Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007650

Physical Location & Seq

Genomic Coordinates Reverse (-)

19308178 .. 19309418

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1160700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGGGACAAAGGTGAGTGGGTGCCGAGCAGAGCTCAGGGTGGCAATTTCGTAAGTTACTTGCCCCAGGATGAGGCGGTGGCGGCTGGGCTCGGCGCCGACGAAGGCGTATTGGACGCCCTGGAGTCGCAGAGAGTGGTGGATCTTCTTAATAGAGAGCTCTCTCGCCTGCTGAAGTTAAACCCTAAGGAGTTTTTTGGCGACAACGCCAAGGAATTGGTGGCGGGGGTCATTGTTAGGGAGTTTGAATTGAGCCGCCGTCTGTTCATGGTATTATATCGAATATCTTCTAATAGGGATCCTGGCGCTCGTCATGCTGATAGTCTCAGTCCACAAGACCATGAAGTTCTTTTGCAGGAGATGAAGTTGCTTGACTTGCCTAAGTTGTTAGACATATATGCTATATATGGTCATGAAAATGAAGATTTGACCAGAGTGCTGGTTGGCAATGCAGTAAAAGTTCATACTAGGATCCGTGACAATTTGACTGCAGTAGCATCACATTTCCTTAGCATTGTCCAAACAATGTACCAACGTAGTAGCTCAGCCTTGGAGACCCTTTTTTCCTCTGGAAACACTGGAGAACATGGATCCAGCCGTCTTCTTGCTGATTTATTGGAAGTTATGGACTTCATCAACGATGCAATTGTATCCATGGATGCTTTCTTAACTGCATACGAACCATCTGCTGTCTTCTTGTTGTGCCCTGTTGAAACCAGTCATGGGAACGAGGCATTACTAAGCATTCTAGCAAGGTTGCATGATTCATTACTTCCATCTTTGCAGCATGGATTTCAAATAATTTCAGCAGATGGAGAAGATAAAATGGTGTCTAAATATTGCTTTAAGTTGAAGATGTTATCAAAGAGAATTGTCAGATTCGGTTGGAAACTATTGGATTTGTGCTATCTAAGTGATGAGGCCTTCAAAGATAACCTCCCCATTCCAGCTGCTGCGGAGATGTTTCCAGCCAAAGTGGAGGATCTTTTCATTAGATCAGATATACTGGTTCAAACTTTAAGAGAGATTAATGGAATTTCCGTATGTGCTCAGGAGAACCAGAATAGGCAAACATTTCTTCAAAATATTGAAAAGAACTTCAACATTATGAGCAAAATGGAGAATTTACAAAAGAGTGGATGGATAAATCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

386

Amino Acids

43.14

Weight (kDa)

