RchiOBHm_Chr5g0050611

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016798
Physical Location & Seq
Reverse (-)
51074687 .. 51076238
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32814

Sequence Viewer

Length: 1023 bp
ATGGCAGACTACGGCGGCCAGGGCCTAAACTTCTCTGCTCTCAACTCCGACGACGATGACTCCGACCACAGCCCCAAGAGCATGGCCGGCGTTTGTGGTGGAAAATCATCATCATCATCATCATCCAGGGTGGTGAAGCTCGAACCGGTCTTCAGAAGTCCTCATCATGAGCTTAGCGGCGTGGAGTTGAGAGGAAGAGGATCACCAAGTAGAGCTGGGGAGATGATGATGGTGGCAAGTTCGAGCAGGAAGCCGAGAGGAAGACCCCCGGGTTCGAAGAACAGGCCGAGACCTCCGATTGTGATCAACAAGGAGTCGGAGTCGGGCATGCAGTCAGTGGTGATCGAGATCTCTGCCGGGTCGGATGTGGTGGAGAGCCTGGTGCAGTACGCGCGTAGAAGACGGCTAGGGATTACCGTGCTAAGTGGTTGTGGCTCGGTCTCAAGCGTGACACTCCGACGCCCTTTGCTCCAGTCCCACCACGCGCCGGCGCCGGCTATGTCGCTTCACGGGCCGTTTAACCTGCTCAGTCTGTCGGGATCGTTTATGGAATCTCTCGCTACTTGTTCCTTTGGAATATCTCTGGCAGGATCACAAGGCCAGGTGTTTGGAGGGATTGTCGGAGGCCAGGTCATAGCGGCGAGTCTGGTTGTGGTTGTGGCTGCCACTTTTCTCAATCCTAGGTTTCACAAGTTGCCGGCTGGCCCTGGTCTTGCTAGTGGTGATGAATCTGATGATGATGATACTCAGGATACTAAGCCTTCCTTGTTATTGGGTGGCTGTGCTACCGCTAGTGTTGTTGTAAATCATGCTCATGAGACTACTAGCTGTGGTTTTGGTGGTGGTTCTGGATCTGGTTCGAGTAGTGCTACTACTGCGGCGGCCATGTCCACGTGTGTTTACGGTGGCGGTGTGAGTCCACAGCCCATGAATTGCCTGCAGGTCTCTCATAGTCACCATGATCAACTAGTCCAGCCTTGGGGTGGTCCTCCCTCTCGCCCTCCTCTTCCTCCTCATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

340

Amino Acids

34.95

Weight (kDa)

