MD03G1166300.v1.1

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016798
Physical Location & Seq
Reverse (-)
22200249 .. 22201178
930 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1166300.v1.1.491

Sequence Viewer

Length: 930 bp
ATGGCAGACACTGGTGCTGGTGGCGCGGCAGCAATTTCTCTTCAACAAGCCTCCGACGATGACTCCATGCACAGCCCCCGGAGCGTCCCCACACTCTCTGGAGGCGCAAGTGGTGGTGGAGGAGGAGGGTGTTCGTCGTCCGGACACAAGAACATGGTATCACCGTTGGGTGATATTATCATCTCAAACTCAAAGAAACCGAGAGGGAGACCGCCGGGGTCCAAGAACAAGCCCAAACCCCCGATCGTCATCACCAAGGACTCGGGGTCAGCGATGAAGGCGGTGGTCCTCGAGATCTCCGCCGGGTCCGATGTGGTGGAGACGATTGTACAGTACGCCCGAAGGCGCCAGGTTGGCATCAGTGTGTTGAGCGGTTCAGGGGCGGTGTTGAACGTAAAGCTGAGACACCCAGCCGGGCCCCACGAACCGTCACTGTCTCTTCAGGGTCCATTCAACCTCCTCTCTCTCTCCGGCTCTTACATAGACTCCTTCCCGGCCGTCATCGCTTGCTCTTCTTCTCCTTCCGCCGCTGGTGGTGGTGGTGGTTCGGCCGTAGTACCGATGTCCGGGACTTATTCTCTTCTGGCTTGTTCGTCGTTCACGATATGTCTTGCGGGGGCGCAAGGGCACGTGTTTGGAGGGATTGTTGGGGGCAAGGTTGTGGCGGCGAGTACTGTGATGGTTGTGGCCGCCACGTTTTTGGATCCGACCCTTCAGAGGTTGCCTTTGCCGGTTGAGGGTGGCGGTGAATATGAAGGTGAGGAGGATACTAAGCCTTGCATTAATGAACAAAGTTGTCACACTTACGGTGGCGGCGGCGGTGGCCGGAGCAGTGGTGTTGCGAGTCCAACGTGCCAGATGAACACTAGCCCTCCTGATCATTATCATCAAGTCATGGCTTGGGGTCCTCCATCTCGCACTCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

310

Amino Acids

30.93

Weight (kDa)

