Prupe.4G266900_v2.0.a1

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016798
Physical Location & Seq
Reverse (-)
20020558 .. 20021945
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G266900.1

Sequence Viewer

Length: 945 bp
ATGGCGGCAGACTATGGTGGAGGTGTTCGTGCAATTTCTCTCTCGCAAGGCGGCAGAAACTCCGACGACGACGACGGCTCCTCCCAGCATAGCCCCCGGAGCGCGAGTGGGGGCGTCGTCGTTGTGGGAGGCGGCTCTTCCTCGTCCAAGTCAAAGTTTGTGTCACCGTCAGGTGAGATTATCATGTCGAAGAAGCCGAGAGGAAGGCCGCCGGGTTCGAAGAACAAGCCCAAGCCCCCCATAGTCATCACCAAAAACTCCGAGGCCGCCATGAAGCCCGTCGTCCTCGAGATCTCCGCTGGCTCTGACGTCATCGAAGCCATCATCCAGTACGCCCGAAGGCGCCACGTGGGCATCAGCGTCTTGAGCGGTTCGGGGGCGGTCTCCAACGTTACCCTTGTACACCCAGCTGGGCCACACCACCACCCCAGCGCACCCTCTCTGCTGTCTCTTCTTCACGGGCCCTTCAACCTCCTCTCCCTCTCCGGCTCCTTCATGGACGCCGTCCCAGCAACAGCCACGTGCCCTTCCTCGGCTTCCTCGAAGGTGGCCACGTCAGCTGGGGGCTGTTCTTCGCCGGGTAGCGGGTCGTTTGGGATATGCCTGGCTGGGGCGCAGGGGCAGGTGTTTGGAGGGATTGTCGGAGGGAAGGTGGTGGCGGCGAGCGCTGTGGTGGTTGTGGGTGCCACCTTTGTGAATCCGACGGTGCTGAGGCTGCCTCTGCCTGGTGATGATCACGATGATCATGAAAATGGTGTTGAGGGTGGGGCTCCTGCTGCTGAGTATGAAGCTCAGGAGACGAAGCCTGGCGTTAATGTTGAGAGTCATTGTAGTGTTTACGGCGGCGGCGGCGGCGTTGCGAGCTCGACGCCTATGAATTGCCAGATCACAAGTGTTCCTGATCAAGTCATGCCTTGGGGTCCTCCCTCTCGCCCTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

315

Amino Acids

31.34

Weight (kDa)

