MD11G1193900.v1.1

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016798
Physical Location & Seq
Forward (+)
27658760 .. 27659530
771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1193900.v1.1.491

Sequence Viewer

Length: 771 bp
ATGGCAGACTATGGTGCTGGTGGCGGTGCAGCAATTTCTCTTTCACAAGCCTCTGCCGACGACTCGGAGCACAGCCCCAGGAGCCTCCCCACACTCACCGGAAGCGCGAGTGGAGGAGGAGGATGTTCGTCGTCCAGGCACAAGAACATGGTATCACCGTCGGGTGAGATTATCATCTCAAACTCAAAGAAACCGAGAGGGAGACCGCCGGGGTCCAAGAACAAGCCCAAAGCCCCGATTGTCATCACAAAGGACTCGGAGGCAGCGATGAAGGCGGTGGCCCTCGAGATCTCCGGCGGGTCCGATGTGGTGGAGACGATTGAACAGTACGCTCGAAGGCACCACGTCGGGATCAGTGTGTTGAGCGGTTCAGGGACGGTGTTGAGCGTCACGTTAAGGCACCCAGCTGGGCCCCATGCCCCGTCGCTGTCTCTTCAGGGGCCCTTCAACCTCCTCTCTCTCTCTGGTTCTTACATAGACTCCTTCCCGACCATCATCACTTGCTCTTCTTCTCCTGCCGCCGGAAGTGCTGGTGGTGGTTCAGCGAATGTACCGACGTCCGGGACTTGTTCACTGCTGGCTTGTGCATCGTTCGGGATATGTCTTGCGGGGGCGCAAGGGCACGTGTTTGGAGGGATTGTTGGGGGGAAGGTTGTGGCGGCGGGTACTGTGATCGTTGTGGCCGCCACGTTTCAGAATCCGACGCTTCAGAGGTTGCCTTTGCCTGTTGAAAGTGGCGACTGCGGTGGCGGTGAGTATGATCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

257

Amino Acids

25.42

Weight (kDa)

