RLG00000034711

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016798
Physical Location & Seq
Reverse (-)
52667532 .. 52668542
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034711

Sequence Viewer

Length: 1011 bp
ATGGCAGACTACGGCGGCCAGGGCCTAAACTTCTCTGCTCTCAACTCCGACGACGATGACTCCGACCACAGCCCCAAGAGCACGGCCGGCGCTTGTGGTGGAAAATCATCATCATCATCATCCAGGGTGGTGAAGCTCGAACCGGTTTTCAGAAGTCCTCATCAGCTTAGCGGCGTGGAGTTGAGAGGAAGAGGATCACCAAGTAGAGCTGCGGAGATGATGATGGTGGCAAGTTCGAGCAGGAAGCCGAGAGGAAGACCCCCGGGTTCGAAGAACAGGCCGAGACCTCCGATTGTGATCAACAAGGAGTCCGAGTCGGGCATGCAGTCAGTGGTGATCGAGATCTCTGCTGGGTCGGATGTGGTGGAGAGCCTGGTGCAGTACGCGCGTAGAAGACGGGTAGGGATTACCGTGCTCAGTGGTTGTGGCTCGGTCTCAAGCGTGACACTCCGACGCCCTTTGCTCCAGTCCCACCACGCGCCGGCGCCTGCTATGTCGCTTCACGGGCCGTTTAACCTGCTCAGTCTGTCGGGATCGTTTATGGAATCTCTCGCTACTTGTTCCTTTGGAATATCTCTGGCAGGATCACAAGGCCAGGTGTTTGGAGGGATTGTCGGAGGCCAGGTCATAGCGGCGAGTCTGGTTGTGGTTGTGGCTGCCACTTTTCGCAATCCTAGGTTTCACAAGTTGCCGGCTGGCCTTGCTAGTGGTGATGAATCTGATGATGATGATACTCAGGATACTAAGCCTTCCTTGTTATTGGGTGGCTGTGCTACCGGTAATGTTGTTGTAAATCATGCTCATGAGACTACTAGCTGTGGTTTTGGTGGTGGTTCTGGATCTGGTTCGAGTAGTGCTACTACTGCGGCGGCGATGTCCACGTGTGTTTACGGTGGCGGTGTGAGTCCACAGCCCATGAATTGCCTGCAGGTCTCTCATAGTCACCATGATCAACTAGTCCAGCCTTGGGGTGGTCCTCCCTCTCGCCCTCCTCTTCCTCCTCATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

337

Amino Acids

34.57

Weight (kDa)

