGGAGTACTCAGAGGATGAAGAAGTGGTTGCTGAAGAGCAGAAAGAGGAATTAGAGTACGAGGAGAAATTTGTCAACTTTGCGGAAAGCGAGACTGAGGACGAGGATGACGAGGAAGATGAGGATAGAGAGAAGGAGGAGGAAGTTGAGGAGAGAGTAGTAGGAAAAGAAAGTGGAATCAAGGAAATAGAAATTGGGATGGAGGAAGCACCAAAAATGTTGACAAGTAGGGTGACAACTGTTCATAGGCTAGCACTAATGATGAAAAAGCCAATTGGGTTGGCTAATAGGAGTCAAGGGTGGGCTGCTAACAAGTTTAATCAAGTAGTTAAGTATGGAGGGGATGAGGAGGAGGAAACAATGAAGCCAACCCCACTAGCACAATCACTTCCACCACGGCCCGGCCGCGTGGCTCGGTTGATACCTAAGTCACAGGCCACAGCGACAGCAGCACCCGCCGCCGCAGCTTCTTTGAATGCTTACGAGTACTATTGGCGCACCAAGCCCACAGCAGCACTCAACCCACTTTCCCAAGCAGCTTCCCCGCCCATGAAGAGCAAGGACCAAATGGCAAATCAGCAGCAACAATTGCTGGTTTTGAGAGGCAACAAAGGGGATCACATGGTTCCTTTGTCAAAGGGTTGCAAAGAGCCTAGAAGGTCTCTTCTATTCTGGGAGCCATACTGCATTGCCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

559

Amino Acids

62.26

Weight (kDa)

5.29

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 265 - 318 1.2e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011046)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 1386
AclWI GGATC 6 cut(s) 98, 297, 549, 562, 589, 1602
AcoI YGGCCR 4 cut(s) 156, 390, 934, 1381
AcsI RAATTY 2 cut(s) 401, 1046
AcuI CTGAAG 3 cut(s) 579, 591, 1032
AfaI GTAC 5 cut(s) 740, 826, 986, 1037, 1466
AfiI CCNNNNNNNGG 2 cut(s) 177, 1379
AgsI TTSAA 5 cut(s) 517, 533, 653, 884, 1453
AjiI CACGTC 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 1155, 1187
AleI CACNNNNGTG 1 cut(s) 953
AluBI AGCT 7 cut(s) 134, 235, 417, 510, 972, 1445, 1517
AluI AGCT 7 cut(s) 134, 235, 417, 510, 972, 1445, 1517
Alw21I GWGCWC 6 cut(s) 237, 419, 512, 542, 922, 974
Alw26I GTCTC 4 cut(s) 600, 843, 1064, 1644
Alw44I GTGCAC 1 cut(s) 538
AlwI GGATC 6 cut(s) 98, 297, 549, 562, 589, 1602
AoxI GGCC 6 cut(s) 156, 390, 934, 1376, 1381, 1413
ApaLI GTGCAC 1 cut(s) 538
ApoI RAATTY 2 cut(s) 401, 1046
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1476
AspS9I GGNCC 3 cut(s) 339, 1377, 1540
AsuC2I CCSGG 3 cut(s) 6, 860, 1380
AsuHPI GGTGA 4 cut(s) 88, 436, 848, 1222
AsuNHI GCTAGC 1 cut(s) 1228
AvaII GGWCC 2 cut(s) 339, 1540
BaeGI GKGCMC 1 cut(s) 542
BaeI ACNNNNGTAYC 2 cut(s) 1391, 1424
BamHI GGATCC 1 cut(s) 554
BanII GRGCYC 4 cut(s) 237, 419, 512, 974
Bbv12I GWGCWC 6 cut(s) 237, 419, 512, 542, 922, 974
BccI CCATC 6 cut(s) 353, 382, 431, 820, 824, 1171
BceAI ACGGC 3 cut(s) 872, 949, 1391
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 6, 860, 1380
BcoDI GTCTC 4 cut(s) 600, 843, 1064, 1644
BfaI CTAG 3 cut(s) 1229, 1355, 1632
BglI GCCNNNNNGGC 1 cut(s) 933
BlpI GCTNAGC 1 cut(s) 312
BmcAI AGTACT 2 cut(s) 986, 1466
Bme1390I CCNGG 3 cut(s) 6, 860, 1380
Bme18I GGWCC 2 cut(s) 339, 1540
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 3 cut(s) 339, 1377, 1540
BmiI GGNNCC 5 cut(s) 109, 341, 556, 1605, 1656
BmrFI CCNGG 3 cut(s) 6, 860, 1380
BmsI GCATC 2 cut(s) 230, 885
BmtI GCTAGC 1 cut(s) 1232
BplI GAGNNNNNCTC 4 cut(s) 949, 981, 971, 1003
BpmI CTGGAG 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 312
BpuMI CCSGG 3 cut(s) 6, 860, 1380
Bsa29I ATCGAT 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 1644
