Rorug05G0240100

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011046
Physical Location & Seq
Forward (+)
25492784 .. 25494284
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0240100.1

Sequence Viewer

Length: 1029 bp
ATGGCTTTTCAACGCATTAACCTTGTGTTTATTGCCATATTCATTACCTTGGGGACTTTGGCTTCTCATGCCACATCCCGTTCATTGTATGAAGCTTCCCTTGCTGAAAAACATGAGCAATGGATGGCAAAGCACGGACGCGTTTACCCCAATGCCACAGAGAAGAAAAGGCGTTTCGACATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGCGAATAAGACTTACAAGTTGAACATCAACAAGTTTTCTGATATGACCGACGAAGAATTCCGGAGATATCATACCGGATTCAAAATGCCCCCCGGCTTAAATTCAACGTCATCCAATTTTAGCTACCAAAGCTTGGCTGCTACTGATATTCCAACTAGCGTGGACTGGAGGGACCAACAAGCTGTCACCTCCATAAAGAATCAAAAAACATGCGGTGCTTGCTGGGCATTTACAGTAGCAGCAGCTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCGCTCTCCGAGCAGCAACTTGTGGACTGCGATCATCAGAACCATGGGTGCGGCGGTGGTAACTTAGAATACGCCTATTCCTACGTAAAGGAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCGTACCAGGGAACAGACATGGGAACATGCGATACTAACAAGGAAAGTGAGCGTGCGGCACAGATCACTGGCTATGAAAGCGTCCCTTCCAGCAGTGAAAACGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGGTTGGCATAGAAGCTTATGGACAAGATTTTAAGATGTACGGCAGTGGGGTGTTCTCCGGCGAATGTGGGACGGACCTCGACCACGCCATCACGGCCATTGGCTATGGGACGACTGAAGATGGAATCCCCTATTGGTTAATGAAGAACTCATGGGGGGAGGATTGGGGTGAAAGTGGGTATTTGAAGATTCTTAGAAACAGTGATGCCCCAGAGGGTATGTGCGGCCTTGCTATGCATCCCGTCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

342

Amino Acids

38.01

Weight (kDa)