8.5

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 110 - 223 2e-18 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 525, 919
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 3 cut(s) 386, 388, 479
AciI CCGC 7 cut(s) 15, 171, 212, 632, 866, 869, 897
AclWI GGATC 4 cut(s) 202, 541, 592, 847
AcoI YGGCCR 2 cut(s) 16, 84
AcvI CACGTG 1 cut(s) 882
AcyI GRCGYC 2 cut(s) 454, 485
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 481, 967, 971
AflIII ACRYGT 1 cut(s) 881
AgeI ACCGGT 2 cut(s) 142, 776
AhlI ACTAGT 1 cut(s) 955
AjnI CCWGG 5 cut(s) 18, 122, 372, 594, 621
AluBI AGCT 4 cut(s) 136, 166, 209, 816
AluI AGCT 4 cut(s) 136, 166, 209, 816
Alw21I GWGCWC 2 cut(s) 83, 417
Alw26I GTCTC 4 cut(s) 277, 439, 800, 937
AlwI GGATC 4 cut(s) 202, 541, 592, 847
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 8 cut(s) 16, 22, 84, 278, 506, 592, 619, 697
ApeKI GCWGC 2 cut(s) 209, 656
AsiGI ACCGGT 2 cut(s) 142, 776
AspA2I CCTAGG 1 cut(s) 674
AspLEI GCGC 4 cut(s) 92, 388, 481, 487
AspS9I GGNCC 3 cut(s) 22, 506, 974
AsuC2I CCSGG 2 cut(s) 263, 264
AsuHPI GGTGA 5 cut(s) 142, 189, 346, 722, 935
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 974
AvrII CCTAGG 1 cut(s) 674
BanI GGYRCC 1 cut(s) 484
BbrPI CACGTG 1 cut(s) 882
BbsI GAAGAC 2 cut(s) 262, 400
Bbv12I GWGCWC 2 cut(s) 83, 417
BbvI GCAGC 2 cut(s) 196, 643
BccI CCATC 1 cut(s) 217
BceAI ACGGC 3 cut(s) 28, 99, 493
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 5 cut(s) 20, 124, 374, 596, 623
BciVI GTATCC 1 cut(s) 733
BclI TGATCA 2 cut(s) 297, 949
BcnI CCSGG 2 cut(s) 263, 264
BcoDI GTCTC 4 cut(s) 277, 439, 800, 937
BcuI ACTAGT 1 cut(s) 955
BfaI CTAG 5 cut(s) 675, 705, 813, 956, 1009
BfmI CTRYAG 1 cut(s) 926
BfoI RGCGCY 2 cut(s) 93, 488
BfuAI ACCTGC 2 cut(s) 525, 919
BfuI GTATCC 1 cut(s) 733
BglII AGATCT 1 cut(s) 342
BisI GCNGC 7 cut(s) 16, 172, 210, 633, 657, 867, 870
BlnI CCTAGG 1 cut(s) 674
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 7 cut(s) 17, 173, 211, 634, 658, 868, 871
Bme1390I CCNGG 7 cut(s) 20, 124, 263, 264, 374, 596, 623
Bme18I GGWCC 1 cut(s) 974
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 22, 506, 974
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 7 cut(s) 20, 124, 263, 264, 374, 596, 623
BpiI GAAGAC 2 cut(s) 262, 400
BpmI CTGGAG 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 421
BpuMI CCSGG 2 cut(s) 263, 264
BsaAI YACGTR 1 cut(s) 882
BsaBI GATNNNNATC 2 cut(s) 296, 341
BsaHI GRCGYC 2 cut(s) 454, 485
BsaI GGTCTC 3 cut(s) 277, 439, 937
BsaJI CCNNGG 6 cut(s) 19, 123, 261, 262, 674, 965
BsaWI WCCGGW 2 cut(s) 142, 776
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 299, 329, 597, 609, 627, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 967, 971
Bse118I RCCGGY 5 cut(s) 86, 142, 481, 691, 776
Bse1I ACTGG 1 cut(s) 466
Bse8I GATNNNNATC 2 cut(s) 296, 341
BseBI CCWGG 5 cut(s) 20, 124, 374, 596, 623
BseDI CCNNGG 6 cut(s) 19, 123, 261, 262, 674, 965
BseGI GGATG 2 cut(s) 119, 364
BseJI GATNNNNATC 2 cut(s) 296, 341
BseLI CCNNNNNNNGG 3 cut(s) 481, 967, 971
BseMII CTCAG 3 cut(s) 430, 535, 749
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 2 cut(s) 981, 990