BsaJI CCNNGG 3 cut(s) 393, 550, 1373
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1379
Bse1I ACTGG 2 cut(s) 426, 568
Bse3DI GCAATG 1 cut(s) 1665
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 393, 550, 1373
BseGI GGATG 6 cut(s) 442, 484, 1000, 1090, 1182, 1327
BseLI CCNNNNNNNGG 2 cut(s) 177, 1379
BseMI GCAATG 1 cut(s) 1665
BseMII CTCAG 4 cut(s) 69, 326, 1002, 1065
BseNI ACTGG 2 cut(s) 426, 568
BseRI GAGGAG 8 cut(s) 262, 792, 995, 1055, 1130, 1142, 1340, 1343
BseSI GKGCMC 1 cut(s) 542
BseX3I CGGCCG 3 cut(s) 156, 934, 1381
Bsh1236I CGCG 1 cut(s) 1386
Bsh1285I CGRYCG 3 cut(s) 159, 937, 1384
BshFI GGCC 6 cut(s) 158, 392, 936, 1378, 1383, 1415
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 3 cut(s) 159, 937, 1384
BsiHKAI GWGCWC 6 cut(s) 237, 419, 512, 542, 922, 974
BsiSI CCGG 4 cut(s) 5, 603, 859, 1380
BslFI GGGAC 2 cut(s) 189, 875
BslI CCNNNNNNNGG 2 cut(s) 177, 1379
BsmAI GTCTC 4 cut(s) 600, 843, 1064, 1644
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 2 cut(s) 189, 875
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 6 cut(s) 158, 392, 936, 1378, 1383, 1415
Bso31I GGTCTC 1 cut(s) 1644
Bsp1286I GDGCHC 6 cut(s) 237, 419, 512, 542, 922, 974
Bsp143I GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
Bsp1720I GCTNAGC 1 cut(s) 312
BspANI GGCC 6 cut(s) 158, 392, 936, 1378, 1383, 1415
BspCNI CTCAG 4 cut(s) 70, 325, 1001, 1066
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 1 cut(s) 1386
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 5 cut(s) 109, 341, 556, 1605, 1656
BspOI GCTAGC 1 cut(s) 1232
BspPI GGATC 6 cut(s) 98, 297, 549, 562, 589, 1602
BspQI GCTCTTC 2 cut(s) 1008, 1526
BspTNI GGTCTC 1 cut(s) 1644
BsrDI GCAATG 1 cut(s) 1665
BsrI ACTGG 2 cut(s) 426, 568
BssECI CCNNGG 3 cut(s) 393, 550, 1373
BssMI GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
Bst4CI ACNGT 2 cut(s) 153, 1219
Bst6I CTCTTC 6 cut(s) 37, 714, 846, 1008, 1526, 1647
BstAPI GCANNNNNTGC 1 cut(s) 1567
BstC8I GCNNGC 2 cut(s) 183, 1230
BstDEI CTNAG 7 cut(s) 14, 78, 312, 765, 988, 1074, 1404
BstDSI CCRYGG 1 cut(s) 1373
BstF5I GGATG 6 cut(s) 442, 484, 1000, 1090, 1182, 1327
BstFNI CGCG 1 cut(s) 1386
BstHHI GCGC 1 cut(s) 1476
BstKTI GATC 9 cut(s) 93, 292, 352, 361, 557, 584, 679, 794, 1597
BstMAI GTCTC 4 cut(s) 600, 843, 1064, 1644
BstMBI GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
BstMCI CGRYCG 3 cut(s) 159, 937, 1384
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 4, 858, 1378
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 1 cut(s) 1386
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BstZI CGGCCG 3 cut(s) 156, 934, 1381
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 6 cut(s) 158, 392, 936, 1378, 1383, 1415
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 1373
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 6 cut(s) 442, 484, 1000, 1090, 1182, 1327
BtsIMutI CAGTG 4 cut(s) 75, 149, 419, 540
Cac8I GCNNGC 2 cut(s) 183, 1230
