Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007650

Physical Location & Seq

Genomic Coordinates Reverse (-)

7131771 .. 7136729

Gene Structure 4959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1085900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGTCGAACAGAAACTCTCACCCCCGAACCGCCGGAAGCAAGGGTGTCCCAAAACCCCAAAAGGTCTTCGTCCCCAAGAATCCAGACAATAACAATCCAATCCCTCGTGAGCCCAATCTCAATCCCAATCCCAATCCCACGCTCTCCACCTCTCTCCGGCAATCGCTATCCAAGCAGCAATCCAATGCCGAAACTTCCACCGCTGCTTCGGTGCCGCCGTCGGGGAGCAGGGTTCGGATGGGGGACAAAGGTGAGTGGGTGCCGAGCAGAGCTCAGGGTGGCAATTTCGTAAGTTACTTGCCCCAGGATGAGGCGGTGGCGGCTGGGCTCGGCGCCGACGAAGGCGGATTGGACGCCCTGGAGTCGCAGAGAGTGGTGGATCTTCTTAACAGAGAGCTCTCTCGCCTGCTGAAGTTAAACCCTAAGGAGTTTTGGCGACAAGTGGCTAGTGATACATCGTTGCATGAATTTCTGGATAGCTTTCTACAGTTTAGGAGTAGGTGGTATGATTTCCCTCATCGCGGCGCCAAGGAATTGGTGGCGGGGGTCATTGTTGGGGAGTTTGAATTGAGCCGCCGTGTGTTCATGGTATTATATCGAATATCTTCTAATAGGGATCCTGGCGCTCGTCTTGCTGATAGTCTCAGTTCACAAGACCATGAAGATCTTTTGCAGGAGATGAAGTTGCTTGACTTGCCTAAGTTGTTAGACATATGTGCTATATATGGTCATGAAAATGAAGATTTGACCAGAGTGCTGGTTGGCAATGCAGTAAAAGCTCATACTAGGATCCGTGACAATTTGACTGCAGTAGCATCACATTTCCTTAGCATTGTCCAAACAATGTACCAACGTAGCAGCTCAGCCTTGGAGACCCTTTTTTCCTCTGGAAACACTGGAGAACACGGATCCAGCCGTCTTCTTGCTGATTTATTGGAAGTTATGGACTTCATCAACGATGCAATTGTATCCATGGATGCTTTCTTAACTGCATACGAACCATCTGCTGTCTTCTTGTTGTGCCCTGTTGAAACCAGTCATGGGAACGAGGCATTACTAAGCACTCTAGCAAGGTTGCATGATTCATTACTTCCATCTTTGCAGCGTGGATTTCGAATAATTTCAGCAGATGGAGAAGATAAAATGGTGTCTAATATTGCTTTAAGTTTGAAGATGTTATCAAAGAGAATTGTCAGATTCGGTTGGAAACTATTGGATTTGTGCTATCTAAGTGATGAGGCCTTCAAAGCTAACCTCCCCATTCCAGCTGCTGCGGAGATGTTTCCAGCCAAAGTGGAGGATCTTTTCATTAGATCAGATATACTGGTTCAAACTTTAAGAGAGATTAATGGAATTTCCGTATGTGCTCAGGAGAACCAGAATAGGCAAACATTTCTTCAAAATATTGAAAAGAACTTCAACATTATGAGCAAAATGGAGAATTTACAAAAGATTGGATGGATAATCATGGATGATGAGCAGCTGGGGTATGTATATGGAATACTTATGTCTACTCAGAAACTCATAGTTAAGGAGCAGCCCAGTACGAAAGCCGCTTTGACAAACAAGAAGGTGCAGATAGATGAAGATGTTGCAATTGTGGAGTCGCGAATCAGTCAAATAAAGGACCTGTTCCCTGATTATGGAAAAGGTTTCTTAGCTGCTTGTCTTGAAGCCTATAACCACAATCCTGAGGAGGTTATTCAGAGGATTCTTGAGGGAACTCTTCATGAAGACCTGCAGTCCTTGGATATGTCATTAGAGACGATGCCAGCACCCAAGACTGCAACTGTTGGTAGGAATGATAAAGGGAAAGGGAAAGGAAAAGTAGGTGAGCTTACAGCACCACCCGCCACTAGTACAGCAGTTGTTGTGAGGGATAAACAAAATGGTGCCCCTTCGGTTTCATCTTCCTCATCACAAGGAAGGTTTGTTAGGAAGTCTAAAGCAGACATGCCTGATACGGATACCCTGGATGACAGAAATGAGAAATACATTGCAAACACTGCTGCTCTTATTTCACAGTTTGAGTATGACGATGAGTATGATGACTCTTTTGATGATCTGGGTCTGAGTGTTGCGGATTCAGGAGTGGGGGAAAGTGAGATATTTAGTGAAAAAAGCAGCTCGAATACGGGTAGGCCGTGGGAAACACAAACTGGAAGTTCATCTCAGGATGCAGCTACTTCCAAATGGGGCTCCAGAAAGAAGCCCCAATATTATGTCAAGGATGGTAAGAACTATAGTTACAAAGTTGCAGGCTCAGTTGCAGTTGCAAATGCTGGGGAAGCATCATTAATTACTGAAGCACAACGAGAAGTTATTCATGGCCTTGGCCGTGGTGGCAATCTTCCTCTAGGTGCGGTTAAGAAGCTGACAGAATACTCGGAGGAGCAAGACAAACAATTTGACAATTCTCAAGCCGAAGAGAGAGGTCAGATGGATGGGAGAGGGAGAGGGTTTGTTGGGAATGCTAGGGGCAGAGGACGGAGGGGTGGAAGACAAAGGGAGTCCAATGAGGAGCAAGTAACTAAACACAACGATAATGCCGAAGGTGAGTCTGTTGGGAATGCTAGGGGCAAAGGACGGAGGGGAGGAAGACAAAGGGAGTCCAATGAGGAGCAAGATAATAAACACAACGATAATGCCGAAGGTGAAGACGGAGAGAATGCCGGAAATCAAAGGGGAAGTGGGGGAAGGAGAGGAGGCAGAGGAGGAGGTGGGAGAAATAATTTCAGGAAGGACCGGGCCATGAATAAGCACTTTTCTGGTTTAGGTGGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

929

Amino Acids

102.06

Weight (kDa)

5.95

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CUE	PF02845	538 - 575	9.8e-11	CUE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27752 AT1G27752
fragaria_vesca	FvH4_2g33210 FvH4_2g33210 FvH4_2g33210 FvH4_2g33210
malus_domestica	MD03G1160700.v1.1 MD08G1085900.v1.1 MD15G1071100.v1.1
prunus_persica	Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1 Prupe.1G423800_v2.0.a1
pyrus_communis	pycom08g07060 pycom15g06690
rosa_chinensis	RchiOBHm_Chr6g0309461
rosa_laevigata	RLG00000013072
rosa_multiflora	Rmu_sc0014034.1_g000003
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485300 Rh6BG494600 Rh6CG499600 Rh6DG485700
rosa_wichuraiana	Rw6G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1746
AccB1I	GGYRCC	5 cut(s)	211, 259, 332, 524, 1892
AccI	GTMKAC	1 cut(s)	1511
AccII	CGCG	2 cut(s)	522, 1609
AclWI	GGATC	8 cut(s)	387, 611, 624, 784, 797, 903, 916, 1308
AcoI	YGGCCR	1 cut(s)	2335
AcsI	RAATTY	3 cut(s)	467, 1353, 1441
AcuI	CTGAAG	2 cut(s)	431, 2325
AcyI	GRCGYC	3 cut(s)	333, 354, 525
AfaI	GTAC	3 cut(s)	848, 1546, 1861
AfiI	CCNNNNNNNGG	6 cut(s)	156, 221, 310, 521, 1041, 1643
AgsI	TTSAA	9 cut(s)	566, 1031, 1171, 1246, 1331, 1400, 1409, 1420, 1673