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 196, 643
BseYI CCCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 3 cut(s) 386, 388, 479
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 8 cut(s) 18, 24, 86, 280, 508, 594, 621, 699
BshNI GGYRCC 1 cut(s) 484
BshTI ACCGGT 2 cut(s) 142, 776
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 83, 417
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 6 cut(s) 87, 143, 263, 482, 692, 777
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 3 cut(s) 481, 967, 971
BsmAI GTCTC 4 cut(s) 277, 439, 800, 937
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 8 cut(s) 18, 24, 86, 280, 508, 594, 621, 699
Bso31I GGTCTC 3 cut(s) 277, 439, 937
BsoBI CYCGRG 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 83, 417
Bsp143I GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 7 cut(s) 15, 171, 212, 632, 866, 869, 897
BspANI GGCC 8 cut(s) 18, 24, 86, 280, 508, 594, 621, 699
BspCNI CTCAG 3 cut(s) 429, 534, 748
BspFNI CGCG 3 cut(s) 386, 388, 479
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 930
BspMI ACCTGC 2 cut(s) 525, 919
BspPI GGATC 4 cut(s) 202, 541, 592, 847
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 484
BspTNI GGTCTC 3 cut(s) 277, 439, 937
BsrFI RCCGGY 5 cut(s) 86, 142, 481, 691, 776
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 5 cut(s) 86, 142, 481, 691, 776
BssECI CCNNGG 6 cut(s) 19, 123, 261, 262, 674, 965
BssMI GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
BssNI GRCGYC 2 cut(s) 454, 485
BssT1I CCWWGG 2 cut(s) 674, 965
Bst2UI CCWGG 5 cut(s) 20, 124, 374, 596, 623
Bst4CI ACNGT 2 cut(s) 412, 893
Bst6I CTCTTC 2 cut(s) 184, 999
BstACI GRCGYC 2 cut(s) 454, 485
BstBAI YACGTR 1 cut(s) 882
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 7 cut(s) 88, 323, 483, 489, 693, 697, 926
BstDEI CTNAG 5 cut(s) 167, 416, 521, 735, 744
BstF5I GGATG 2 cut(s) 119, 364
BstFNI CGCG 3 cut(s) 386, 388, 479
BstH2I RGCGCY 2 cut(s) 93, 488
BstHHI GCGC 4 cut(s) 92, 388, 481, 487
BstKTI GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 842, 952
BstMAI GTCTC 4 cut(s) 277, 439, 800, 937
BstMBI GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 7 cut(s) 21, 78, 87, 385, 505, 701, 863
BstNI CCWGG 5 cut(s) 20, 124, 374, 596, 623
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 7 cut(s) 18, 122, 261, 262, 372, 594, 621
BstSFI CTRYAG 1 cut(s) 926
BstUI CGCG 3 cut(s) 386, 388, 479
BstV1I GCAGC 2 cut(s) 196, 643
BstV2I GAAGAC 2 cut(s) 262, 400
BstX2I RGATCY 2 cut(s) 342, 839
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 2 cut(s) 342, 839
BstZI CGGCCG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 8 cut(s) 18, 24, 86, 280, 508, 594, 621, 699
BtgZI GCGATG 1 cut(s) 887
BtsCI GGATG 2 cut(s) 119, 364
BtsIMutI CAGTG 2 cut(s) 336, 424
BveI ACCTGC 2 cut(s) 525, 919
Cac8I GCNNGC 7 cut(s) 88, 323, 483, 489, 693, 697, 926
CciI TCATGA 1 cut(s) 802
CfoI GCGC 4 cut(s) 92, 388, 481, 487
Cfr10I RCCGGY 5 cut(s) 86, 142, 481, 691, 776
Cfr13I GGNCC 3 cut(s) 22, 506, 974
Cfr9I CCCGGG 1 cut(s) 262
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 382
CspAI ACCGGT 2 cut(s) 142, 776
CviAII CATG 5 cut(s) 322, 797, 803, 916, 947
