pycom03g11030

Protein FAF-like, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011046
Physical Location & Seq
Forward (+)
10601662 .. 10603335
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11030.1

Sequence Viewer

Length: 1674 bp
ATGGGTTCTCTCAGCAAAAGCCTAACTAGCTCGCCATCTTCTCATTTCATGAAGAAGAATATGGAGCAAGAAGTGGTCACTGAGAAGCGAGGGATCGTCACCATTCTCGGCCCGTCCGACTCTGAAAGAACCAAAGCCGCTTCCTTGCGACGAACACTGTCCGCGGACATGTCGTCCAAAAGATGGCTGTCTCAACACGGCTTCTCTCCCATGAAGAAGATTGCGTCATCCGAAGAACTCTGTGTCTCCGTAAACATTCGGGACGACTCATCTTCATCGTCCGAAGATGTAGATCATTACCAAGATCAAGGCAAGGCCAAATTCCATATTTGGAGCTCAATTGATGAGCAAGCTCAGAAGCAAAAAAACAAAGCCGAGGCTGCAAAGCAGCAGCCGGGACAAGCCGATCTTTGGAGCTCGATTGTATGTCAAAAGGCCAACGAAGAAGAGGCGAGCAAAGCGGCACCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGTTCTTTGACAAAAAAGAGTCTTGAAGTCTGCACTGAAAGTCTCGGATCCGAGACTGGCTCTGAAGGGTTTGCTTCATACCCTACTTCGGAGACCGGTGACGTAGAAATAGTGGAGAACGATCCGGAAGAAGAGCAAGCCGCAGTTCAACAACAAGAAGAAGAAAAAGAGAAGCCTCAGCTGTCACAAGCATTTGATGGGAATGAATTTCAGGTTGTCAAGTACAACTCTTCTGCTAGTAAGAAATTGCCTTCCGTTCGATCTTTCCCTCCACCTCTTCCGTCTTTATCAGGATATGACGGGGAATCTGTTTGCATGAGGACTCATCGCGACAATGGGCGACTAGTCCTTGAAGCGGTGTCTATGCCTTCCCTGAACAACTTCCGTGCTCAACGCCAAGATGGTCGCCTTGTCCTCACATTTCTCAATGCTACTTCGAGCTCTTGCGAGGTGCCTAACTGTGAAGAGGTTGCTAATGAAGAAGAGAAGACTAGAGAGCTAGAATTTGATGAAAATGTGAACTTTGAGGAAGGAGAGAAGGAAAAAGAAAGCGAAAAAAGTGATGGTGATGATGTTGATGAGGATGAGGAAGAAAGTGATGAGGTTGAGAAAGCAAGAAAAGAAAATGGAATCAGAAGAATAGAAATTGTGATGGAGGAAGCACCAAGAATACTAACAAGTAGAGTGACAAATGTTCACAGGTTAGCACTAATGATGAATAAGCCAATTGGGTTAGACAATAAGGCTCATGGGTGGACTAACAAGTTCAATGAAGTAGTGAAATATGGAGCGGTTGAAGAGGAGGTCGAAGTGGTTGATCCAACCCCAATTTCAAGGTCACTCCCTCCACTGCCTGGTCGTGTGGCTCGTATGATACCTAAGCCACCGGCCACCACAAAAACAGCAGCAGCAGCAACCTCTTTCAACGCTTACGAGTACCATTGGCGCACCAATCGCACAACAACTGCCGCTCTCAAACCTCTTCCGCCGCCAATGTCGCAGTCCCTCAAAAGTAATGGCTTTATGTCCCAGAATCAGTTGGCAAATGAGCAGCAACAATTGCTGGTTTTGAGAGGGAACAAGGGGGATCAATTGGTTCCTTTTTCAAAGGGTTGCAAAGAGCCTAGAATAAGATCTCTTCTATTTTGGGATCCTTATTGCATTGCCACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

558

Amino Acids

62.0

Weight (kDa)