AhdI	GACNNNNNGTC	1 cut(s)	1741
AhlI	ACTAGT	1 cut(s)	1856
AjnI	CCWGG	4 cut(s)	303, 357, 619, 1971
Alw21I	GWGCWC	3 cut(s)	274, 399, 1369
Alw26I	GTCTC	3 cut(s)	647, 866, 1757
AlwI	GGATC	8 cut(s)	387, 611, 624, 784, 797, 903, 916, 1308
AlwNI	CAGNNNCTG	1 cut(s)	1271
AoxI	GGCC	5 cut(s)	1239, 2141, 2329, 2335, 2748
ApoI	RAATTY	3 cut(s)	467, 1353, 1441
ArsI	GACNNNNNNTTYG	2 cut(s)	2390, 2422
AseI	ATTAAT	2 cut(s)	1347, 2297
Asp700I	GAANNNNTTC	3 cut(s)	604, 1120, 2322
AspLEI	GCGC	3 cut(s)	335, 527, 626
AspS9I	GGNCC	3 cut(s)	1627, 2743, 2748
AsuC2I	CCSGG	1 cut(s)	2747
AsuHPI	GGTGA	5 cut(s)	11, 263, 1844, 2567, 2666
AsuII	TTCGAA	1 cut(s)	1114
AvaII	GGWCC	2 cut(s)	1627, 2743
AxyI	CCTNAGG	2 cut(s)	423, 1692
BaeGI	GKGCMC	2 cut(s)	1025, 1897
BamHI	GGATCC	3 cut(s)	616, 789, 908
BanI	GGYRCC	5 cut(s)	211, 259, 332, 524, 1892
BanII	GRGCYC	5 cut(s)	114, 274, 330, 399, 2201
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	7 cut(s)	58, 911, 1003, 1740, 2506, 2605, 2664
Bbv12I	GWGCWC	3 cut(s)	274, 399, 1369
BccI	CCATC	8 cut(s)	232, 1009, 1102, 1124, 1452, 2225, 2434, 2438
BceAI	ACGGC	5 cut(s)	202, 561, 900, 2128, 2322
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	4 cut(s)	305, 359, 621, 1973
BciVI	GTATCC	2 cut(s)	979, 1960
BcnI	CCSGG	1 cut(s)	2747
BcoDI	GTCTC	3 cut(s)	647, 866, 1757
BcuI	ACTAGT	1 cut(s)	1856
BfaI	CTAG	8 cut(s)	447, 786, 1067, 1857, 2357, 2475, 2574, 2785
BfmI	CTRYAG	4 cut(s)	485, 807, 1739, 2242
BfoI	RGCGCY	3 cut(s)	336, 528, 627
BfuAI	ACCTGC	1 cut(s)	1746
BfuI	GTATCC	2 cut(s)	979, 1960
BglI	GCCNNNNNGGC	1 cut(s)	2343
BglII	AGATCT	1 cut(s)	664
BlpI	GCTNAGC	1 cut(s)	862
Bme1390I	CCNGG	5 cut(s)	305, 359, 621, 1973, 2747
Bme18I	GGWCC	2 cut(s)	1627, 2743
BmeRI	GACNNNNNGTC	1 cut(s)	1741
BmgT120I	GGNCC	3 cut(s)	1627, 2743, 2748
BmiI	GGNNCC	9 cut(s)	213, 261, 334, 526, 618, 791, 910, 1894, 2200
BmrFI	CCNGG	5 cut(s)	305, 359, 621, 1973, 2747
BmrI	ACTGGG	1 cut(s)	1536
BmsI	GCATC	6 cut(s)	824, 949, 967, 1758, 2167, 2300
BmuI	ACTGGG	1 cut(s)	1536
BpiI	GAAGAC	7 cut(s)	58, 911, 1003, 1740, 2506, 2605, 2664
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	3 cut(s)	380, 918, 2185
Bpu10I	CCTNAGC	3 cut(s)	273, 827, 1368