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 5 cut(s) 167, 416, 521, 735, 744
DinI GGCGCC 1 cut(s) 486
DpnI GATC 8 cut(s) 196, 299, 338, 344, 535, 586, 841, 951
DpnII GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
EaeI YGGCCR 2 cut(s) 16, 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 184, 999
EarI CTCTTC 2 cut(s) 184, 999
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 674, 965
Eco31I GGTCTC 3 cut(s) 277, 439, 937
Eco47I GGWCC 1 cut(s) 974
Eco52I CGGCCG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 882
Eco88I CYCGRG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 22
EcoRII CCWGG 5 cut(s) 18, 122, 372, 594, 621
EcoT14I CCWWGG 2 cut(s) 674, 965
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 674, 965
FaeI CATG 5 cut(s) 325, 800, 806, 919, 950
FaiI YATR 9 cut(s) 323, 494, 542, 629, 798, 804, 917, 939, 948
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 1 cut(s) 454
FatI CATG 5 cut(s) 321, 796, 802, 915, 946
FbaI TGATCA 2 cut(s) 297, 949
Fnu4HI GCNGC 7 cut(s) 16, 172, 210, 633, 657, 867, 870
FokI GGATG 2 cut(s) 106, 371
Fsp4HI GCNGC 7 cut(s) 16, 172, 210, 633, 657, 867, 870
FspBI CTAG 5 cut(s) 675, 705, 813, 956, 1009
GlaI GCGC 4 cut(s) 91, 387, 480, 486
GluI GCNGC 7 cut(s) 16, 172, 210, 633, 657, 867, 870
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 449
HaeII RGCGCY 2 cut(s) 93, 488
HaeIII GGCC 8 cut(s) 18, 24, 86, 280, 508, 594, 621, 699
HapII CCGG 6 cut(s) 87, 143, 263, 482, 692, 777
HgaI GACGC 1 cut(s) 462
HhaI GCGC 4 cut(s) 92, 388, 481, 487
Hin1I GRCGYC 2 cut(s) 454, 485
Hin1II CATG 5 cut(s) 325, 800, 806, 919, 950
Hin6I GCGC 4 cut(s) 90, 386, 479, 485
HinP1I GCGC 4 cut(s) 90, 386, 479, 485
HinfI GANTC 7 cut(s) 59, 308, 314, 545, 637, 716, 904
HpaII CCGG 6 cut(s) 87, 143, 263, 482, 692, 777
HphI GGTGA 5 cut(s) 142, 189, 346, 722, 935
Hpy166II GTNNAC 3 cut(s) 879, 889, 908
Hpy188I TCNGA 9 cut(s) 49, 64, 152, 291, 313, 358, 452, 617, 721
Hpy188III TCNNGA 5 cut(s) 340, 531, 737, 803, 837
Hpy8I GTNNAC 3 cut(s) 879, 889, 908
Hpy99I CGWCG 3 cut(s) 53, 56, 456
HpyAV CCTTC 1 cut(s) 759
HpyCH4III ACNGT 2 cut(s) 412, 893
HpyCH4IV ACGT 1 cut(s) 881
HpyCH4V TGCA 3 cut(s) 325, 379, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 78, 87, 385, 505, 701, 863
HpyF3I CTNAG 5 cut(s) 167, 416, 521, 735, 744
HpySE526I ACGT 1 cut(s) 881
Hsp92I GRCGYC 2 cut(s) 454, 485
Hsp92II CATG 5 cut(s) 325, 800, 806, 919, 950
HspAI GCGC 4 cut(s) 90, 386, 479, 485
KasI GGCGCC 1 cut(s) 484
KroI GCCGGC 3 cut(s) 86, 481, 691
KroNI GCCGGC 3 cut(s) 88, 483, 693
Ksp22I TGATCA 2 cut(s) 297, 949
Kzo9I GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
LmnI GCTCC 1 cut(s) 468
Lsp1109I GCAGC 2 cut(s) 196, 643
MaeI CTAG 5 cut(s) 675, 705, 813, 956, 1009
MaeII ACGT 1 cut(s) 881
MaeIII GTNAC 2 cut(s) 442, 941
MalI GATC 8 cut(s) 196, 299, 338, 344, 535, 586, 841, 951
MboI GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
MboII GAAGA 5 cut(s) 201, 267, 283, 405, 986
MflI RGATCY 2 cut(s) 342, 839
MhlI GDGCHC 2 cut(s) 83, 417
MluCI AATT 1 cut(s) 919
Mly113I GGCGCC 1 cut(s) 485
MlyI GAGTC 5 cut(s) 53, 317, 323, 646, 913