5.36

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 7.1e-20 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 125 - 341 1.1e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 5 cut(s) 438, 561, 564, 689, 993
AcoI YGGCCR 3 cut(s) 499, 753, 864
AcsI RAATTY 2 cut(s) 281, 325
AcuI CTGAAG 2 cut(s) 169, 906
AfaI GTAC 2 cut(s) 638, 809
AfiI CCNNNNNNNGG 3 cut(s) 358, 640, 641
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 6 cut(s) 11, 217, 247, 307, 330, 955
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 886, 918
AluBI AGCT 6 cut(s) 95, 348, 357, 407, 470, 785
AluI AGCT 6 cut(s) 95, 348, 357, 407, 470, 785
AlwNI CAGNNNCTG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 499, 753, 864, 994
ApeKI GCWGC 4 cut(s) 362, 464, 467, 523
ApoI RAATTY 2 cut(s) 281, 325
AspS9I GGNCC 2 cut(s) 397, 844
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 403, 950
AvaII GGWCC 2 cut(s) 397, 844
BalI TGGCCA 1 cut(s) 755
BauI CACGAG 1 cut(s) 618
BbvI GCAGC 4 cut(s) 349, 476, 479, 535
BccI CCATC 3 cut(s) 118, 866, 884
BceAI ACGGC 2 cut(s) 826, 879
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 318
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 740
BglI GCCNNNNNGGC 1 cut(s) 863
BisI GCNGC 7 cut(s) 363, 465, 468, 524, 562, 690, 994
BlsI GCNGC 7 cut(s) 364, 466, 469, 525, 563, 691, 995
Bme1390I CCNGG 2 cut(s) 318, 641
Bme18I GGWCC 2 cut(s) 397, 844
BmgT120I GGNCC 2 cut(s) 397, 844
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 318, 641
BmsI GCATC 2 cut(s) 964, 1015
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 318
BsaAI YACGTR 2 cut(s) 205, 595
BsaJI CCNNGG 4 cut(s) 48, 316, 553, 640
BsaWI WCCGGW 2 cut(s) 285, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 358, 640, 641
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 3 cut(s) 395, 706, 764
Bse3DI GCAATG 1 cut(s) 125
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 4 cut(s) 48, 316, 553, 640
BseGI GGATG 4 cut(s) 74, 129, 335, 1006
BseLI CCNNNNNNNGG 3 cut(s) 358, 640, 641
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 3 cut(s) 395, 706, 764
BseXI GCAGC 4 cut(s) 349, 476, 479, 535
BseYI CCCAGC 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 501, 755, 866, 996
BsiSI CCGG 5 cut(s) 286, 300, 318, 498, 828
BslFI GGGAC 5 cut(s) 67, 410, 701, 853, 892
BslI CCNNNNNNNGG 3 cut(s) 358, 640, 641
BsmFI GGGAC 5 cut(s) 67, 410, 701, 853, 892
BsnI GGCC 4 cut(s) 501, 755, 866, 996
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 507, 541, 696, 736
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 5 cut(s) 438, 561, 564, 689, 993
BspANI GGCC 4 cut(s) 501, 755, 866, 996
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 3 cut(s) 395, 706, 764
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 4 cut(s) 48, 316, 553, 640
BssMI GATC 4 cut(s) 507, 541, 696, 736
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 48, 553
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 460, 971
BstBAI YACGTR 2 cut(s) 205, 595
BstC8I GCNNGC 2 cut(s) 445, 687
BstDEI CTNAG 2 cut(s) 574, 962
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 4 cut(s) 74, 129, 335, 1006
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 4 cut(s) 510, 544, 699, 739
BstMBI GATC 4 cut(s) 507, 541, 696, 736
BstMWI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 444, 449, 520, 711, 863
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 438, 663
BstSCI CCNGG 2 cut(s) 316, 639
BstSFI CTRYAG 1 cut(s) 740
BstSNI TACGTA 1 cut(s) 595
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 349, 476, 479, 535
BsuRI GGCC 4 cut(s) 501, 755, 866, 996
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 4 cut(s) 74, 129, 335, 1006
BtsI GCAGTG 2 cut(s) 733, 820
BtsIMutI CAGTG 4 cut(s) 699, 733, 820, 976
Cac8I GCNNGC 2 cut(s) 445, 687
CaiI CAGNNNCTG 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 397, 844
CseI GACGC 2 cut(s) 147, 703
Csp6I GTAC 2 cut(s) 637, 808
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 8 cut(s) 68, 113, 435, 554, 652, 660, 757, 921
CviQI GTAC 2 cut(s) 637, 808
DdeI CTNAG 2 cut(s) 574, 962
DpnI GATC 4 cut(s) 509, 543, 698, 738
DpnII GATC 4 cut(s) 507, 541, 696, 736
EaeI YGGCCR 3 cut(s) 499, 753, 864
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 48, 553
Eco32I GATATC 1 cut(s) 293
Eco47I GGWCC 2 cut(s) 397, 844