7.71

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 112 - 224 4.1e-18 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 531, 931
AccB1I GGYRCC 1 cut(s) 490
AccII CGCG 3 cut(s) 392, 394, 485
AciI CCGC 7 cut(s) 15, 177, 638, 789, 878, 881, 909
AclWI GGATC 4 cut(s) 208, 547, 598, 859
AcoI YGGCCR 3 cut(s) 16, 84, 882
AcuI CTGAAG 1 cut(s) 136
AcvI CACGTG 1 cut(s) 894
AcyI GRCGYC 2 cut(s) 460, 491
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 487, 979, 983
AflIII ACRYGT 1 cut(s) 893
AgeI ACCGGT 1 cut(s) 145
AhlI ACTAGT 1 cut(s) 967
AjnI CCWGG 6 cut(s) 18, 125, 378, 600, 627, 706
AluBI AGCT 4 cut(s) 139, 172, 215, 828
AluI AGCT 4 cut(s) 139, 172, 215, 828
Alw26I GTCTC 4 cut(s) 283, 445, 812, 949
AlwI GGATC 4 cut(s) 208, 547, 598, 859
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 9 cut(s) 16, 22, 84, 284, 512, 598, 625, 703, 882
ApeKI GCWGC 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 3 cut(s) 394, 487, 493
AspS9I GGNCC 4 cut(s) 22, 512, 704, 986
AsuC2I CCSGG 3 cut(s) 269, 270, 358
AsuHPI GGTGA 5 cut(s) 145, 195, 352, 734, 947
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 986
AvrII CCTAGG 1 cut(s) 680
BanI GGYRCC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 894
BbsI GAAGAC 3 cut(s) 142, 268, 406
BbvI GCAGC 1 cut(s) 649
BccI CCATC 1 cut(s) 223
BceAI ACGGC 3 cut(s) 28, 419, 499
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 6 cut(s) 20, 127, 380, 602, 629, 708
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 2 cut(s) 303, 961
BcnI CCSGG 3 cut(s) 269, 270, 358
BcoDI GTCTC 4 cut(s) 283, 445, 812, 949
BcuI ACTAGT 1 cut(s) 967
BfaI CTAG 7 cut(s) 407, 681, 717, 792, 825, 968, 1021
BfmI CTRYAG 1 cut(s) 938
BfoI RGCGCY 1 cut(s) 494
BfuAI ACCTGC 2 cut(s) 531, 931
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 348
BisI GCNGC 6 cut(s) 16, 178, 639, 663, 879, 882
BlnI CCTAGG 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 6 cut(s) 17, 179, 640, 664, 880, 883
Bme1390I CCNGG 9 cut(s) 20, 127, 269, 270, 358, 380, 602, 629, 708
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 4 cut(s) 22, 512, 704, 986
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 9 cut(s) 20, 127, 269, 270, 358, 380, 602, 629, 708
BpiI GAAGAC 3 cut(s) 142, 268, 406
BpmI CTGGAG 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 3 cut(s) 269, 270, 358
BsaAI YACGTR 1 cut(s) 894
BsaBI GATNNNNATC 2 cut(s) 302, 347
BsaHI GRCGYC 2 cut(s) 460, 491
BsaI GGTCTC 3 cut(s) 283, 445, 949
BsaJI CCNNGG 7 cut(s) 19, 126, 267, 268, 680, 706, 977
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 305, 335, 603, 615, 633, 645
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 979, 983
Bse118I RCCGGY 5 cut(s) 86, 145, 487, 493, 697
Bse1I ACTGG 1 cut(s) 472
Bse8I GATNNNNATC 2 cut(s) 302, 347
BseBI CCWGG 6 cut(s) 20, 127, 380, 602, 629, 708
BseDI CCNNGG 7 cut(s) 19, 126, 267, 268, 680, 706, 977
BseGI GGATG 2 cut(s) 122, 370
BseJI GATNNNNATC 2 cut(s) 302, 347
BseLI CCNNNNNNNGG 3 cut(s) 487, 979, 983
BseMII CTCAG 2 cut(s) 541, 761
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 993, 1002
