Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007650

Physical Location & Seq

Genomic Coordinates Forward (+)

25768642 .. 25770300

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTGAGGCTATGAAACCTGTAGCAAATATAAGTGTGGAAAGTCAGATGTCAAGTCAGGATGCATTAGATGAACCTCAACTTGAAATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGCATTAGATATGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAATATATTTGGTAAGTCTAGTCATGAAAATGAAGATTTGACGAGAGTGCTGGTTGGCAATGCAGTGACAGTTCATGCTACAATCCGTGACAATTTGACTGCTGTGGCATCACATTTTCTGAGCATTGCTCTTTTTCTCTCTGGAAATCCTGGAGAACACGGATCCAGCCGTCTTCTTGCTGATTTACTGGAGGTTATGGACTTCATAAACGATGCAGTTGTATCCATGGATGCTTTTCTAACTGCATACAAACCATCCGCAATATTCTACTTGTGCCCTGTTGAGCAAAGTTATGGGAATGAGGAATTACTAAGCACTCTAGCAAGGTTGCATGATTCATTACTTCCATCTTTGCAGCGTGGGTTCCGAATAATTTTGGCAGCTGGAGAAGATAAAATGTTGTCAAATGTTGCTATAAGTTTGAAGATGTCATCAATGAGAATTGTCAAGTTTGGATGGAAACTGTTAGACTCATGCTATCTAAGTGCTTATCTGCTCTTATATTTGGTAAGTCTAGTAAAAGCTTCTGAGTTCCTCAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

245

Amino Acids

26.88

Weight (kDa)

4.67

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27752 AT1G27752
fragaria_vesca	FvH4_2g33210 FvH4_2g33210 FvH4_2g33210 FvH4_2g33210
malus_domestica	MD03G1160700.v1.1 MD08G1085900.v1.1 MD15G1071100.v1.1
prunus_persica	Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1
pyrus_communis	pycom08g07060 pycom15g06690
rosa_chinensis	RchiOBHm_Chr6g0309461
rosa_laevigata	RLG00000013072
rosa_multiflora	Rmu_sc0014034.1_g000003
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485300 Rh6BG494600 Rh6CG499600 Rh6DG485700
rosa_wichuraiana	Rw6G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	733
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	345, 358
AcsI	RAATTY	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	86, 613
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	572, 713
AluI	AGCT	2 cut(s)	572, 713
AlwI	GGATC	2 cut(s)	345, 358
ApeKI	GCWGC	2 cut(s)	544, 569
ApoI	RAATTY	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	180, 353
BbvI	GCAGC	2 cut(s)	556, 581
BccI	CCATC	3 cut(s)	451, 544, 639
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	207, 509, 704
BfmI	CTRYAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	545, 570
BlsI	GCNGC	2 cut(s)	546, 571
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	3 cut(s)	168, 352, 554
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	5 cut(s)	52, 132, 305, 391, 409
BpiI	GAAGAC	2 cut(s)	180, 353
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	4 cut(s)	153, 360, 398, 594
BsaJI	CCNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	253, 312
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	4 cut(s)	67, 424, 443, 650
BseMI	GCAATG	2 cut(s)	253, 312
BseMII	CTCAG	2 cut(s)	299, 708
BseNI	ACTGG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	556, 581
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	350
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	300, 709
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	168, 352, 554
BspPI	GGATC	2 cut(s)	345, 358
BsrDI	GCAATG	2 cut(s)	253, 312
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	259, 654
BstDEI	CTNAG	4 cut(s)	308, 500, 671, 717
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	4 cut(s)	67, 424, 443, 650
BstKTI	GATC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	556, 581
BstV2I	GAAGAC	2 cut(s)	180, 353
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	67, 424, 443, 650
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	211
CviAII	CATG	5 cut(s)	212, 263, 415, 521, 663
CviJI	RGCY	5 cut(s)	11, 167, 357, 572, 713
CviKI_1	RGCY	5 cut(s)	11, 167, 357, 572, 713
DdeI	CTNAG	4 cut(s)	308, 500, 671, 717
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	215, 266, 418, 524, 666
FatI	CATG	5 cut(s)	211, 262, 414, 520, 662
Fnu4HI	GCNGC	2 cut(s)	545, 570
FokI	GGATG	4 cut(s)	74, 430, 431, 657
Fsp4HI	GCNGC	2 cut(s)	545, 570
FspBI	CTAG	3 cut(s)	207, 509, 704
GluI	GCNGC	2 cut(s)	545, 570
GsuI	CTGGAG	4 cut(s)	153, 360, 398, 594
Hin1II	CATG	5 cut(s)	215, 266, 418, 524, 666
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	3 cut(s)	110, 524, 659
Hpy188I	TCNGA	6 cut(s)	48, 94, 115, 309, 557, 718
Hpy188III	TCNNGA	4 cut(s)	59, 170, 212, 330
HpyCH4III	ACNGT	2 cut(s)	259, 654
HpyCH4V	TGCA	7 cut(s)	65, 106, 251, 404, 434, 520, 544
HpyF3I	CTNAG	4 cut(s)	308, 500, 671, 717
Hsp92II	CATG	5 cut(s)	215, 266, 418, 524, 666
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	556, 581
LweI	GCATC	5 cut(s)	52, 132, 305, 391, 409
MaeI	CTAG	3 cut(s)	207, 509, 704
MaeIII	GTNAC	2 cut(s)	253, 275
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	5 cut(s)	185, 233, 353, 590, 625
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	6 cut(s)	87, 100, 280, 494, 561, 630
MlyI	GAGTC	2 cut(s)	119, 653
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	87, 373, 484, 734
Mph1103I	ATGCAT	1 cut(s)	67
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	215, 266, 418, 524, 666
NlaIV	GGNNCC	3 cut(s)	168, 352, 554
NmuCI	GTSAC	2 cut(s)	253, 275
NsiI	ATGCAT	1 cut(s)	67
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	546, 571
PleI	GAGTC	2 cut(s)	118, 653
PpsI	GAGTC	2 cut(s)	118, 653
PsiI	TTATAA	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	168, 352, 554
PsuI	RGATCY	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	572
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	2 cut(s)	545, 570
Sau3AI	GATC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	119, 653
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	6 cut(s)	22, 79, 384, 518, 574, 715
SfaNI	GCATC	5 cut(s)	52, 132, 305, 391, 409
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	6 cut(s)	87, 100, 280, 494, 561, 630
SsiI	CCGC	1 cut(s)	447
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	3 cut(s)	207, 509, 704
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	259, 654
TasI	AATT	6 cut(s)	87, 100, 280, 494, 561, 630
TfiI	GAWTC	1 cut(s)	524
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	253, 275
TseI	GCWGC	2 cut(s)	544, 569
Tsp45I	GTSAC	2 cut(s)	253, 275
TspDTI	ATGAA	7 cut(s)	29, 87, 228, 234, 251, 382, 516
TspGWI	ACGGA	2 cut(s)	263, 363
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	87
XspI	CTAG	3 cut(s)	207, 509, 704
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.