5.23

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 254 - 307 5.2e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22090 AT5G22090
fragaria_vesca FvH4_3g26310 FvH4_3g26310
malus_domestica MD03G1156200.v1.1 MD11G1173900.v1.1
prunus_persica Prupe.6G145500_v2.0.a1
pyrus_communis pycom03g11030 pycom11g14840
rosa_chinensis RchiOBHm_Chr5g0048601
rosa_laevigata RLG00000034542
rosa_multiflora Rmu_co8499011.1_g000001
rosa_roxburghii Rroxscaffold_1G00033180
rosa_rugosa Rorug05G0240100
rosa_samantha Rh5AG319600 Rh5BG329800 Rh5CG355800 Rh5DG341000
rosa_wichuraiana Rw0G021280 Rw5G029890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 463, 949
AccB7I CCANNNNNTGG 2 cut(s) 183, 1352
AccBSI CCGCTC 2 cut(s) 1289, 1469
AccII CGCG 2 cut(s) 164, 828
AccIII TCCGGA 1 cut(s) 622
AclWI GGATC 8 cut(s) 101, 540, 553, 614, 1310, 1593, 1643, 1656
AcoI YGGCCR 1 cut(s) 1386
AcsI RAATTY 3 cut(s) 320, 704, 1001
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 722, 1436
AfiI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1352
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 593
AgsI TTSAA 8 cut(s) 524, 647, 851, 1267, 1295, 1332, 1423, 1605
AhdI GACNNNNNGTC 1 cut(s) 172
AhlI ACTAGT 1 cut(s) 841
AjnI CCWGG 1 cut(s) 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 1312, 1344
AluBI AGCT 7 cut(s) 30, 336, 353, 417, 679, 939, 997
AluI AGCT 7 cut(s) 30, 336, 353, 417, 679, 939, 997
Alw21I GWGCWC 4 cut(s) 338, 419, 889, 941
Alw26I GTCTC 5 cut(s) 195, 250, 545, 545, 584
AlwI GGATC 8 cut(s) 101, 540, 553, 614, 1310, 1593, 1643, 1656
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 4 cut(s) 109, 315, 435, 1386
ApeKI GCWGC 7 cut(s) 380, 388, 391, 1403, 1406, 1409, 1549
ApoI RAATTY 3 cut(s) 320, 704, 1001
AsiGI ACCGGT 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 878
AspLEI GCGC 1 cut(s) 1446
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 3 cut(s) 91, 608, 1076
BamHI GGATCC 2 cut(s) 545, 1648
BanI GGYRCC 2 cut(s) 463, 949
BanII GRGCYC 3 cut(s) 338, 419, 941
BbsI GAAGAC 1 cut(s) 992
Bbv12I GWGCWC 4 cut(s) 338, 419, 889, 941
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 7 cut(s) 367, 400, 403, 1415, 1418, 1421, 1561
BccI CCATC 6 cut(s) 43, 177, 689, 893, 1055, 1144
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 1353
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 5 cut(s) 195, 250, 545, 545, 584
BcuI ACTAGT 1 cut(s) 841
BfaI CTAG 6 cut(s) 27, 735, 842, 990, 998, 1623
BglII AGATCT 1 cut(s) 1631
Bme1390I CCNGG 2 cut(s) 396, 1353
BmeRI GACNNNNNGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 5 cut(s) 465, 547, 951, 1596, 1650
BmrFI CCNGG 2 cut(s) 396, 1353
BpiI GAAGAC 1 cut(s) 992
BplI GAGNNNNNCTC 2 cut(s) 542, 574
Bpu10I CCTNAGC 2 cut(s) 675, 1377
BpuMI CCSGG 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 162, 375
BsaWI WCCGGW 2 cut(s) 593, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1352
Bse118I RCCGGY 2 cut(s) 593, 1384
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 1659
Bse8I GATNNNNATC 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 1 cut(s) 1353
BseDI CCNNGG 2 cut(s) 162, 375
BseGI GGATG 3 cut(s) 227, 475, 1087
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1352
BseMI GCAATG 1 cut(s) 1659
BseMII CTCAG 4 cut(s) 25, 72, 368, 689
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 1313
BseXI GCAGC 7 cut(s) 367, 400, 403, 1415, 1418, 1421, 1561
BsgI GTGCAG 1 cut(s) 514
Bsh1236I CGCG 2 cut(s) 164, 828
BshFI GGCC 4 cut(s) 111, 317, 437, 1388
BshNI GGYRCC 2 cut(s) 463, 949
BshTI ACCGGT 1 cut(s) 593
BsiHKAI GWGCWC 4 cut(s) 338, 419, 889, 941