Bpu1102I	GCTNAGC	1 cut(s)	862
Bpu14I	TTCGAA	1 cut(s)	1114
BpuEI	CTTGAG	2 cut(s)	1736, 2403
BpuMI	CCSGG	1 cut(s)	2747
BsaHI	GRCGYC	3 cut(s)	333, 354, 525
BsaI	GGTCTC	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	6 cut(s)	156, 221, 310, 521, 1041, 1643
Bse1I	ACTGG	5 cut(s)	901, 1035, 1329, 1542, 2164
Bse21I	CCTNAGG	2 cut(s)	423, 1692
Bse3DI	GCAATG	2 cut(s)	772, 1995
BseBI	CCWGG	4 cut(s)	305, 359, 621, 1973
BseGI	GGATG	9 cut(s)	243, 313, 982, 1463, 1477, 1981, 2182, 2236, 2449
BseLI	CCNNNNNNNGG	6 cut(s)	156, 221, 310, 521, 1041, 1643
BseMI	GCAATG	2 cut(s)	772, 1995
BseMII	CTCAG	9 cut(s)	287, 658, 876, 1382, 1529, 1683, 2063, 2186, 2277
BseNI	ACTGG	5 cut(s)	901, 1035, 1329, 1542, 2164
BseRI	GAGGAG	7 cut(s)	1709, 2405, 2534, 2633, 2718, 2727, 2730
BseSI	GKGCMC	2 cut(s)	1025, 1897
BseYI	CCCAGC	3 cut(s)	323, 1483, 2282
BsgI	GTGCAG	1 cut(s)	1595
Bsh1236I	CGCG	2 cut(s)	522, 1609
BshFI	GGCC	5 cut(s)	1241, 2143, 2331, 2337, 2750
BshNI	GGYRCC	5 cut(s)	211, 259, 332, 524, 1892
BsiHKAI	GWGCWC	3 cut(s)	274, 399, 1369
BsiSI	CCGG	4 cut(s)	33, 157, 2673, 2746
BslFI	GGGAC	3 cut(s)	32, 56, 257
BslI	CCNNNNNNNGG	6 cut(s)	156, 221, 310, 521, 1041, 1643
BsmAI	GTCTC	3 cut(s)	647, 866, 1757
BsmBI	CGTCTC	1 cut(s)	1757
BsmFI	GGGAC	3 cut(s)	32, 56, 257
BsmI	GAATGC	3 cut(s)	2476, 2575, 2674
BsnI	GGCC	5 cut(s)	1241, 2143, 2331, 2337, 2750
Bso31I	GGTCTC	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	1114
Bsp1286I	GDGCHC	8 cut(s)	114, 274, 330, 399, 1025, 1369, 1897, 2201
Bsp143I	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
Bsp1720I	GCTNAGC	1 cut(s)	862
Bsp19I	CCATGG	1 cut(s)	972
Bsp68I	TCGCGA	1 cut(s)	1609
BspANI	GGCC	5 cut(s)	1241, 2143, 2331, 2337, 2750
BspCNI	CTCAG	9 cut(s)	286, 657, 875, 1381, 1528, 1684, 2064, 2185, 2276
BspFNI	CGCG	2 cut(s)	522, 1609
BspHI	TCATGA	2 cut(s)	730, 1729
BspLI	GGNNCC	9 cut(s)	213, 261, 334, 526, 618, 791, 910, 1894, 2200
BspMAI	CTGCAG	2 cut(s)	811, 1743
BspMI	ACCTGC	1 cut(s)	1746
BspPI	GGATC	8 cut(s)	387, 611, 624, 784, 797, 903, 916, 1308
BspT104I	TTCGAA	1 cut(s)	1114
BspT107I	GGYRCC	5 cut(s)	211, 259, 332, 524, 1892
BspTNI	GGTCTC	1 cut(s)	866
BsrDI	GCAATG	2 cut(s)	772, 1995