7.14

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
AatII GACGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 2 cut(s) 342, 683
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 1 cut(s) 104
AclI AACGTT 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 549
AcvI CACGTG 2 cut(s) 349, 522
AcyI GRCGYC 5 cut(s) 114, 309, 343, 501, 869
AfaI GTAC 2 cut(s) 332, 402
AfeI AGCGCT 1 cut(s) 667
AfiI CCNNNNNNNGG 4 cut(s) 532, 584, 610, 725
AgsI TTSAA 1 cut(s) 469
AjiI CACGTC 1 cut(s) 555
AjnI CCWGG 3 cut(s) 603, 724, 805
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 4 cut(s) 410, 560, 791, 864
AluI AGCT 4 cut(s) 410, 560, 791, 864
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 3 cut(s) 388, 453, 791
Ama87I CYCGRG 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 667
AoxI GGCC 5 cut(s) 206, 264, 413, 461, 549
ApaI GGGCCC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 715, 776
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 5 cut(s) 104, 345, 434, 616, 668
AspS9I GGNCC 4 cut(s) 413, 461, 462, 920
AsuC2I CCSGG 3 cut(s) 97, 213, 579
AsuHPI GGTGA 4 cut(s) 156, 185, 241, 740
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 920
BaeGI GKGCMC 2 cut(s) 465, 527
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 2 cut(s) 342, 683
BanII GRGCYC 3 cut(s) 465, 772, 866
BbrPI CACGTG 2 cut(s) 349, 522
Bbv12I GWGCWC 1 cut(s) 866
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 702, 763
BccI CCATC 1 cut(s) 329
BceAI ACGGC 3 cut(s) 91, 488, 856
BciT130I CCWGG 3 cut(s) 605, 726, 807
BclI TGATCA 3 cut(s) 733, 742, 901
BcnI CCSGG 3 cut(s) 97, 213, 579
BcoDI GTCTC 3 cut(s) 388, 453, 791
BfoI RGCGCY 2 cut(s) 346, 669
BfuAI ACCTGC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 291
Bme1390I CCNGG 6 cut(s) 97, 213, 579, 605, 726, 807
Bme18I GGWCC 1 cut(s) 920
BmeT110I CYCGRG 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 555
BmgT120I GGNCC 4 cut(s) 413, 461, 462, 920
BmiI GGNNCC 7 cut(s) 79, 344, 463, 490, 685, 771, 921
BmrFI CCNGG 6 cut(s) 97, 213, 579, 605, 726, 807
BmsI GCATC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 2 cut(s) 710, 792
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 385
BpuMI CCSGG 3 cut(s) 97, 213, 579
BsaAI YACGTR 2 cut(s) 349, 522
BsaHI GRCGYC 5 cut(s) 114, 309, 343, 501, 869
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 4 cut(s) 95, 261, 531, 914
Bsc4I CCNNNNNNNGG 4 cut(s) 532, 584, 610, 725
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 3 cut(s) 605, 726, 807
BseDI CCNNGG 4 cut(s) 95, 261, 531, 914
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 4 cut(s) 532, 584, 610, 725
BseMII CTCAG 3 cut(s) 701, 771, 806
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 2 cut(s) 70, 464
BseSI GKGCMC 2 cut(s) 465, 527
BseXI GCAGC 2 cut(s) 702, 763
BseYI CCCAGC 7 cut(s) 84, 406, 410, 428, 508, 560, 608
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 5 cut(s) 208, 266, 415, 463, 551
BshNI GGYRCC 2 cut(s) 342, 683
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 4 cut(s) 97, 212, 486, 578
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 532, 584, 610, 725
BsmAI GTCTC 3 cut(s) 388, 453, 791
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 5 cut(s) 208, 266, 415, 463, 551
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 218
Bsp120I GGGCCC 1 cut(s) 461
Bsp1286I GDGCHC 4 cut(s) 465, 527, 772, 866
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 291, 733, 742, 885, 901
BspANI GGCC 5 cut(s) 208, 266, 415, 463, 551
BspCNI CTCAG 3 cut(s) 702, 772, 805
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 7 cut(s) 79, 344, 463, 490, 685, 771, 921