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1476
Cfr13I GGNCC 3 cut(s) 339, 1377, 1540
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 825
Csp6I GTAC 5 cut(s) 739, 825, 985, 1036, 1465
CviAII CATG 7 cut(s) 46, 55, 208, 241, 713, 1528, 1600
CviQI GTAC 5 cut(s) 739, 825, 985, 1036, 1465
DdeI CTNAG 7 cut(s) 14, 78, 312, 765, 988, 1074, 1404
DpnI GATC 9 cut(s) 92, 291, 351, 360, 556, 583, 678, 793, 1596
DpnII GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
EaeI YGGCCR 4 cut(s) 156, 390, 934, 1381
EagI CGGCCG 3 cut(s) 156, 934, 1381
Eam1104I CTCTTC 6 cut(s) 37, 714, 846, 1008, 1526, 1647
EarI CTCTTC 6 cut(s) 37, 714, 846, 1008, 1526, 1647
Ecl136II GAGCTC 4 cut(s) 235, 417, 510, 972
EclXI CGGCCG 3 cut(s) 156, 934, 1381
Eco24I GRGCYC 4 cut(s) 237, 419, 512, 974
Eco31I GGTCTC 1 cut(s) 1644
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 339, 1540
Eco52I CGGCCG 3 cut(s) 156, 934, 1381
Eco53kI GAGCTC 4 cut(s) 235, 417, 510, 972
Eco57I CTGAAG 3 cut(s) 579, 591, 1032
EcoICRI GAGCTC 4 cut(s) 235, 417, 510, 972
EcoRV GATATC 1 cut(s) 409
EcoT38I GRGCYC 4 cut(s) 237, 419, 512, 974
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 7 cut(s) 49, 58, 211, 244, 716, 1531, 1603
FaqI GGGAC 2 cut(s) 189, 875
FatI CATG 7 cut(s) 45, 54, 207, 240, 712, 1527, 1599
FauI CCCGC 2 cut(s) 1441, 1530
FbaI TGATCA 1 cut(s) 358
FokI GGATG 6 cut(s) 449, 471, 1007, 1097, 1189, 1334
FriOI GRGCYC 4 cut(s) 237, 419, 512, 974
FspBI CTAG 3 cut(s) 1229, 1355, 1632
GlaI GCGC 1 cut(s) 1475
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 6 cut(s) 158, 392, 936, 1378, 1383, 1415
HapII CCGG 4 cut(s) 5, 603, 859, 1380
HgaI GACGC 1 cut(s) 825
HhaI GCGC 1 cut(s) 1476
Hin1II CATG 7 cut(s) 49, 58, 211, 244, 716, 1531, 1603
Hin6I GCGC 1 cut(s) 1474
HinP1I GCGC 1 cut(s) 1474
HincII GTYRAC 2 cut(s) 1054, 1200
HindII GTYRAC 2 cut(s) 1054, 1200
HinfI GANTC 6 cut(s) 427, 463, 526, 853, 1155, 1270
HpaII CCGG 4 cut(s) 5, 603, 859, 1380
HphI GGTGA 4 cut(s) 88, 436, 848, 1222
Hpy166II GTNNAC 4 cut(s) 26, 540, 1054, 1200
Hpy188III TCNNGA 7 cut(s) 46, 353, 412, 467, 530, 680, 1677
Hpy8I GTNNAC 4 cut(s) 26, 540, 1054, 1200
Hpy99I CGWCG 2 cut(s) 147, 287
HpyAV CCTTC 6 cut(s) 301, 566, 600, 909, 1105, 1629
HpyCH4III ACNGT 2 cut(s) 153, 1219
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 4 cut(s) 221, 540, 1623, 1665
HpyF3I CTNAG 7 cut(s) 14, 78, 312, 765, 988, 1074, 1404
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 7 cut(s) 49, 58, 211, 244, 716, 1531, 1603
HspAI GCGC 1 cut(s) 1474
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
LguI GCTCTTC 2 cut(s) 1008, 1526
LmnI GCTCC 7 cut(s) 58, 113, 414, 440, 763, 833, 1654
LweI GCATC 2 cut(s) 230, 885
MaeI CTAG 3 cut(s) 1229, 1355, 1632
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 4 cut(s) 73, 94, 1210, 1407
MalI GATC 9 cut(s) 92, 291, 351, 360, 556, 583, 678, 793, 1596
MboI GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
MfeI CAATTG 2 cut(s) 1251, 1565