BsrI	ACTGG	5 cut(s)	901, 1035, 1329, 1542, 2164
BssMI	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
BssNI	GRCGYC	3 cut(s)	333, 354, 525
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	5 cut(s)	528, 867, 972, 1746, 2332
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	4 cut(s)	305, 359, 621, 1973
Bst4CI	ACNGT	3 cut(s)	489, 1792, 2025
Bst6I	CTCTTC	2 cut(s)	1731, 2421
BstACI	GRCGYC	3 cut(s)	333, 354, 525
BstAPI	GCANNNNNTGC	1 cut(s)	2006
BstBI	TTCGAA	1 cut(s)	1114
BstC8I	GCNNGC	3 cut(s)	407, 1773, 2260
BstDSI	CCRYGG	3 cut(s)	972, 2144, 2338
BstF5I	GGATG	9 cut(s)	243, 313, 982, 1463, 1477, 1981, 2182, 2236, 2449
BstFNI	CGCG	2 cut(s)	522, 1609
BstH2I	RGCGCY	3 cut(s)	336, 528, 627
BstHHI	GCGC	3 cut(s)	335, 527, 626
BstKTI	GATC	8 cut(s)	382, 619, 667, 792, 911, 1303, 1316, 2065
BstMAI	GTCTC	3 cut(s)	647, 866, 1757
BstMBI	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
BstNI	CCWGG	4 cut(s)	305, 359, 621, 1973
BstNSI	RCATGY	1 cut(s)	1957
BstSCI	CCNGG	5 cut(s)	303, 357, 619, 1971, 2745
BstSFI	CTRYAG	4 cut(s)	485, 807, 1739, 2242
BstSLI	GKGCMC	2 cut(s)	1025, 1897
BstUI	CGCG	2 cut(s)	522, 1609
BstV2I	GAAGAC	7 cut(s)	58, 911, 1003, 1740, 2506, 2605, 2664
BstX2I	RGATCY	6 cut(s)	379, 616, 664, 789, 908, 1300
BstXI	CCANNNNNNTGG	2 cut(s)	535, 757
BstYI	RGATCY	6 cut(s)	379, 616, 664, 789, 908, 1300
Bsu36I	CCTNAGG	2 cut(s)	423, 1692
BsuI	GTATCC	2 cut(s)	979, 1960
BsuRI	GGCC	5 cut(s)	1241, 2143, 2331, 2337, 2750
BtgI	CCRYGG	3 cut(s)	972, 2144, 2338
BtgZI	GCGATG	1 cut(s)	503
BtsCI	GGATG	9 cut(s)	243, 313, 982, 1463, 1477, 1981, 2182, 2236, 2449
BtsI	GCAGTG	1 cut(s)	2004
BtsIMutI	CAGTG	2 cut(s)	894, 2004
BtuMI	TCGCGA	1 cut(s)	1609
BveI	ACCTGC	1 cut(s)	1746
Cac8I	GCNNGC	3 cut(s)	407, 1773, 2260
CaiI	CAGNNNCTG	1 cut(s)	1271
CciI	TCATGA	2 cut(s)	730, 1729
CfoI	GCGC	3 cut(s)	335, 527, 626
Cfr13I	GGNCC	3 cut(s)	1627, 2743, 2748
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	847, 1545, 1860
CviQI	GTAC	3 cut(s)	847, 1545, 1860
DinI	GGCGCC	2 cut(s)	334, 526
DpnI	GATC	8 cut(s)	381, 618, 666, 791, 910, 1302, 1315, 2064
DpnII	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
DriI	GACNNNNNGTC	1 cut(s)	1741
EaeI	YGGCCR	1 cut(s)	2335