BsiSI CCGG 4 cut(s) 395, 594, 623, 1385
BslFI GGGAC 4 cut(s) 275, 411, 1486, 1510
BslI CCNNNNNNNGG 5 cut(s) 183, 411, 586, 853, 1352
BsmAI GTCTC 5 cut(s) 195, 250, 545, 545, 584
BsmFI GGGAC 4 cut(s) 275, 411, 1486, 1510
BsnI GGCC 4 cut(s) 111, 317, 437, 1388
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 4 cut(s) 338, 419, 889, 941
Bsp13I TCCGGA 1 cut(s) 622
Bsp68I TCGCGA 1 cut(s) 828
BspANI GGCC 4 cut(s) 111, 317, 437, 1388
BspCNI CTCAG 4 cut(s) 24, 73, 367, 688
BspEI TCCGGA 1 cut(s) 622
BspFNI CGCG 2 cut(s) 164, 828
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 5 cut(s) 465, 547, 951, 1596, 1650
BspPI GGATC 8 cut(s) 101, 540, 553, 614, 1310, 1593, 1643, 1656
BspQI GCTCTTC 1 cut(s) 624
BspT107I GGYRCC 2 cut(s) 463, 949
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 2 cut(s) 1289, 1469
BsrDI GCAATG 1 cut(s) 1659
BsrFI RCCGGY 2 cut(s) 593, 1384
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 2 cut(s) 593, 1384
BssECI CCNNGG 2 cut(s) 162, 375
Bst2UI CCWGG 1 cut(s) 1353
Bst4CI ACNGT 2 cut(s) 159, 959
Bst6I CTCTTC 9 cut(s) 441, 624, 733, 780, 957, 975, 1290, 1485, 1641
BstAPI GCANNNNNTGC 1 cut(s) 1558
BstC8I GCNNGC 4 cut(s) 32, 351, 454, 636
BstDEI CTNAG 5 cut(s) 11, 81, 354, 675, 1377
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 227, 475, 1087
BstFNI CGCG 2 cut(s) 164, 828
BstHHI GCGC 1 cut(s) 1446
BstMAI GTCTC 5 cut(s) 195, 250, 545, 545, 584
BstMWI GCNNNNNNNGC 7 cut(s) 27, 380, 458, 1409, 1452, 1495, 1558
BstNI CCWGG 1 cut(s) 1353
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 394, 1351
BstUI CGCG 2 cut(s) 164, 828
BstV1I GCAGC 7 cut(s) 367, 400, 403, 1415, 1418, 1421, 1561
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 3 cut(s) 545, 1631, 1648
BstYI RGATCY 3 cut(s) 545, 1631, 1648
BsuRI GGCC 4 cut(s) 111, 317, 437, 1388
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 809
BtsCI GGATG 3 cut(s) 227, 475, 1087
BtsI GCAGTG 1 cut(s) 1346
BtsIMutI CAGTG 4 cut(s) 78, 155, 531, 1346
BtuMI TCGCGA 1 cut(s) 828
Cac8I GCNNGC 4 cut(s) 32, 351, 454, 636
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 1446
Cfr10I RCCGGY 2 cut(s) 593, 1384
Cfr13I GGNCC 1 cut(s) 110
Cfr42I CCGCGG 1 cut(s) 165
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 721, 1435
CspAI ACCGGT 1 cut(s) 593
CviAII CATG 5 cut(s) 49, 169, 211, 814, 1247
CviQI GTAC 2 cut(s) 721, 1435
DdeI CTNAG 5 cut(s) 11, 81, 354, 675, 1377
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 1386
Eam1104I CTCTTC 9 cut(s) 441, 624, 733, 780, 957, 975, 1290, 1485, 1641
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 9 cut(s) 441, 624, 733, 780, 957, 975, 1290, 1485, 1641
EciI GGCGGA 1 cut(s) 1473
Ecl136II GAGCTC 3 cut(s) 336, 417, 939
Eco24I GRGCYC 3 cut(s) 338, 419, 941
Eco31I GGTCTC 1 cut(s) 584
Eco53kI GAGCTC 3 cut(s) 336, 417, 939
Eco57I CTGAAG 1 cut(s) 582
EcoICRI GAGCTC 3 cut(s) 336, 417, 939
EcoRII CCWGG 1 cut(s) 1351
EcoT38I GRGCYC 3 cut(s) 338, 419, 941
FaeI CATG 5 cut(s) 52, 172, 214, 817, 1250
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 4 cut(s) 275, 411, 1486, 1510
FatI CATG 5 cut(s) 48, 168, 210, 813, 1246
FokI GGATG 3 cut(s) 214, 462, 1094
FriOI GRGCYC 3 cut(s) 338, 419, 941
FspBI CTAG 6 cut(s) 27, 735, 842, 990, 998, 1623
GlaI GCGC 1 cut(s) 1445
HaeIII GGCC 4 cut(s) 111, 317, 437, 1388
HapII CCGG 4 cut(s) 395, 594, 623, 1385
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 1446
Hin1II CATG 5 cut(s) 52, 172, 214, 817, 1250
Hin6I GCGC 1 cut(s) 1444
HinP1I GCGC 1 cut(s) 1444
HinfI GANTC 7 cut(s) 119, 266, 517, 803, 820, 1128, 1531
HpaII CCGG 4 cut(s) 395, 594, 623, 1385
HphI GGTGA 3 cut(s) 91, 608, 1076