8.56

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 92 - 232 3.7e-16 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccB1I GGYRCC 2 cut(s) 339, 399
AccBSI CCGCTC 1 cut(s) 366
AccII CGCG 1 cut(s) 107
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 681
AcuI CTGAAG 2 cut(s) 419, 692
AcvI CACGTG 1 cut(s) 625
AcyI GRCGYC 1 cut(s) 557
AfaI GTAC 3 cut(s) 329, 552, 667
AfiI CCNNNNNNNGG 2 cut(s) 521, 560
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 3 cut(s) 323, 448, 731
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 2 cut(s) 77, 134
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 3 cut(s) 196, 308, 435
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 279, 410, 440, 681
ApaI GGGCCC 2 cut(s) 414, 444
ApeKI GCWGC 2 cut(s) 29, 263
AspLEI GCGC 2 cut(s) 107, 616
AspS9I GGNCC 7 cut(s) 213, 280, 300, 410, 411, 440, 441
AsuC2I CCSGG 2 cut(s) 210, 562
AsuHPI GGTGA 4 cut(s) 88, 147, 176, 764
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 213, 300
BaeGI GKGCMC 3 cut(s) 414, 444, 624
BanI GGYRCC 2 cut(s) 339, 399
BanII GRGCYC 2 cut(s) 414, 444
BbrPI CACGTG 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 41, 275
BccI CCATC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 79, 136
BcnI CCSGG 2 cut(s) 210, 562
BcoDI GTCTC 3 cut(s) 196, 308, 435
BglII AGATCT 1 cut(s) 288
BisI GCNGC 5 cut(s) 30, 264, 519, 660, 684
BlsI GCNGC 5 cut(s) 31, 265, 520, 661, 685
Bme1390I CCNGG 4 cut(s) 79, 136, 210, 562
Bme18I GGWCC 2 cut(s) 213, 300
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 7 cut(s) 213, 280, 300, 410, 411, 440, 441
BmiI GGNNCC 9 cut(s) 83, 214, 301, 341, 401, 412, 413, 441, 442
BmrFI CCNGG 4 cut(s) 79, 136, 210, 562
BmsI GCATC 1 cut(s) 596
BpuMI CCSGG 2 cut(s) 210, 562
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 2 cut(s) 173, 242
BsaHI GRCGYC 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 77, 209
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 624, 654
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 560
Bse8I GATNNNNATC 2 cut(s) 173, 242
BseBI CCWGG 2 cut(s) 79, 136
BseDI CCNNGG 2 cut(s) 77, 209
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 2 cut(s) 173, 242
BseLI CCNNNNNNNGG 2 cut(s) 521, 560
BseRI GAGGAG 3 cut(s) 129, 132, 443
BseSI GKGCMC 3 cut(s) 414, 444, 624
BseXI GCAGC 2 cut(s) 41, 275
BseYI CCCAGC 2 cut(s) 403, 407
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 4 cut(s) 281, 412, 442, 683
BshNI GGYRCC 2 cut(s) 339, 399
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 5 cut(s) 99, 209, 294, 522, 561
BslFI GGGAC 2 cut(s) 388, 577
BslI CCNNNNNNNGG 2 cut(s) 521, 560
BsmAI GTCTC 3 cut(s) 196, 308, 435
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 388, 577
BsnI GGCC 4 cut(s) 281, 412, 442, 683
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 284
Bsp120I GGGCCC 2 cut(s) 410, 440
Bsp1286I GDGCHC 4 cut(s) 72, 414, 444, 624
Bsp143I GATC 4 cut(s) 288, 351, 672, 760
BspANI GGCC 4 cut(s) 281, 412, 442, 683
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 9 cut(s) 83, 214, 301, 341, 401, 412, 413, 441, 442
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 511
BspT107I GGYRCC 2 cut(s) 339, 399
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 77, 209
BssMI GATC 4 cut(s) 288, 351, 672, 760
BssNI GRCGYC 1 cut(s) 557
Bst2UI CCWGG 2 cut(s) 79, 136
Bst4CI ACNGT 4 cut(s) 159, 327, 379, 670
Bst6I CTCTTC 2 cut(s) 438, 511
BstACI GRCGYC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 579
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 107, 616
BstKTI GATC 4 cut(s) 291, 354, 675, 763
BstMAI GTCTC 3 cut(s) 196, 308, 435
BstMBI GATC 4 cut(s) 288, 351, 672, 760
BstMWI GCNNNNNNNGC 3 cut(s) 81, 272, 527
BstNI CCWGG 2 cut(s) 79, 136
BstSCI CCNGG 4 cut(s) 77, 134, 208, 560
BstSLI GKGCMC 3 cut(s) 414, 444, 624
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 41, 275
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 4 cut(s) 281, 412, 442, 683
BtgZI GCGATG 1 cut(s) 281
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 361, 572
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 2 cut(s) 107, 616
Cfr13I GGNCC 7 cut(s) 213, 280, 300, 410, 411, 440, 441
CseI GACGC 2 cut(s) 376, 712
Csp6I GTAC 3 cut(s) 328, 551, 666
CviAII CATG 2 cut(s) 148, 416
CviQI GTAC 3 cut(s) 328, 551, 666
DpnI GATC 4 cut(s) 290, 353, 674, 762
DpnII GATC 4 cut(s) 288, 351, 672, 760
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 438, 511