7.64

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 94 - 233 1.1e-16 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 372
AccII CGCG 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 140
AclWI GGATC 2 cut(s) 698, 711
AcoI YGGCCR 4 cut(s) 495, 549, 687, 823
AcuI CTGAAG 2 cut(s) 425, 698
AcvI CACGTG 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 4 cut(s) 330, 335, 558, 673
AfiI CCNNNNNNNGG 3 cut(s) 566, 717, 737
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 44, 391, 454
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 4 cut(s) 202, 314, 397, 441
AlwI GGATC 2 cut(s) 698, 711
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 2 cut(s) 262, 290
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 5 cut(s) 416, 495, 549, 687, 823
ApaI GGGCCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 29
AseI ATTAAT 1 cut(s) 783
AspLEI GCGC 4 cut(s) 26, 107, 348, 622
AspS9I GGNCC 7 cut(s) 219, 286, 306, 416, 417, 446, 905
AsuC2I CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
AsuHPI GGTGA 5 cut(s) 153, 182, 244, 758, 770
AvaI CYCGRG 2 cut(s) 262, 290
AvaII GGWCC 5 cut(s) 219, 286, 306, 446, 905
BaeGI GKGCMC 2 cut(s) 420, 630
BamHI GGATCC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 420
BbrPI CACGTG 1 cut(s) 631
BbvI GCAGC 1 cut(s) 41
BccI CCATC 2 cut(s) 673, 919
BceAI ACGGC 2 cut(s) 482, 536
BciT130I CCWGG 1 cut(s) 350
BciVI GTATCC 1 cut(s) 760
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
BcoDI GTCTC 4 cut(s) 202, 314, 397, 441
BfaI CTAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 349
BfuI GTATCC 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 294
BisI GCNGC 7 cut(s) 27, 30, 528, 666, 690, 814, 817
BlsI GCNGC 7 cut(s) 28, 31, 529, 667, 691, 815, 818
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 7 cut(s) 79, 216, 304, 350, 415, 494, 568
Bme18I GGWCC 5 cut(s) 219, 286, 306, 446, 905
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 262, 290
BmgT120I GGNCC 7 cut(s) 219, 286, 306, 416, 417, 446, 905
BmiI GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 906
BmrFI CCNGG 7 cut(s) 79, 216, 304, 350, 415, 494, 568
BmsI GCATC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
BsaAI YACGTR 1 cut(s) 631
BsaBI GATNNNNATC 2 cut(s) 248, 882
BsaHI GRCGYC 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 77, 215, 255
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 717, 737
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 248, 882
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 77, 215, 255
BseJI GATNNNNATC 2 cut(s) 248, 882
BseLI CCNNNNNNNGG 3 cut(s) 566, 717, 737
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 4 cut(s) 135, 138, 449, 776
BseSI GKGCMC 2 cut(s) 420, 630
BseX3I CGGCCG 2 cut(s) 495, 549
BseXI GCAGC 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 409
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 3 cut(s) 246, 498, 552
BshFI GGCC 5 cut(s) 418, 497, 551, 689, 825
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 3 cut(s) 246, 498, 552
BsiHKCI CYCGRG 2 cut(s) 262, 290
BslFI GGGAC 2 cut(s) 71, 583
BslI CCNNNNNNNGG 3 cut(s) 566, 717, 737
BsmAI GTCTC 4 cut(s) 202, 314, 397, 441
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 71, 583
BsnI GGCC 5 cut(s) 418, 497, 551, 689, 825
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 2 cut(s) 262, 290
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 420, 630
Bsp13I TCCGGA 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 243, 294, 703, 877
BspANI GGCC 5 cut(s) 418, 497, 551, 689, 825
BspCNI CTCAG 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 906
BspPI GGATC 2 cut(s) 698, 711
BspQI GCTCTTC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 77, 215, 255
BssMI GATC 4 cut(s) 243, 294, 703, 877
BssNI GRCGYC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 6 cut(s) 165, 333, 429, 435, 676, 809
Bst6I CTCTTC 4 cut(s) 45, 444, 517, 585
BstACI GRCGYC 1 cut(s) 346
BstAUI TGTACA 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 401, 771
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 4 cut(s) 26, 107, 348, 622
BstKTI GATC 4 cut(s) 246, 297, 706, 880
BstMAI GTCTC 4 cut(s) 202, 314, 397, 441
BstMBI GATC 4 cut(s) 243, 294, 703, 877
BstMCI CGRYCG 3 cut(s) 246, 498, 552
BstMWI GCNNNNNNNGC 6 cut(s) 23, 81, 278, 354, 503, 822
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 7 cut(s) 77, 214, 302, 348, 413, 492, 566
BstSLI GKGCMC 2 cut(s) 420, 630
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 294, 703
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 2 cut(s) 294, 703
BstZI CGGCCG 2 cut(s) 495, 549
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 5 cut(s) 418, 497, 551, 689, 825
BtgZI GCGATG 2 cut(s) 287, 487
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 4 cut(s) 9, 367, 431, 838
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 4 cut(s) 26, 107, 348, 622
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 7 cut(s) 219, 286, 306, 416, 417, 446, 905
CseI GACGC 1 cut(s) 73
Csp6I GTAC 4 cut(s) 329, 334, 557, 672
CviAII CATG 3 cut(s) 67, 154, 895
CviQI GTAC 4 cut(s) 329, 334, 557, 672
DdeI CTNAG 2 cut(s) 401, 771
DinI GGCGCC 1 cut(s) 347
DpnI GATC 4 cut(s) 245, 296, 705, 879
DpnII GATC 4 cut(s) 243, 294, 703, 877
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 4 cut(s) 495, 549, 687, 823
EagI CGGCCG 2 cut(s) 495, 549