5.3

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27752 AT1G27752
fragaria_vesca	FvH4_2g33210 FvH4_2g33210 FvH4_2g33210 FvH4_2g33210
malus_domestica	MD03G1160700.v1.1 MD08G1085900.v1.1 MD15G1071100.v1.1
prunus_persica	Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1
pyrus_communis	pycom08g07060 pycom15g06690
rosa_chinensis	RchiOBHm_Chr6g0309461
rosa_laevigata	RLG00000013072
rosa_multiflora	Rmu_sc0014034.1_g000003
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485300 Rh6BG494600 Rh6CG499600 Rh6DG485700
rosa_wichuraiana	Rw6G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 95
AciI	CCGC	5 cut(s)	77, 83, 224, 256, 956
AclWI	GGATC	8 cut(s)	150, 293, 306, 466, 479, 585, 598, 990
AcsI	RAATTY	2 cut(s)	1035, 1123
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	2 cut(s)	96, 117
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	73, 723
AgsI	TTSAA	9 cut(s)	248, 713, 797, 853, 928, 1013, 1082, 1091, 1102
AjnI	CCWGG	3 cut(s)	66, 120, 301
AluBI	AGCT	4 cut(s)	35, 160, 543, 950
AluI	AGCT	4 cut(s)	35, 160, 543, 950
Alw21I	GWGCWC	3 cut(s)	37, 162, 1051
Alw26I	GTCTC	2 cut(s)	329, 548
AlwI	GGATC	8 cut(s)	150, 293, 306, 466, 479, 585, 598, 990
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	784, 950, 953
ApoI	RAATTY	2 cut(s)	1035, 1123
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	98, 308
AsuHPI	GGTGA	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	707
BamHI	GGATCC	3 cut(s)	298, 471, 590
BanI	GGYRCC	2 cut(s)	22, 95
BanII	GRGCYC	3 cut(s)	37, 93, 162
BbsI	GAAGAC	2 cut(s)	593, 685
Bbv12I	GWGCWC	3 cut(s)	37, 162, 1051
BbvI	GCAGC	3 cut(s)	796, 937, 940
BccI	CCATC	4 cut(s)	691, 784, 806, 1134
BceAI	ACGGC	2 cut(s)	243, 582
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	3 cut(s)	68, 122, 303
BciVI	GTATCC	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	329, 548
BfaI	CTAG	2 cut(s)	468, 749
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	2 cut(s)	99, 309
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	84, 256, 785, 951, 954
BlpI	GCTNAGC	1 cut(s)	544
BlsI	GCNGC	5 cut(s)	85, 257, 786, 952, 955
Bme1390I	CCNGG	3 cut(s)	68, 122, 303
BmiI	GGNNCC	5 cut(s)	24, 97, 300, 473, 592
BmrFI	CCNGG	3 cut(s)	68, 122, 303
BmsI	GCATC	3 cut(s)	506, 631, 649
BpiI	GAAGAC	2 cut(s)	593, 685
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	2 cut(s)	143, 600
Bpu10I	CCTNAGC	3 cut(s)	36, 509, 1050
Bpu1102I	GCTNAGC	1 cut(s)	544
BsaHI	GRCGYC	2 cut(s)	96, 117
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	5 cut(s)	66, 120, 210, 549, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 723
Bse1I	ACTGG	3 cut(s)	583, 717, 1011
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	3 cut(s)	68, 122, 303
BseDI	CCNNGG	5 cut(s)	66, 120, 210, 549, 654
BseGI	GGATG	3 cut(s)	76, 664, 1145
BseLI	CCNNNNNNNGG	2 cut(s)	73, 723
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	4 cut(s)	50, 340, 558, 1064
BseNI	ACTGG	3 cut(s)	583, 717, 1011
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	3 cut(s)	796, 937, 940
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	923
BshNI	GGYRCC	2 cut(s)	22, 95
BsiHKAI	GWGCWC	3 cut(s)	37, 162, 1051
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	73, 723
BsmAI	GTCTC	2 cut(s)	329, 548
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	1 cut(s)	923
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	5 cut(s)	37, 93, 162, 707, 1051
Bsp143I	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
Bsp1720I	GCTNAGC	1 cut(s)	544
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	5 cut(s)	77, 83, 224, 256, 956
BspANI	GGCC	1 cut(s)	923
BspCNI	CTCAG	4 cut(s)	49, 339, 557, 1063
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	5 cut(s)	24, 97, 300, 473, 592
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	8 cut(s)	150, 293, 306, 466, 479, 585, 598, 990
BspT107I	GGYRCC	2 cut(s)	22, 95
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	583, 717, 1011
BssECI	CCNNGG	5 cut(s)	66, 120, 210, 549, 654
BssMI	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
BssNI	GRCGYC	2 cut(s)	96, 117
BssT1I	CCWWGG	3 cut(s)	210, 549, 654
Bst2UI	CCWGG	3 cut(s)	68, 122, 303
BstACI	GRCGYC	2 cut(s)	96, 117
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	9 cut(s)	36, 186, 326, 381, 509, 544, 740, 911, 1050
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	3 cut(s)	76, 664, 1145
BstH2I	RGCGCY	2 cut(s)	99, 309
BstHHI	GCGC	2 cut(s)	98, 308
BstKTI	GATC	6 cut(s)	145, 301, 474, 593, 985, 998
BstMAI	GTCTC	2 cut(s)	329, 548
BstMBI	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 314, 376
BstNI	CCWGG	3 cut(s)	68, 122, 303
BstSCI	CCNGG	3 cut(s)	66, 120, 301
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	3 cut(s)	796, 937, 940
BstV2I	GAAGAC	2 cut(s)	593, 685
BstX2I	RGATCY	5 cut(s)	142, 298, 471, 590, 982
BstXI	CCANNNNNNTGG	2 cut(s)	217, 439
BstYI	RGATCY	5 cut(s)	142, 298, 471, 590, 982
Bsu36I	CCTNAGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	923
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	76, 664, 1145
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	170
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	98, 308