EarI CTCTTC 2 cut(s) 438, 511
Eco24I GRGCYC 2 cut(s) 414, 444
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 213, 300
Eco57I CTGAAG 2 cut(s) 419, 692
Eco72I CACGTG 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 284
EcoO109I RGGNCCY 3 cut(s) 411, 440, 441
EcoRII CCWGG 2 cut(s) 77, 134
EcoT38I GRGCYC 2 cut(s) 414, 444
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 151, 419
FaiI YATR 6 cut(s) 12, 149, 417, 476, 601, 759
FaqI GGGAC 2 cut(s) 388, 577
FatI CATG 2 cut(s) 147, 415
FauI CCCGC 3 cut(s) 290, 601, 655
Fnu4HI GCNGC 5 cut(s) 30, 264, 519, 660, 684
FokI GGATG 1 cut(s) 135
FriOI GRGCYC 2 cut(s) 414, 444
Fsp4HI GCNGC 5 cut(s) 30, 264, 519, 660, 684
GlaI GCGC 2 cut(s) 106, 615
GluI GCNGC 5 cut(s) 30, 264, 519, 660, 684
GsaI CCCAGC 2 cut(s) 407, 411
HaeIII GGCC 4 cut(s) 281, 412, 442, 683
HapII CCGG 5 cut(s) 99, 209, 294, 522, 561
HgaI GACGC 2 cut(s) 376, 712
HhaI GCGC 2 cut(s) 107, 616
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 2 cut(s) 151, 419
Hin6I GCGC 2 cut(s) 105, 614
HinP1I GCGC 2 cut(s) 105, 614
HinfI GANTC 4 cut(s) 62, 254, 479, 697
HpaII CCGG 5 cut(s) 99, 209, 294, 522, 561
HphI GGTGA 4 cut(s) 88, 147, 176, 764
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 6 cut(s) 67, 259, 304, 696, 702, 711
Hpy188III TCNNGA 4 cut(s) 286, 349, 487, 595
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 7 cut(s) 62, 133, 163, 350, 427, 559, 706
HpyAV CCTTC 6 cut(s) 265, 330, 454, 493, 643, 759
HpyCH4III ACNGT 4 cut(s) 159, 327, 379, 670
HpyCH4IV ACGT 5 cut(s) 345, 392, 557, 624, 689
HpyCH4V TGCA 2 cut(s) 29, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 272, 527
HpySE526I ACGT 5 cut(s) 345, 392, 557, 624, 689
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 2 cut(s) 151, 419
HspAI GCGC 2 cut(s) 105, 614
Kzo9I GATC 4 cut(s) 288, 351, 672, 760
LguI GCTCTTC 1 cut(s) 511
LmnI GCTCC 2 cut(s) 67, 81
Lsp1109I GCAGC 2 cut(s) 41, 275
LweI GCATC 1 cut(s) 596
MaeII ACGT 5 cut(s) 345, 392, 557, 624, 689
MaeIII GTNAC 1 cut(s) 388
MalI GATC 4 cut(s) 290, 353, 674, 762
MbiI CCGCTC 1 cut(s) 366
MboI GATC 4 cut(s) 288, 351, 672, 760
MboII GAAGA 3 cut(s) 425, 498, 501
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 4 cut(s) 72, 414, 444, 624
MluCI AATT 1 cut(s) 33
MlyI GAGTC 3 cut(s) 56, 248, 473
MmeI TCCRAC 1 cut(s) 725
MseI TTAA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 5 cut(s) 99, 209, 294, 522, 561
MspR9I CCNGG 4 cut(s) 79, 136, 210, 562
MvaI CCWGG 2 cut(s) 79, 136
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 81, 272, 527
NciI CCSGG 2 cut(s) 210, 562
NdeII GATC 4 cut(s) 288, 351, 672, 760
NlaIII CATG 2 cut(s) 151, 419
NlaIV GGNNCC 9 cut(s) 83, 214, 301, 341, 401, 412, 413, 441, 442
NmuCI GTSAC 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PfeI GAWTC 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 5 cut(s) 31, 265, 520, 661, 685
PleI GAGTC 3 cut(s) 56, 248, 473
PmaCI CACGTG 1 cut(s) 625
PmlI CACGTG 1 cut(s) 625
PpsI GAGTC 3 cut(s) 56, 248, 473
Ppu21I YACGTR 1 cut(s) 625
Psp6I CCWGG 2 cut(s) 77, 134
PspCI CACGTG 1 cut(s) 625
PspFI CCCAGC 2 cut(s) 403, 407
PspGI CCWGG 2 cut(s) 77, 134
PspN4I GGNNCC 9 cut(s) 83, 214, 301, 341, 401, 412, 413, 441, 442
PspOMI GGGCCC 2 cut(s) 410, 440
PspPI GGNCC 7 cut(s) 213, 280, 300, 410, 411, 440, 441
PsuI RGATCY 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 3 cut(s) 329, 552, 667
RsaNI GTAC 3 cut(s) 328, 551, 666
SapI GCTCTTC 1 cut(s) 511
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 5 cut(s) 30, 264, 519, 660, 684
Sau3AI GATC 4 cut(s) 288, 351, 672, 760
Sau96I GGNCC 7 cut(s) 213, 280, 300, 410, 411, 440, 441
SchI GAGTC 3 cut(s) 56, 248, 473
ScrFI CCNGG 4 cut(s) 79, 136, 210, 562
SduI GDGCHC 4 cut(s) 72, 414, 444, 624
SfaNI GCATC 1 cut(s) 596
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 2 cut(s) 213, 300
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 33
StyD4I CCNGG 4 cut(s) 77, 134, 208, 560
TaaI ACNGT 4 cut(s) 159, 327, 379, 670
TaiI ACGT 5 cut(s) 348, 395, 560, 627, 692
TaqI TCGA 3 cut(s) 285, 334, 763
TasI AATT 1 cut(s) 33
TauI GCSGC 3 cut(s) 521, 662, 686
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 361, 579
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 29, 263
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 2 cut(s) 361, 579
VpaK11BI GGWCC 2 cut(s) 213, 300
XhoI CTCGAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.