BseXI GCAGC 1 cut(s) 649
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 404
Bsh1236I CGCG 3 cut(s) 392, 394, 485
BshFI GGCC 9 cut(s) 18, 24, 86, 286, 514, 600, 627, 705, 884
BshNI GGYRCC 1 cut(s) 490
BshTI ACCGGT 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 7 cut(s) 87, 146, 269, 357, 488, 494, 698
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 487, 979, 983
BsmAI GTCTC 4 cut(s) 283, 445, 812, 949
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 9 cut(s) 18, 24, 86, 286, 514, 600, 627, 705, 884
Bso31I GGTCTC 3 cut(s) 283, 445, 949
BsoBI CYCGRG 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 275
Bsp143I GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 7 cut(s) 15, 177, 638, 789, 878, 881, 909
BspANI GGCC 9 cut(s) 18, 24, 86, 286, 514, 600, 627, 705, 884
BspCNI CTCAG 2 cut(s) 540, 760
BspFNI CGCG 3 cut(s) 392, 394, 485
BspHI TCATGA 2 cut(s) 166, 814
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 942
BspMI ACCTGC 2 cut(s) 531, 931
BspPI GGATC 4 cut(s) 208, 547, 598, 859
BspT104I TTCGAA 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 3 cut(s) 283, 445, 949
BsrFI RCCGGY 5 cut(s) 86, 145, 487, 493, 697
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 5 cut(s) 86, 145, 487, 493, 697
BssECI CCNNGG 7 cut(s) 19, 126, 267, 268, 680, 706, 977
BssMI GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
BssNI GRCGYC 2 cut(s) 460, 491
BssT1I CCWWGG 2 cut(s) 680, 977
Bst2UI CCWGG 6 cut(s) 20, 127, 380, 602, 629, 708
Bst4CI ACNGT 2 cut(s) 418, 905
Bst6I CTCTTC 2 cut(s) 190, 1011
BstACI GRCGYC 2 cut(s) 460, 491
BstBAI YACGTR 1 cut(s) 894
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 7 cut(s) 88, 329, 489, 495, 699, 703, 938
BstDEI CTNAG 5 cut(s) 173, 422, 527, 747, 756
BstF5I GGATG 2 cut(s) 122, 370
BstFNI CGCG 3 cut(s) 392, 394, 485
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 3 cut(s) 394, 487, 493
BstKTI GATC 8 cut(s) 203, 306, 345, 351, 542, 593, 854, 964
BstMAI GTCTC 4 cut(s) 283, 445, 812, 949
BstMBI GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
BstMWI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 391, 511, 875
BstNI CCWGG 6 cut(s) 20, 127, 380, 602, 629, 708
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 9 cut(s) 18, 125, 267, 268, 356, 378, 600, 627, 706
BstSFI CTRYAG 1 cut(s) 938
BstUI CGCG 3 cut(s) 392, 394, 485
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 3 cut(s) 142, 268, 406
BstX2I RGATCY 2 cut(s) 348, 851
BstXI CCANNNNNNTGG 2 cut(s) 82, 608
BstYI RGATCY 2 cut(s) 348, 851
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 9 cut(s) 18, 24, 86, 286, 514, 600, 627, 705, 884
BtsCI GGATG 2 cut(s) 122, 370
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 2 cut(s) 531, 931
Cac8I GCNNGC 7 cut(s) 88, 329, 489, 495, 699, 703, 938
CciI TCATGA 2 cut(s) 166, 814
CfoI GCGC 3 cut(s) 394, 487, 493
Cfr10I RCCGGY 5 cut(s) 86, 145, 487, 493, 697
Cfr13I GGNCC 4 cut(s) 22, 512, 704, 986
Cfr9I CCCGGG 1 cut(s) 268
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 388
CspAI ACCGGT 1 cut(s) 145