Eam1104I	CTCTTC	2 cut(s)	1731, 2421
Eam1105I	GACNNNNNGTC	1 cut(s)	1741
EarI	CTCTTC	2 cut(s)	1731, 2421
EciI	GGCGGA	1 cut(s)	360
Ecl136II	GAGCTC	2 cut(s)	272, 397
Eco130I	CCWWGG	5 cut(s)	528, 867, 972, 1746, 2332
Eco147I	AGGCCT	1 cut(s)	1241
Eco24I	GRGCYC	5 cut(s)	114, 274, 330, 399, 2201
Eco31I	GGTCTC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	1627, 2743
Eco53kI	GAGCTC	2 cut(s)	272, 397
Eco57I	CTGAAG	2 cut(s)	431, 2325
Eco81I	CCTNAGG	2 cut(s)	423, 1692
EcoICRI	GAGCTC	2 cut(s)	272, 397
EcoO109I	RGGNCCY	1 cut(s)	1627
EcoRII	CCWGG	4 cut(s)	303, 357, 619, 1971
EcoT14I	CCWWGG	5 cut(s)	528, 867, 972, 1746, 2332
EcoT38I	GRGCYC	5 cut(s)	114, 274, 330, 399, 2201
EgeI	GGCGCC	2 cut(s)	334, 526
EheI	GGCGCC	2 cut(s)	334, 526
ErhI	CCWWGG	5 cut(s)	528, 867, 972, 1746, 2332
Esp3I	CGTCTC	1 cut(s)	1757
FaqI	GGGAC	3 cut(s)	32, 56, 257
FauI	CCCGC	2 cut(s)	535, 1858
FauNDI	CATATG	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	1511
FokI	GGATG	9 cut(s)	250, 320, 989, 1470, 1484, 1988, 2189, 2243, 2456
FriOI	GRGCYC	5 cut(s)	114, 274, 330, 399, 2201
FspBI	CTAG	8 cut(s)	447, 786, 1067, 1857, 2357, 2475, 2574, 2785
GlaI	GCGC	3 cut(s)	334, 526, 625
GsaI	CCCAGC	3 cut(s)	327, 1487, 2286
GsuI	CTGGAG	3 cut(s)	380, 918, 2185
HaeII	RGCGCY	3 cut(s)	336, 528, 627
HaeIII	GGCC	5 cut(s)	1241, 2143, 2331, 2337, 2750
HapII	CCGG	4 cut(s)	33, 157, 2673, 2746
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	3 cut(s)	335, 527, 626
Hin1I	GRCGYC	3 cut(s)	333, 354, 525
Hin6I	GCGC	3 cut(s)	333, 525, 624
HinP1I	GCGC	3 cut(s)	333, 525, 624
HpaII	CCGG	4 cut(s)	33, 157, 2673, 2746
HphI	GGTGA	5 cut(s)	11, 263, 1844, 2567, 2666
Hpy166II	GTNNAC	2 cut(s)	650, 1512
Hpy188I	TCNGA	8 cut(s)	237, 1196, 1318, 1518, 1707, 2073, 2389, 2439
Hpy8I	GTNNAC	2 cut(s)	650, 1512
Hpy99I	CGWCG	2 cut(s)	223, 341
HpyAV	CCTTC	9 cut(s)	335, 1252, 1564, 1908, 1920, 2546, 2645, 2691, 2734
HpyCH4III	ACNGT	3 cut(s)	489, 1792, 2025
HpyCH4IV	ACGT	1 cut(s)	853
HpySE526I	ACGT	1 cut(s)	853
Hsp92I	GRCGYC	3 cut(s)	333, 354, 525
HspAI	GCGC	3 cut(s)	333, 525, 624
KasI	GGCGCC	2 cut(s)	332, 524
Kzo9I	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
LmnI	GCTCC	6 cut(s)	225, 1534, 2204, 2392, 2521, 2620