MmeI TCCRAC 5 cut(s) 72, 87, 336, 475, 595
MreI CGCCGGCG 1 cut(s) 481
MroNI GCCGGC 3 cut(s) 86, 481, 691
MseI TTAA 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 801
MspI CCGG 6 cut(s) 87, 143, 263, 482, 692, 777
MspR9I CCNGG 7 cut(s) 20, 124, 263, 264, 374, 596, 623
MvaI CCWGG 5 cut(s) 20, 124, 374, 596, 623
MvnI CGCG 3 cut(s) 386, 388, 479
MwoI GCNNNNNNNGC 7 cut(s) 21, 78, 87, 385, 505, 701, 863
NaeI GCCGGC 3 cut(s) 88, 483, 693
NarI GGCGCC 1 cut(s) 485
NciI CCSGG 2 cut(s) 263, 264
NdeII GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
NgoMIV GCCGGC 3 cut(s) 86, 481, 691
NlaIII CATG 5 cut(s) 325, 800, 806, 919, 950
NlaIV GGNNCC 1 cut(s) 486
NmeAIII GCCGAG 2 cut(s) 273, 306
NmuCI GTSAC 2 cut(s) 442, 941
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 1 cut(s) 269
PaeI GCATGC 1 cut(s) 325
PagI TCATGA 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 3 cut(s) 88, 483, 693
PfeI GAWTC 2 cut(s) 545, 716
PinAI ACCGGT 2 cut(s) 142, 776
PkrI GCNGC 7 cut(s) 17, 173, 211, 634, 658, 868, 871
PleI GAGTC 5 cut(s) 53, 316, 322, 645, 912
PluTI GGCGCC 1 cut(s) 488
PmaCI CACGTG 1 cut(s) 882
PmlI CACGTG 1 cut(s) 882
PpsI GAGTC 5 cut(s) 53, 316, 322, 645, 912
Ppu21I YACGTR 1 cut(s) 882
Psp6I CCWGG 5 cut(s) 18, 122, 372, 594, 621
PspCI CACGTG 1 cut(s) 882
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 5 cut(s) 18, 122, 372, 594, 621
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 3 cut(s) 22, 506, 974
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 2 cut(s) 342, 839
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 801
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 7 cut(s) 16, 172, 210, 633, 657, 867, 870
Sau3AI GATC 8 cut(s) 194, 297, 336, 342, 533, 584, 839, 949
Sau96I GGNCC 3 cut(s) 22, 506, 974
SbfI CCTGCAGG 1 cut(s) 930
SchI GAGTC 5 cut(s) 53, 317, 323, 646, 913
ScrFI CCNGG 7 cut(s) 20, 124, 263, 264, 374, 596, 623
SdaI CCTGCAGG 1 cut(s) 930
SduI GDGCHC 2 cut(s) 83, 417
SfcI CTRYAG 1 cut(s) 926
SfoI GGCGCC 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 269
SgrAI CRCCGGYG 1 cut(s) 481
SinI GGWCC 1 cut(s) 974
SmaI CCCGGG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 955
SphI GCATGC 1 cut(s) 325
Sse8387I CCTGCAGG 1 cut(s) 930
Sse9I AATT 1 cut(s) 919
SsiI CCGC 7 cut(s) 15, 171, 212, 632, 866, 869, 897
SspDI GGCGCC 1 cut(s) 484
SspMI CTAG 5 cut(s) 675, 705, 813, 956, 1009
StyD4I CCNGG 7 cut(s) 18, 122, 261, 262, 372, 594, 621
StyI CCWWGG 2 cut(s) 674, 965
TaaI ACNGT 2 cut(s) 412, 893
TaiI ACGT 1 cut(s) 884
TaqI TCGA 5 cut(s) 138, 236, 269, 339, 848
TaqII GACCGA 1 cut(s) 421
TasI AATT 1 cut(s) 919
TauI GCSGC 5 cut(s) 18, 174, 635, 869, 872
TfiI GAWTC 2 cut(s) 545, 716
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 2 cut(s) 336, 424
TseFI GTSAC 2 cut(s) 442, 941
TseI GCWGC 2 cut(s) 209, 656
Tsp45I GTSAC 2 cut(s) 442, 941
TspDTI ATGAA 2 cut(s) 729, 932
TspMI CCCGGG 1 cut(s) 262
TspRI CASTG 2 cut(s) 336, 424
VpaK11BI GGWCC 1 cut(s) 974
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmaI CCCGGG 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 674
XspI CTAG 5 cut(s) 675, 705, 813, 956, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.