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	529
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	9 cut(s)	36, 186, 326, 381, 509, 544, 740, 911, 1050
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	6 cut(s)	144, 300, 473, 592, 984, 997
DpnII	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
Ecl136II	GAGCTC	2 cut(s)	35, 160
Eco130I	CCWWGG	3 cut(s)	210, 549, 654
Eco147I	AGGCCT	1 cut(s)	923
Eco24I	GRGCYC	3 cut(s)	37, 93, 162
Eco31I	GGTCTC	1 cut(s)	548
Eco53kI	GAGCTC	2 cut(s)	35, 160
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	186
EcoICRI	GAGCTC	2 cut(s)	35, 160
EcoRII	CCWGG	3 cut(s)	66, 120, 301
EcoT14I	CCWWGG	3 cut(s)	210, 549, 654
EcoT38I	GRGCYC	3 cut(s)	37, 93, 162
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	3 cut(s)	210, 549, 654
FaqI	GGGAC	1 cut(s)	20
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	84, 256, 785, 951, 954
FokI	GGATG	3 cut(s)	83, 671, 1152
FriOI	GRGCYC	3 cut(s)	37, 93, 162
Fsp4HI	GCNGC	5 cut(s)	84, 256, 785, 951, 954
FspBI	CTAG	2 cut(s)	468, 749
GlaI	GCGC	2 cut(s)	97, 307
GluI	GCNGC	5 cut(s)	84, 256, 785, 951, 954
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	143, 600
HaeII	RGCGCY	2 cut(s)	99, 309
HaeIII	GGCC	1 cut(s)	923
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	98, 308
Hin1I	GRCGYC	2 cut(s)	96, 117
Hin6I	GCGC	2 cut(s)	96, 306
HinP1I	GCGC	2 cut(s)	96, 306
HinfI	GANTC	3 cut(s)	125, 764, 879
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	878, 1000
Hpy188III	TCNNGA	3 cut(s)	413, 570, 1052
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	98, 934
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	7 cut(s)	355, 452, 491, 644, 674, 760, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 314, 376
HpyF3I	CTNAG	9 cut(s)	36, 186, 326, 381, 509, 544, 740, 911, 1050
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	2 cut(s)	96, 117
HspAI	GCGC	2 cut(s)	96, 306
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
Lsp1109I	GCAGC	3 cut(s)	796, 937, 940
LweI	GCATC	3 cut(s)	506, 631, 649
MaeI	CTAG	2 cut(s)	468, 749
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	2 cut(s)	56, 476
MalI	GATC	6 cut(s)	144, 300, 473, 592, 984, 997
MboI	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
MboII	GAAGA	8 cut(s)	137, 279, 434, 593, 685, 830, 865, 1070
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	5 cut(s)	142, 298, 471, 590, 982
MhlI	GDGCHC	5 cut(s)	37, 93, 162, 707, 1051
MluCI	AATT	9 cut(s)	46, 215, 248, 481, 645, 801, 870, 1035, 1123
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	866
MnlI	CCTC	6 cut(s)	67, 577, 724, 913, 947, 973
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	6 cut(s)	150, 179, 668, 846, 1019, 1029
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	950
MspR9I	CCNGG	3 cut(s)	68, 122, 303
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	3 cut(s)	68, 122, 303
MwoI	GCNNNNNNNGC	3 cut(s)	83, 314, 376
NarI	GGCGCC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
NlaIV	GGNNCC	5 cut(s)	24, 97, 300, 473, 592
NmeAIII	GCCGAG	2 cut(s)	51, 72
NmuCI	GTSAC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	923
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	764, 879
PkrI	GCNGC	5 cut(s)	85, 257, 786, 952, 955
PleI	GAGTC	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	1029
Psp124BI	GAGCTC	2 cut(s)	37, 162
Psp6I	CCWGG	3 cut(s)	66, 120, 301
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	3 cut(s)	66, 120, 301
PspN4I	GGNNCC	5 cut(s)	24, 97, 300, 473, 592
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	5 cut(s)	142, 298, 471, 590, 982
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	2 cut(s)	37, 162
SaqAI	TTAA	6 cut(s)	150, 179, 668, 846, 1019, 1029
SatI	GCNGC	5 cut(s)	84, 256, 785, 951, 954
Sau3AI	GATC	6 cut(s)	142, 298, 471, 590, 982, 995
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	68, 122, 303
SduI	GDGCHC	5 cut(s)	37, 93, 162, 707, 1051
SetI	ASST	8 cut(s)	16, 37, 162, 538, 545, 758, 939, 952
SfaNI	GCATC	3 cut(s)	506, 631, 649
SfcI	CTRYAG	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	9 cut(s)	46, 215, 248, 481, 645, 801, 870, 1035, 1123
SseBI	AGGCCT	1 cut(s)	923
SsiI	CCGC	5 cut(s)	77, 83, 224, 256, 956
SspDI	GGCGCC	1 cut(s)	95
SspI	AATATT	2 cut(s)	839, 1087
SspMI	CTAG	2 cut(s)	468, 749
SstI	GAGCTC	2 cut(s)	37, 162
StuI	AGGCCT	1 cut(s)	923
StyD4I	CCNGG	3 cut(s)	66, 120, 301
StyI	CCWWGG	3 cut(s)	210, 549, 654
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	280
TasI	AATT	9 cut(s)	46, 215, 248, 481, 645, 801, 870, 1035, 1123
TauI	GCSGC	2 cut(s)	86, 258
TfiI	GAWTC	2 cut(s)	764, 879
Tru1I	TTAA	6 cut(s)	150, 179, 668, 846, 1019, 1029
Tru9I	TTAA	6 cut(s)	150, 179, 668, 846, 1019, 1029
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	3 cut(s)	784, 950, 953
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	9 cut(s)	256, 357, 377, 429, 435, 452, 622, 756, 979
TspGWI	ACGGA	2 cut(s)	464, 1030
TspRI	CASTG	1 cut(s)	583
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	2 cut(s)	1035, 1123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	2 cut(s)	468, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.