LweI	GCATC	6 cut(s)	824, 949, 967, 1758, 2167, 2300
MaeI	CTAG	8 cut(s)	447, 786, 1067, 1857, 2357, 2475, 2574, 2785
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	4 cut(s)	293, 794, 2246, 2527
MalI	GATC	8 cut(s)	381, 618, 666, 791, 910, 1302, 1315, 2064
MboI	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
MfeI	CAATTG	2 cut(s)	963, 1596
MflI	RGATCY	6 cut(s)	379, 616, 664, 789, 908, 1300
MhlI	GDGCHC	8 cut(s)	114, 274, 330, 399, 1025, 1369, 1897, 2201
Mly113I	GGCGCC	2 cut(s)	333, 525
MlyI	GAGTC	6 cut(s)	371, 1613, 2045, 2519, 2567, 2618
MmeI	TCCRAC	1 cut(s)	1184
MroXI	GAANNNNTTC	3 cut(s)	604, 1120, 2322
MseI	TTAA	9 cut(s)	387, 416, 986, 1163, 1337, 1347, 1530, 2297, 2367
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	3 cut(s)	203, 1268, 1483
MspI	CCGG	4 cut(s)	33, 157, 2673, 2746
MspR9I	CCNGG	5 cut(s)	305, 359, 621, 1973, 2747
MunI	CAATTG	2 cut(s)	963, 1596
Mva1269I	GAATGC	3 cut(s)	2476, 2575, 2674
MvaI	CCWGG	4 cut(s)	305, 359, 621, 1973
MvnI	CGCG	2 cut(s)	522, 1609
NarI	GGCGCC	2 cut(s)	333, 525
NciI	CCSGG	1 cut(s)	2747
NcoI	CCATGG	1 cut(s)	972
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
NlaIV	GGNNCC	9 cut(s)	213, 261, 334, 526, 618, 791, 910, 1894, 2200
NmeAIII	GCCGAG	2 cut(s)	288, 309
NmuCI	GTSAC	1 cut(s)	794
NruI	TCGCGA	1 cut(s)	1609
NspI	RCATGY	1 cut(s)	1957
NspV	TTCGAA	1 cut(s)	1114
PagI	TCATGA	2 cut(s)	730, 1729
PceI	AGGCCT	1 cut(s)	1241
PcsI	WCGNNNNNNNCGW	5 cut(s)	215, 336, 2141, 2547, 2646
PctI	GAATGC	3 cut(s)	2476, 2575, 2674
PdmI	GAANNNNTTC	3 cut(s)	604, 1120, 2322
PfeI	GAWTC	6 cut(s)	79, 1082, 1197, 1611, 1711, 2084
PleI	GAGTC	6 cut(s)	370, 1612, 2045, 2518, 2566, 2617
PluTI	GGCGCC	2 cut(s)	336, 528
PpsI	GAGTC	6 cut(s)	370, 1612, 2045, 2518, 2566, 2617
PpuMI	RGGWCCY	1 cut(s)	1627
PshBI	ATTAAT	2 cut(s)	1347, 2297
Psp124BI	GAGCTC	2 cut(s)	274, 399
Psp5II	RGGWCCY	1 cut(s)	1627
Psp6I	CCWGG	4 cut(s)	303, 357, 619, 1971
PspFI	CCCAGC	3 cut(s)	323, 1483, 2282
PspGI	CCWGG	4 cut(s)	303, 357, 619, 1971
PspN4I	GGNNCC	9 cut(s)	213, 261, 334, 526, 618, 791, 910, 1894, 2200
PspPI	GGNCC	3 cut(s)	1627, 2743, 2748
PspPPI	RGGWCCY	1 cut(s)	1627
PsrI	GAACNNNNNNTAC	2 cut(s)	2231, 2263