Hpy166II GTNNAC 4 cut(s) 253, 1018, 1195, 1254
Hpy188III TCNNGA 7 cut(s) 49, 260, 521, 623, 789, 827, 1671
Hpy8I GTNNAC 4 cut(s) 253, 1018, 1195, 1254
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 5 cut(s) 557, 759, 876, 1022, 1030
HpyCH4III ACNGT 2 cut(s) 159, 959
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 5 cut(s) 383, 531, 813, 1614, 1659
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 380, 458, 1409, 1452, 1495, 1558
HpyF3I CTNAG 5 cut(s) 11, 81, 354, 675, 1377
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 5 cut(s) 52, 172, 214, 817, 1250
HspAI GCGC 1 cut(s) 1444
Kpn2I TCCGGA 1 cut(s) 622
KspI CCGCGG 1 cut(s) 165
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 4 cut(s) 64, 333, 414, 1286
Lsp1109I GCAGC 7 cut(s) 367, 400, 403, 1415, 1418, 1421, 1561
MaeI CTAG 6 cut(s) 27, 735, 842, 990, 998, 1623
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 6 cut(s) 76, 97, 596, 681, 1183, 1335
MbiI CCGCTC 2 cut(s) 1289, 1469
MfeI CAATTG 4 cut(s) 339, 1224, 1556, 1589
MflI RGATCY 3 cut(s) 545, 1631, 1648
MhlI GDGCHC 4 cut(s) 338, 419, 889, 941
MlyI GAGTC 4 cut(s) 113, 260, 526, 814
MmeI TCCRAC 2 cut(s) 141, 1343
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 878
MspA1I CMGCKG 2 cut(s) 164, 679
MspI CCGG 4 cut(s) 395, 594, 623, 1385
MspR9I CCNGG 2 cut(s) 396, 1353
MunI CAATTG 4 cut(s) 339, 1224, 1556, 1589
MvaI CCWGG 1 cut(s) 1353
MvnI CGCG 2 cut(s) 164, 828
MwoI GCNNNNNNNGC 7 cut(s) 27, 380, 458, 1409, 1452, 1495, 1558
NciI CCSGG 1 cut(s) 396
NlaIII CATG 5 cut(s) 52, 172, 214, 817, 1250
NlaIV GGNNCC 5 cut(s) 465, 547, 951, 1596, 1650
NmeAIII GCCGAG 2 cut(s) 87, 400
NmuCI GTSAC 6 cut(s) 76, 97, 596, 681, 1183, 1335
NruI TCGCGA 1 cut(s) 828
NspI RCATGY 1 cut(s) 172
PagI TCATGA 1 cut(s) 48
PciI ACATGT 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 1363
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 3 cut(s) 803, 1128, 1531
PflMI CCANNNNNTGG 2 cut(s) 183, 1352
PinAI ACCGGT 1 cut(s) 593
PleI GAGTC 4 cut(s) 113, 260, 525, 814
PpsI GAGTC 4 cut(s) 113, 260, 525, 814
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 3 cut(s) 338, 419, 941
Psp6I CCWGG 1 cut(s) 1351
PspGI CCWGG 1 cut(s) 1351
PspN4I GGNNCC 5 cut(s) 465, 547, 951, 1596, 1650
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 3 cut(s) 545, 1631, 1648
PvuII CAGCTG 1 cut(s) 679
RruI TCGCGA 1 cut(s) 828
RsaI GTAC 2 cut(s) 722, 1436
RsaNI GTAC 2 cut(s) 721, 1435
SacI GAGCTC 3 cut(s) 338, 419, 941
SacII CCGCGG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 624
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 4 cut(s) 113, 260, 526, 814
ScrFI CCNGG 2 cut(s) 396, 1353
SduI GDGCHC 4 cut(s) 338, 419, 889, 941
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SpeI ACTAGT 1 cut(s) 841
SspMI CTAG 6 cut(s) 27, 735, 842, 990, 998, 1623
SstI GAGCTC 3 cut(s) 338, 419, 941
StyD4I CCNGG 2 cut(s) 394, 1351
TaaI ACNGT 2 cut(s) 159, 959
TaiI ACGT 1 cut(s) 603
TaqI TCGA 5 cut(s) 419, 497, 757, 935, 1305
TatI WGTACW 1 cut(s) 720
TauI GCSGC 5 cut(s) 140, 464, 641, 1469, 1489
TfiI GAWTC 3 cut(s) 803, 1128, 1531
TscAI CASTG 4 cut(s) 85, 162, 538, 1353
TseFI GTSAC 6 cut(s) 76, 97, 596, 681, 1183, 1335
TseI GCWGC 7 cut(s) 380, 388, 391, 1403, 1406, 1409, 1549
Tsp45I GTSAC 6 cut(s) 76, 97, 596, 681, 1183, 1335
TspGWI ACGGA 4 cut(s) 238, 742, 768, 872
TspRI CASTG 4 cut(s) 85, 162, 538, 1353
Van91I CCANNNNNTGG 2 cut(s) 183, 1352
XapI RAATTY 3 cut(s) 320, 704, 1001
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 6 cut(s) 27, 735, 842, 990, 998, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.