CviAII CATG 8 cut(s) 82, 167, 328, 809, 815, 886, 928, 959
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 5 cut(s) 173, 422, 527, 747, 756
DinI GGCGCC 1 cut(s) 492
DpnI GATC 8 cut(s) 202, 305, 344, 350, 541, 592, 853, 963
DpnII GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
EaeI YGGCCR 3 cut(s) 16, 84, 882
Eam1104I CTCTTC 2 cut(s) 190, 1011
EarI CTCTTC 2 cut(s) 190, 1011
Eco130I CCWWGG 2 cut(s) 680, 977
Eco31I GGTCTC 3 cut(s) 283, 445, 949
Eco47I GGWCC 1 cut(s) 986
Eco57I CTGAAG 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 22
EcoRII CCWGG 6 cut(s) 18, 125, 378, 600, 627, 706
EcoT14I CCWWGG 2 cut(s) 680, 977
EgeI GGCGCC 1 cut(s) 492
EheI GGCGCC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 680, 977
FaeI CATG 8 cut(s) 85, 170, 331, 812, 818, 889, 931, 962
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 460
FatI CATG 8 cut(s) 81, 166, 327, 808, 814, 885, 927, 958
FbaI TGATCA 2 cut(s) 303, 961
Fnu4HI GCNGC 6 cut(s) 16, 178, 639, 663, 879, 882
FokI GGATG 2 cut(s) 109, 377
Fsp4HI GCNGC 6 cut(s) 16, 178, 639, 663, 879, 882
FspBI CTAG 7 cut(s) 407, 681, 717, 792, 825, 968, 1021
GlaI GCGC 3 cut(s) 393, 486, 492
GluI GCNGC 6 cut(s) 16, 178, 639, 663, 879, 882
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 9 cut(s) 18, 24, 86, 286, 514, 600, 627, 705, 884
HapII CCGG 7 cut(s) 87, 146, 269, 357, 488, 494, 698
HgaI GACGC 1 cut(s) 468
HhaI GCGC 3 cut(s) 394, 487, 493
Hin1I GRCGYC 2 cut(s) 460, 491
Hin1II CATG 8 cut(s) 85, 170, 331, 812, 818, 889, 931, 962
Hin6I GCGC 3 cut(s) 392, 485, 491
HinP1I GCGC 3 cut(s) 392, 485, 491
HinfI GANTC 7 cut(s) 59, 314, 320, 551, 643, 728, 916
HpaII CCGG 7 cut(s) 87, 146, 269, 357, 488, 494, 698
HphI GGTGA 5 cut(s) 145, 195, 352, 734, 947
Hpy166II GTNNAC 3 cut(s) 891, 901, 920
Hpy188I TCNGA 9 cut(s) 49, 64, 155, 297, 319, 364, 458, 623, 733
Hpy188III TCNNGA 6 cut(s) 167, 346, 537, 749, 815, 849
Hpy8I GTNNAC 3 cut(s) 891, 901, 920
Hpy99I CGWCG 3 cut(s) 53, 56, 462
HpyAV CCTTC 1 cut(s) 771
HpyCH4III ACNGT 2 cut(s) 418, 905
HpyCH4IV ACGT 1 cut(s) 893
HpyCH4V TGCA 3 cut(s) 331, 385, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 391, 511, 875
HpyF3I CTNAG 5 cut(s) 173, 422, 527, 747, 756
HpySE526I ACGT 1 cut(s) 893
Hsp92I GRCGYC 2 cut(s) 460, 491
Hsp92II CATG 8 cut(s) 85, 170, 331, 812, 818, 889, 931, 962
HspAI GCGC 3 cut(s) 392, 485, 491
KasI GGCGCC 1 cut(s) 490
KroI GCCGGC 4 cut(s) 86, 487, 493, 697
KroNI GCCGGC 4 cut(s) 88, 489, 495, 699
Ksp22I TGATCA 2 cut(s) 303, 961
Kzo9I GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 649
MaeI CTAG 7 cut(s) 407, 681, 717, 792, 825, 968, 1021
MaeII ACGT 1 cut(s) 893
MaeIII GTNAC 2 cut(s) 448, 953
MalI GATC 8 cut(s) 202, 305, 344, 350, 541, 592, 853, 963
MboI GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
MboII GAAGA 6 cut(s) 142, 207, 273, 289, 411, 998
MflI RGATCY 2 cut(s) 348, 851
MluCI AATT 1 cut(s) 931
Mly113I GGCGCC 1 cut(s) 491
MlyI GAGTC 5 cut(s) 53, 323, 329, 652, 925
MmeI TCCRAC 6 cut(s) 72, 87, 297, 342, 481, 601
MreI CGCCGGCG 1 cut(s) 487
MroNI GCCGGC 4 cut(s) 86, 487, 493, 697