PstI	CTGCAG	2 cut(s)	811, 1743
PstNI	CAGNNNCTG	1 cut(s)	1271
PsuI	RGATCY	6 cut(s)	379, 616, 664, 789, 908, 1300
PvuII	CAGCTG	2 cut(s)	1268, 1483
RruI	TCGCGA	1 cut(s)	1609
RsaI	GTAC	3 cut(s)	848, 1546, 1861
RsaNI	GTAC	3 cut(s)	847, 1545, 1860
RseI	CAYNNNNRTG	1 cut(s)	735
SacI	GAGCTC	2 cut(s)	274, 399
SaqAI	TTAA	9 cut(s)	387, 416, 986, 1163, 1337, 1347, 1530, 2297, 2367
Sau3AI	GATC	8 cut(s)	379, 616, 664, 789, 908, 1300, 1313, 2062
Sau96I	GGNCC	3 cut(s)	1627, 2743, 2748
SchI	GAGTC	6 cut(s)	371, 1613, 2045, 2519, 2567, 2618
ScrFI	CCNGG	5 cut(s)	305, 359, 621, 1973, 2747
SduI	GDGCHC	8 cut(s)	114, 274, 330, 399, 1025, 1369, 1897, 2201
SfaNI	GCATC	6 cut(s)	824, 949, 967, 1758, 2167, 2300
SfcI	CTRYAG	4 cut(s)	485, 807, 1739, 2242
SfoI	GGCGCC	2 cut(s)	334, 526
SfuI	TTCGAA	1 cut(s)	1114
SinI	GGWCC	2 cut(s)	1627, 2743
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	1715, 2418
SmoI	CTYRAG	2 cut(s)	1715, 2418
SpeI	ACTAGT	1 cut(s)	1856
SseBI	AGGCCT	1 cut(s)	1241
SspDI	GGCGCC	2 cut(s)	332, 524
SspI	AATATT	3 cut(s)	1156, 1405, 2219
SspMI	CTAG	8 cut(s)	447, 786, 1067, 1857, 2357, 2475, 2574, 2785
SstI	GAGCTC	2 cut(s)	274, 399
StuI	AGGCCT	1 cut(s)	1241
StyD4I	CCNGG	5 cut(s)	303, 357, 619, 1971, 2745
StyI	CCWWGG	5 cut(s)	528, 867, 972, 1746, 2332
TaaI	ACNGT	3 cut(s)	489, 1792, 2025
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	4 cut(s)	5, 598, 1114, 2129
TatI	WGTACW	1 cut(s)	1859
TauI	GCSGC	5 cut(s)	217, 323, 525, 576, 1556
TfiI	GAWTC	6 cut(s)	79, 1082, 1197, 1611, 1711, 2084
Tru1I	TTAA	9 cut(s)	387, 416, 986, 1163, 1337, 1347, 1530, 2297, 2367
Tru9I	TTAA	9 cut(s)	387, 416, 986, 1163, 1337, 1347, 1530, 2297, 2367
TscAI	CASTG	2 cut(s)	901, 2011
TseFI	GTSAC	1 cut(s)	794
Tsp45I	GTSAC	1 cut(s)	794
TspGWI	ACGGA	7 cut(s)	782, 921, 1348, 1979, 2503, 2602, 2676
TspRI	CASTG	2 cut(s)	901, 2011
VpaK11BI	GGWCC	2 cut(s)	1627, 2743
VspI	ATTAAT	2 cut(s)	1347, 2297
XapI	RAATTY	3 cut(s)	467, 1353, 1441
XceI	RCATGY	1 cut(s)	1957
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	1511
XmnI	GAANNNNTTC	3 cut(s)	604, 1120, 2322
XspI	CTAG	8 cut(s)	447, 786, 1067, 1857, 2357, 2475, 2574, 2785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.