BspMI ACCTGC 1 cut(s) 613
BspQI GCTCTTC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 218
BspT107I GGYRCC 2 cut(s) 342, 683
BspTNI GGTCTC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 4 cut(s) 95, 261, 531, 914
BssMI GATC 5 cut(s) 291, 733, 742, 885, 901
BssNI GRCGYC 5 cut(s) 114, 309, 343, 501, 869
BssT1I CCWWGG 1 cut(s) 914
Bst2UI CCWGG 3 cut(s) 605, 726, 807
Bst4CI ACNGT 2 cut(s) 168, 706
Bst6I CTCTTC 2 cut(s) 142, 456
BstACI GRCGYC 5 cut(s) 114, 309, 343, 501, 869
BstAUI TGTACA 1 cut(s) 400
BstBAI YACGTR 2 cut(s) 349, 522
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 301, 664, 862
BstDEI CTNAG 3 cut(s) 710, 780, 792
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 2 cut(s) 346, 669
BstHHI GCGC 5 cut(s) 104, 345, 434, 616, 668
BstKTI GATC 5 cut(s) 294, 736, 745, 888, 904
BstMAI GTCTC 3 cut(s) 388, 453, 791
BstMBI GATC 5 cut(s) 291, 733, 742, 885, 901
BstNI CCWGG 3 cut(s) 605, 726, 807
BstSCI CCNGG 6 cut(s) 95, 211, 577, 603, 724, 805
BstSLI GKGCMC 2 cut(s) 465, 527
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 702, 763
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 5 cut(s) 208, 266, 415, 463, 551
BtrI CACGTC 1 cut(s) 555
BtsCI GGATG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 3 cut(s) 301, 664, 862
CciI TCATGA 1 cut(s) 745
CfoI GCGC 5 cut(s) 104, 345, 434, 616, 668
Cfr13I GGNCC 4 cut(s) 413, 461, 462, 920
CseI GACGC 4 cut(s) 103, 349, 509, 877
Csp6I GTAC 2 cut(s) 331, 401
CviAII CATG 5 cut(s) 184, 271, 496, 746, 910
CviQI GTAC 2 cut(s) 331, 401
DdeI CTNAG 3 cut(s) 710, 780, 792
DinI GGCGCC 1 cut(s) 344
DpnI GATC 5 cut(s) 293, 735, 744, 887, 903
DpnII GATC 5 cut(s) 291, 733, 742, 885, 901
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 142, 456
EarI CTCTTC 2 cut(s) 142, 456
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 914
Eco24I GRGCYC 3 cut(s) 465, 772, 866
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 920
Eco47III AGCGCT 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 864
Eco72I CACGTG 2 cut(s) 349, 522
Eco88I CYCGRG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 864
EcoO109I RGGNCCY 2 cut(s) 462, 920
EcoRII CCWGG 3 cut(s) 603, 724, 805
EcoT14I CCWWGG 1 cut(s) 914
EcoT38I GRGCYC 3 cut(s) 465, 772, 866
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 914
Esp3I CGTCTC 1 cut(s) 791
FaeI CATG 5 cut(s) 187, 274, 499, 749, 913
FaqI GGGAC 1 cut(s) 491
FatI CATG 5 cut(s) 183, 270, 495, 745, 909
FauI CCCGC 1 cut(s) 578
FbaI TGATCA 3 cut(s) 733, 742, 901
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 3 cut(s) 465, 772, 866
GlaI GCGC 5 cut(s) 103, 344, 433, 615, 667
GsaI CCCAGC 7 cut(s) 88, 410, 414, 432, 512, 564, 612
HaeII RGCGCY 2 cut(s) 346, 669
HaeIII GGCC 5 cut(s) 208, 266, 415, 463, 551
HapII CCGG 4 cut(s) 97, 212, 486, 578
HgaI GACGC 4 cut(s) 103, 349, 509, 877
HhaI GCGC 5 cut(s) 104, 345, 434, 616, 668
Hin1I GRCGYC 5 cut(s) 114, 309, 343, 501, 869
Hin1II CATG 5 cut(s) 187, 274, 499, 749, 913
Hin6I GCGC 5 cut(s) 102, 343, 432, 614, 666
HinP1I GCGC 5 cut(s) 102, 343, 432, 614, 666
HinfI GANTC 2 cut(s) 697, 823
HpaII CCGG 4 cut(s) 97, 212, 486, 578
HphI GGTGA 4 cut(s) 156, 185, 241, 740
Hpy166II GTNNAC 2 cut(s) 403, 838
Hpy188I TCNGA 5 cut(s) 64, 262, 307, 644, 702
Hpy188III TCNNGA 6 cut(s) 289, 364, 737, 746, 794, 899
Hpy8I GTNNAC 2 cut(s) 403, 838
Hpy99I CGWCG 9 cut(s) 68, 71, 74, 77, 119, 122, 284, 706, 871
HpyAV CCTTC 7 cut(s) 198, 333, 475, 502, 537, 538, 643
HpyCH4III ACNGT 2 cut(s) 168, 706
HpyCH4IV ACGT 5 cut(s) 309, 348, 390, 521, 554
HpyCH4V TGCA 1 cut(s) 32
HpyF3I CTNAG 3 cut(s) 710, 780, 792