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 6 cut(s) 237, 419, 512, 542, 922, 974
MluCI AATT 6 cut(s) 401, 1028, 1046, 1170, 1251, 1565
MlyI GAGTC 3 cut(s) 535, 847, 1279
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 5 cut(s) 366, 624, 849, 1296, 1308
MslI CAYNNNNRTG 2 cut(s) 614, 953
MspI CCGG 4 cut(s) 5, 603, 859, 1380
MspR9I CCNGG 3 cut(s) 6, 860, 1380
MunI CAATTG 2 cut(s) 1251, 1565
Mva1269I GAATGC 1 cut(s) 1459
MvnI CGCG 1 cut(s) 1386
NciI CCSGG 3 cut(s) 6, 860, 1380
NdeII GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
NheI GCTAGC 1 cut(s) 1228
NlaIII CATG 7 cut(s) 49, 58, 211, 244, 716, 1531, 1603
NlaIV GGNNCC 5 cut(s) 109, 341, 556, 1605, 1656
NmeAIII GCCGAG 2 cut(s) 84, 418
NmuCI GTSAC 4 cut(s) 73, 94, 1210, 1407
NspI RCATGY 1 cut(s) 716
OliI CACNNNNGTG 1 cut(s) 953
PagI TCATGA 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 1008, 1526
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 1 cut(s) 1459
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 427, 463, 1155
PflFI GACNNNGTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 177
PleI GAGTC 3 cut(s) 534, 847, 1278
PpsI GAGTC 3 cut(s) 534, 847, 1278
Psp124BI GAGCTC 4 cut(s) 237, 419, 512, 974
PspN4I GGNNCC 5 cut(s) 109, 341, 556, 1605, 1656
PspPI GGNCC 3 cut(s) 339, 1377, 1540
PsuI RGATCY 1 cut(s) 554
PsyI GACNNNGTC 1 cut(s) 617
RsaI GTAC 5 cut(s) 740, 826, 986, 1037, 1466
RsaNI GTAC 5 cut(s) 739, 825, 985, 1036, 1465
RseI CAYNNNNRTG 2 cut(s) 614, 953
SacI GAGCTC 4 cut(s) 237, 419, 512, 974
SapI GCTCTTC 2 cut(s) 1008, 1526
SaqAI TTAA 5 cut(s) 366, 624, 849, 1296, 1308
Sau3AI GATC 9 cut(s) 90, 289, 349, 358, 554, 581, 676, 791, 1594
Sau96I GGNCC 3 cut(s) 339, 1377, 1540
ScaI AGTACT 2 cut(s) 986, 1466
SchI GAGTC 3 cut(s) 535, 847, 1279
ScrFI CCNGG 3 cut(s) 6, 860, 1380
SduI GDGCHC 6 cut(s) 237, 419, 512, 542, 922, 974
SfaNI GCATC 2 cut(s) 230, 885
SinI GGWCC 2 cut(s) 339, 1540
SmiMI CAYNNNNRTG 2 cut(s) 614, 953
Sse9I AATT 6 cut(s) 401, 1028, 1046, 1170, 1251, 1565
SspMI CTAG 3 cut(s) 1229, 1355, 1632
SstI GAGCTC 4 cut(s) 237, 419, 512, 974
StyD4I CCNGG 3 cut(s) 4, 858, 1378
TaaI ACNGT 2 cut(s) 153, 1219
TaiI ACGT 1 cut(s) 618
TaqI TCGA 4 cut(s) 348, 506, 790, 893
TasI AATT 6 cut(s) 401, 1028, 1046, 1170, 1251, 1565
TatI WGTACW 3 cut(s) 738, 984, 1464
TauI GCSGC 4 cut(s) 939, 1386, 1439, 1442
TfiI GAWTC 3 cut(s) 427, 463, 1155
Tru1I TTAA 5 cut(s) 366, 624, 849, 1296, 1308
Tru9I TTAA 5 cut(s) 366, 624, 849, 1296, 1308
TscAI CASTG 4 cut(s) 82, 156, 426, 547
TseFI GTSAC 4 cut(s) 73, 94, 1210, 1407
Tsp45I GTSAC 4 cut(s) 73, 94, 1210, 1407
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 4 cut(s) 82, 156, 426, 547
Tth111I GACNNNGTC 1 cut(s) 617
Van91I CCANNNNNTGG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 2 cut(s) 339, 1540
XapI RAATTY 2 cut(s) 401, 1046
XceI RCATGY 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 1229, 1355, 1632
ZrmI AGTACT 2 cut(s) 986, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.