Eam1104I CTCTTC 4 cut(s) 45, 444, 517, 585
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 4 cut(s) 45, 444, 517, 585
EciI GGCGGA 2 cut(s) 289, 514
EclXI CGGCCG 2 cut(s) 495, 549
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 5 cut(s) 219, 286, 306, 446, 905
Eco52I CGGCCG 2 cut(s) 495, 549
Eco57I CTGAAG 2 cut(s) 425, 698
Eco72I CACGTG 1 cut(s) 631
Eco88I CYCGRG 2 cut(s) 262, 290
EcoO109I RGGNCCY 2 cut(s) 417, 905
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 420
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 70, 157, 898
FaiI YATR 6 cut(s) 68, 155, 482, 607, 753, 896
FaqI GGGAC 2 cut(s) 71, 583
FatI CATG 3 cut(s) 66, 153, 894
FauI CCCGC 1 cut(s) 607
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 7 cut(s) 27, 30, 528, 666, 690, 814, 817
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 7 cut(s) 27, 30, 528, 666, 690, 814, 817
FspBI CTAG 1 cut(s) 867
GlaI GCGC 4 cut(s) 25, 106, 347, 621
GluI GCNGC 7 cut(s) 27, 30, 528, 666, 690, 814, 817
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 5 cut(s) 418, 497, 551, 689, 825
HgaI GACGC 1 cut(s) 73
HhaI GCGC 4 cut(s) 26, 107, 348, 622
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 3 cut(s) 70, 157, 898
Hin6I GCGC 4 cut(s) 24, 105, 346, 620
HinP1I GCGC 4 cut(s) 24, 105, 346, 620
HinfI GANTC 4 cut(s) 62, 260, 485, 844
HphI GGTGA 5 cut(s) 153, 182, 244, 758, 770
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 55, 310, 708, 717
Hpy188III TCNNGA 5 cut(s) 99, 141, 292, 601, 875
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 3 cut(s) 59, 139, 598
HpyAV CCTTC 6 cut(s) 271, 336, 499, 531, 722, 749
HpyCH4III ACNGT 6 cut(s) 165, 333, 429, 435, 676, 809
HpyCH4IV ACGT 4 cut(s) 393, 630, 695, 851
HpyCH4V TGCA 2 cut(s) 70, 780
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 81, 278, 354, 503, 822
HpyF3I CTNAG 2 cut(s) 401, 771
HpySE526I ACGT 4 cut(s) 393, 630, 695, 851
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 3 cut(s) 70, 157, 898
HspAI GCGC 4 cut(s) 24, 105, 346, 620
KasI GGCGCC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 4 cut(s) 243, 294, 703, 877
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 81, 828
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 867
MaeII ACGT 4 cut(s) 393, 630, 695, 851
MaeIII GTNAC 2 cut(s) 429, 797
MalI GATC 4 cut(s) 245, 296, 705, 879
MbiI CCGCTC 1 cut(s) 372
MboI GATC 4 cut(s) 243, 294, 703, 877
MboII GAAGA 5 cut(s) 32, 431, 504, 507, 572
MflI RGATCY 2 cut(s) 294, 703
MhlI GDGCHC 2 cut(s) 420, 630
MluCI AATT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 346
MlyI GAGTC 4 cut(s) 56, 254, 479, 853
MmeI TCCRAC 3 cut(s) 78, 731, 872
MroI TCCGGA 1 cut(s) 140
MseI TTAA 1 cut(s) 783
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 530
MspR9I CCNGG 7 cut(s) 79, 216, 304, 350, 415, 494, 568
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 6 cut(s) 23, 81, 278, 354, 503, 822
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
NdeII GATC 4 cut(s) 243, 294, 703, 877
NlaIII CATG 3 cut(s) 70, 157, 898
NlaIV GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 906
NmuCI GTSAC 2 cut(s) 429, 797
PaeR7I CTCGAG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 599
PfoI TCCNGGA 1 cut(s) 566
PkrI GCNGC 7 cut(s) 28, 31, 529, 667, 691, 815, 818
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 4 cut(s) 56, 254, 479, 852
PluTI GGCGCC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 4 cut(s) 56, 254, 479, 852
Ppu21I YACGTR 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 905
PshBI ATTAAT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 348
PspCI CACGTG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 906
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 7 cut(s) 219, 286, 306, 416, 417, 446, 905
PspPPI RGGWCCY 1 cut(s) 905
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 2 cut(s) 294, 703
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 4 cut(s) 330, 335, 558, 673
RsaNI GTAC 4 cut(s) 329, 334, 557, 672
RseI CAYNNNNRTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 7 cut(s) 27, 30, 528, 666, 690, 814, 817
Sau3AI GATC 4 cut(s) 243, 294, 703, 877
Sau96I GGNCC 7 cut(s) 219, 286, 306, 416, 417, 446, 905
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 4 cut(s) 56, 254, 479, 853
ScrFI CCNGG 7 cut(s) 79, 216, 304, 350, 415, 494, 568
SduI GDGCHC 2 cut(s) 420, 630
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 347
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 5 cut(s) 219, 286, 306, 446, 905
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 33
SspDI GGCGCC 1 cut(s) 345
SspMI CTAG 1 cut(s) 867
StyD4I CCNGG 7 cut(s) 77, 214, 302, 348, 413, 492, 566
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 6 cut(s) 165, 333, 429, 435, 676, 809
TaiI ACGT 4 cut(s) 396, 633, 698, 854
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 33
TatI WGTACW 2 cut(s) 328, 671
TauI GCSGC 6 cut(s) 29, 530, 668, 692, 816, 819
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 4 cut(s) 16, 367, 438, 838
TseFI GTSAC 2 cut(s) 429, 797
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 429, 797
TspDTI ATGAA 4 cut(s) 290, 768, 801, 875
TspRI CASTG 4 cut(s) 16, 367, 438, 838
VpaK11BI GGWCC 5 cut(s) 219, 286, 306, 446, 905
VspI ATTAAT 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 867
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.