HpySE526I ACGT 5 cut(s) 309, 348, 390, 521, 554
Hsp92I GRCGYC 5 cut(s) 114, 309, 343, 501, 869
Hsp92II CATG 5 cut(s) 187, 274, 499, 749, 913
HspAI GCGC 5 cut(s) 102, 343, 432, 614, 666
KasI GGCGCC 1 cut(s) 342
Ksp22I TGATCA 3 cut(s) 733, 742, 901
Kzo9I GATC 5 cut(s) 291, 733, 742, 885, 901
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 4 cut(s) 83, 99, 494, 775
Lsp1109I GCAGC 2 cut(s) 702, 763
LweI GCATC 1 cut(s) 363
MaeII ACGT 5 cut(s) 309, 348, 390, 521, 554
MaeIII GTNAC 2 cut(s) 162, 391
MalI GATC 5 cut(s) 293, 735, 744, 887, 903
MbiI CCGCTC 1 cut(s) 369
MboI GATC 5 cut(s) 291, 733, 742, 885, 901
MboII GAAGA 6 cut(s) 129, 202, 232, 443, 446, 564
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 4 cut(s) 465, 527, 772, 866
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 2 cut(s) 33, 877
MluNI TGGCCA 1 cut(s) 551
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 1 cut(s) 832
MmeI TCCRAC 4 cut(s) 87, 411, 622, 725
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 3 cut(s) 692, 750, 831
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 3 cut(s) 299, 410, 560
MspI CCGG 4 cut(s) 97, 212, 486, 578
MspR9I CCNGG 6 cut(s) 97, 213, 579, 605, 726, 807
MvaI CCWGG 3 cut(s) 605, 726, 807
MvnI CGCG 1 cut(s) 104
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 3 cut(s) 97, 213, 579
NdeII GATC 5 cut(s) 291, 733, 742, 885, 901
NlaIII CATG 5 cut(s) 187, 274, 499, 749, 913
NlaIV GGNNCC 7 cut(s) 79, 344, 463, 490, 685, 771, 921
NmeAIII GCCGAG 2 cut(s) 222, 512
NmuCI GTSAC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 287
PagI TCATGA 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 539
PfeI GAWTC 1 cut(s) 697
PflFI GACNNNGTC 1 cut(s) 503
PleI GAGTC 1 cut(s) 831
PluTI GGCGCC 1 cut(s) 346
PmaCI CACGTG 2 cut(s) 349, 522
PmlI CACGTG 2 cut(s) 349, 522
PpsI GAGTC 1 cut(s) 831
Ppu21I YACGTR 2 cut(s) 349, 522
PpuMI RGGWCCY 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 866
Psp1406I AACGTT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 3 cut(s) 603, 724, 805
PspCI CACGTG 2 cut(s) 349, 522
PspFI CCCAGC 7 cut(s) 84, 406, 410, 428, 508, 560, 608
PspGI CCWGG 3 cut(s) 603, 724, 805
PspN4I GGNNCC 7 cut(s) 79, 344, 463, 490, 685, 771, 921
PspOMI GGGCCC 1 cut(s) 461
PspPI GGNCC 4 cut(s) 413, 461, 462, 920
PspPPI RGGWCCY 1 cut(s) 920
PsuI RGATCY 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 503
PvuII CAGCTG 2 cut(s) 410, 560
RsaI GTAC 2 cut(s) 332, 402
RsaNI GTAC 2 cut(s) 331, 401
RseI CAYNNNNRTG 3 cut(s) 692, 750, 831
SacI GAGCTC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 813
Sau3AI GATC 5 cut(s) 291, 733, 742, 885, 901
Sau96I GGNCC 4 cut(s) 413, 461, 462, 920
SchI GAGTC 1 cut(s) 832
ScrFI CCNGG 6 cut(s) 97, 213, 579, 605, 726, 807
SduI GDGCHC 4 cut(s) 465, 527, 772, 866
SfaNI GCATC 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 287
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 920
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 3 cut(s) 692, 750, 831
SmlI CTYRAG 2 cut(s) 287, 364
SmoI CTYRAG 2 cut(s) 287, 364
Sse9I AATT 2 cut(s) 33, 877
SspDI GGCGCC 1 cut(s) 342
SstI GAGCTC 1 cut(s) 866
StyD4I CCNGG 6 cut(s) 95, 211, 577, 603, 724, 805
StyI CCWWGG 1 cut(s) 914
TaaI ACNGT 2 cut(s) 168, 706
TaiI ACGT 5 cut(s) 312, 351, 393, 524, 557
TaqI TCGA 6 cut(s) 188, 218, 288, 315, 542, 866
TasI AATT 2 cut(s) 33, 877
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 715, 776
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 5 cut(s) 287, 484, 762, 801, 890
Tth111I GACNNNGTC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 920
XhoI CTCGAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.