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 813
MspI CCGG 7 cut(s) 87, 146, 269, 357, 488, 494, 698
MspR9I CCNGG 9 cut(s) 20, 127, 269, 270, 358, 380, 602, 629, 708
MvaI CCWGG 6 cut(s) 20, 127, 380, 602, 629, 708
MvnI CGCG 3 cut(s) 392, 394, 485
MwoI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 391, 511, 875
NaeI GCCGGC 4 cut(s) 88, 489, 495, 699
NarI GGCGCC 1 cut(s) 491
NciI CCSGG 3 cut(s) 269, 270, 358
NdeII GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
NgoMIV GCCGGC 4 cut(s) 86, 487, 493, 697
NlaIII CATG 8 cut(s) 85, 170, 331, 812, 818, 889, 931, 962
NlaIV GGNNCC 1 cut(s) 492
NmeAIII GCCGAG 2 cut(s) 279, 312
NmuCI GTSAC 2 cut(s) 448, 953
NspI RCATGY 1 cut(s) 331
NspV TTCGAA 1 cut(s) 275
PaeI GCATGC 1 cut(s) 331
PagI TCATGA 2 cut(s) 166, 814
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 4 cut(s) 88, 489, 495, 699
PfeI GAWTC 2 cut(s) 551, 728
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 6 cut(s) 17, 179, 640, 664, 880, 883
PleI GAGTC 5 cut(s) 53, 322, 328, 651, 924
PluTI GGCGCC 1 cut(s) 494
PmaCI CACGTG 1 cut(s) 894
PmlI CACGTG 1 cut(s) 894
PpsI GAGTC 5 cut(s) 53, 322, 328, 651, 924
Ppu21I YACGTR 1 cut(s) 894
Psp6I CCWGG 6 cut(s) 18, 125, 378, 600, 627, 706
PspCI CACGTG 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 6 cut(s) 18, 125, 378, 600, 627, 706
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 4 cut(s) 22, 512, 704, 986
PstI CTGCAG 1 cut(s) 942
PsuI RGATCY 2 cut(s) 348, 851
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 813
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 6 cut(s) 16, 178, 639, 663, 879, 882
Sau3AI GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
Sau96I GGNCC 4 cut(s) 22, 512, 704, 986
SbfI CCTGCAGG 1 cut(s) 942
SchI GAGTC 5 cut(s) 53, 323, 329, 652, 925
ScrFI CCNGG 9 cut(s) 20, 127, 269, 270, 358, 380, 602, 629, 708
SdaI CCTGCAGG 1 cut(s) 942
SfcI CTRYAG 1 cut(s) 938
SfoI GGCGCC 1 cut(s) 492
SfuI TTCGAA 1 cut(s) 275
SgrAI CRCCGGYG 1 cut(s) 487
SinI GGWCC 1 cut(s) 986
SmaI CCCGGG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SpeI ACTAGT 1 cut(s) 967
SphI GCATGC 1 cut(s) 331
Sse8387I CCTGCAGG 1 cut(s) 942
Sse9I AATT 1 cut(s) 931
SsiI CCGC 7 cut(s) 15, 177, 638, 789, 878, 881, 909
SspDI GGCGCC 1 cut(s) 490
SspMI CTAG 7 cut(s) 407, 681, 717, 792, 825, 968, 1021
StyD4I CCNGG 9 cut(s) 18, 125, 267, 268, 356, 378, 600, 627, 706
StyI CCWWGG 2 cut(s) 680, 977
TaaI ACNGT 2 cut(s) 418, 905
TaiI ACGT 1 cut(s) 896
TaqI TCGA 5 cut(s) 141, 242, 275, 345, 860
TaqII GACCGA 1 cut(s) 427
TasI AATT 1 cut(s) 931
TauI GCSGC 5 cut(s) 18, 180, 641, 881, 884
TfiI GAWTC 2 cut(s) 551, 728
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 2 cut(s) 448, 953
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 2 cut(s) 448, 953
TspDTI ATGAA 2 cut(s) 741, 944
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 986
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XmaI CCCGGG 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 680
XspI CTAG 7 cut(s) 407, 681, 717, 792, 825, 968, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.