Eco57I CTGAAG 2 cut(s) 169, 906
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 2 cut(s) 48, 553
EcoT22I ATGCAT 1 cut(s) 1008
ErhI CCWWGG 2 cut(s) 48, 553
FaeI CATG 8 cut(s) 71, 116, 438, 557, 655, 663, 760, 924
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 703, 735
FaqI GGGAC 5 cut(s) 67, 410, 701, 853, 892
FatI CATG 8 cut(s) 67, 112, 434, 553, 651, 659, 756, 920
Fnu4HI GCNGC 7 cut(s) 363, 465, 468, 524, 562, 690, 994
FokI GGATG 4 cut(s) 61, 136, 322, 993
Fsp4HI GCNGC 7 cut(s) 363, 465, 468, 524, 562, 690, 994
FspBI CTAG 1 cut(s) 381
GluI GCNGC 7 cut(s) 363, 465, 468, 524, 562, 690, 994
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 4 cut(s) 501, 755, 866, 996
HapII CCGG 5 cut(s) 286, 300, 318, 498, 828
HgaI GACGC 2 cut(s) 147, 703
Hin1II CATG 8 cut(s) 71, 116, 438, 557, 655, 663, 760, 924
HindIII AAGCTT 3 cut(s) 93, 355, 783
HinfI GANTC 5 cut(s) 303, 424, 612, 894, 958
HpaII CCGG 5 cut(s) 286, 300, 318, 498, 828
HphI GGTGA 2 cut(s) 403, 950
Hpy166II GTNNAC 3 cut(s) 145, 388, 535
Hpy188I TCNGA 4 cut(s) 265, 520, 549, 1020
Hpy188III TCNNGA 3 cut(s) 187, 286, 620
Hpy8I GTNNAC 3 cut(s) 145, 388, 535
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 470, 729, 739
HpyCH4III ACNGT 2 cut(s) 460, 971
HpyCH4IV ACGT 3 cut(s) 204, 332, 594
HpyCH4V TGCA 3 cut(s) 760, 1006, 1025
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 444, 449, 520, 711, 863
HpyF3I CTNAG 2 cut(s) 574, 962
HpySE526I ACGT 3 cut(s) 204, 332, 594
Hsp92II CATG 8 cut(s) 71, 116, 438, 557, 655, 663, 760, 924
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 507, 541, 696, 736
Lsp1109I GCAGC 4 cut(s) 349, 476, 479, 535
LweI GCATC 2 cut(s) 964, 1015
MaeI CTAG 1 cut(s) 381
MaeII ACGT 3 cut(s) 204, 332, 594
MaeIII GTNAC 2 cut(s) 409, 569
MalI GATC 4 cut(s) 509, 543, 698, 738
MboI GATC 4 cut(s) 507, 541, 696, 736
MboII GAAGA 8 cut(s) 175, 175, 202, 290, 635, 899, 925, 967
MfeI CAATTG 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 281, 325, 340, 503
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 387, 424, 602, 857, 922, 976
Mox20I TGGCCA 1 cut(s) 755
Mph1103I ATGCAT 1 cut(s) 1008
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 18, 323, 801, 908
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 5 cut(s) 286, 300, 318, 498, 828
MspR9I CCNGG 2 cut(s) 318, 641
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 8 cut(s) 68, 101, 354, 444, 449, 520, 711, 863
NciI CCSGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 553
NdeII GATC 4 cut(s) 507, 541, 696, 736
NlaIII CATG 8 cut(s) 71, 116, 438, 557, 655, 663, 760, 924
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 1008
NspI RCATGY 2 cut(s) 438, 663
PfeI GAWTC 4 cut(s) 303, 424, 894, 958
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 7 cut(s) 364, 466, 469, 525, 563, 691, 995
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
Ppu21I YACGTR 2 cut(s) 205, 595
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 397, 844
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 638, 809
RsaNI GTAC 2 cut(s) 637, 808
SaqAI TTAA 4 cut(s) 18, 323, 801, 908
SatI GCNGC 7 cut(s) 363, 465, 468, 524, 562, 690, 994
Sau3AI GATC 4 cut(s) 507, 541, 696, 736
Sau96I GGNCC 2 cut(s) 397, 844
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 318, 641
SfaNI GCATC 2 cut(s) 964, 1015
SfcI CTRYAG 1 cut(s) 740
SinI GGWCC 2 cut(s) 397, 844
SnaBI TACGTA 1 cut(s) 595
Sse9I AATT 4 cut(s) 281, 325, 340, 503
SsiI CCGC 5 cut(s) 438, 561, 564, 689, 993
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 316, 639
StyI CCWWGG 2 cut(s) 48, 553
TaaI ACNGT 2 cut(s) 460, 971
TaiI ACGT 3 cut(s) 207, 335, 597
TaqI TCGA 3 cut(s) 177, 198, 849
TaqII GACCGA 1 cut(s) 287
TasI AATT 4 cut(s) 281, 325, 340, 503
TauI GCSGC 3 cut(s) 564, 692, 996
TfiI GAWTC 4 cut(s) 303, 424, 894, 958
Tru1I TTAA 4 cut(s) 18, 323, 801, 908
Tru9I TTAA 4 cut(s) 18, 323, 801, 908
TscAI CASTG 4 cut(s) 706, 733, 820, 976
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 362, 464, 467, 523
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 6 cut(s) 31, 72, 105, 237, 723, 926
TspGWI ACGGA 3 cut(s) 150, 621, 857
TspRI CASTG 4 cut(s) 706, 733, 820, 976
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 397, 844
XapI RAATTY 2 cut(s) 281, 325
XceI RCATGY 2 cut(s) 438, 663
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.