pycom03g12200

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016798
Physical Location & Seq
Reverse (-)
12560438 .. 12561370
933 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12200.1

Sequence Viewer

Length: 933 bp
ATGGCAGACTCTGGTGCTGGTGGCGCTGCAGCAATTTCTCTTCCACAAGCCTCCGACGATGACTCCATGCACAGCCCCCGGAGCGTCCCCACACTCTCTGGAGGCGCAAGTGGTGGTGGAGGAGGCAGGTGTTCGTCGTCCGGACATAAGAACATGGTATCACCGTCGGGTGATATTATCATCTCAAACTCAAAGAAACCGAGAGGGAGACCGCCGGGGTCCAAGAACAAGCCCAAACCCCCGATCGTCATCACCAAAGACTCGGGGTCAGCGATGAAGGCGGTGGTCCTCGAGATCTCCGCCGGGTCCGATGTGGTGGAGACGATTGTACAGTACGCCCGAAGGCGCCACGTTGGCATCAGTGTGTTGAGCGGTTCAGGGGCGGTGTTGAACGTAAAGCTGAGACACCCAGCCGGGCCCCACGAACAGTCACTGTCTCTTCAGGGTCCATTCAATCTCCTCTCTCTCTCCGGCTCTTACATAGACTCCTTCCCGGCCGTCATCACTTGCTCTTCTTCTCCTTCCGCCGCTGGTGGTGATGGTGGTTCGGCCGTAGTACCGACGTCCGGGACTTGTTCTCTTCTGGCTTGTTCGTCGTTCACGGTATGTCTTGCGGGGGCGCAAGGGCACGTGTTTGGAGGGATTGTTGGGGGCAAGGTTGTGGCGGCGAGTACCGTGATGGTTGTGGCCGCCACGTTTTTGGATCCGACCCTTCAGAGGTTGCCTTTGACTGTTGAGGGTGGCGGTGAATATGAAGGTGAGGAGGATACTAAGCCTTGCATTAATGAAAAAAGTTGTCACACTTACGGCGGCGGCGGCGGCGGCCGTAGCAGTGGTGTTGCGAGTCCAACGTGCCAGATGAACACTAGCCCTCCTGATCATCATCATCATCAAGTCATGGCTTGGGATCCTCCATCTCGCACTCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

311

Amino Acids

31.15

Weight (kDa)

7.65

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 94 - 233 4.8e-17 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 117
AatII GACGTC 1 cut(s) 566
Acc36I ACCTGC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 140
AclWI GGATC 4 cut(s) 698, 711, 902, 915
AcoI YGGCCR 4 cut(s) 495, 549, 687, 823
AcuI CTGAAG 2 cut(s) 425, 698
AcvI CACGTG 1 cut(s) 631
AcyI GRCGYC 2 cut(s) 346, 563
AfaI GTAC 4 cut(s) 330, 335, 558, 673
AfiI CCNNNNNNNGG 2 cut(s) 566, 717
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 2 cut(s) 391, 454
AhdI GACNNNNNGTC 1 cut(s) 265
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 4 cut(s) 202, 314, 397, 441
AlwI GGATC 4 cut(s) 698, 711, 902, 915
AlwNI CAGNNNCTG 2 cut(s) 11, 433
Ama87I CYCGRG 2 cut(s) 262, 290
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 5 cut(s) 416, 495, 549, 687, 823
ApaI GGGCCC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 26, 29
AseI ATTAAT 1 cut(s) 783
AspLEI GCGC 4 cut(s) 26, 107, 348, 622
AspS9I GGNCC 6 cut(s) 219, 286, 306, 416, 417, 446
AsuC2I CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
AsuHPI GGTGA 6 cut(s) 153, 182, 244, 548, 758, 770
AvaI CYCGRG 2 cut(s) 262, 290
AvaII GGWCC 4 cut(s) 219, 286, 306, 446
BaeGI GKGCMC 2 cut(s) 420, 630
BamHI GGATCC 2 cut(s) 703, 907
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 420
BbrPI CACGTG 1 cut(s) 631
BbvI GCAGC 2 cut(s) 13, 41
BccI CCATC 3 cut(s) 533, 673, 922
BceAI ACGGC 4 cut(s) 482, 536, 810, 823
BciVI GTATCC 1 cut(s) 760
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
BcoDI GTCTC 4 cut(s) 202, 314, 397, 441
BfaI CTAG 1 cut(s) 867
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 2 cut(s) 27, 349
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 294
Bme1390I CCNGG 6 cut(s) 79, 216, 304, 415, 494, 568
Bme18I GGWCC 4 cut(s) 219, 286, 306, 446
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 262, 290
BmgT120I GGNCC 6 cut(s) 219, 286, 306, 416, 417, 446
BmiI GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 909
BmrFI CCNGG 6 cut(s) 79, 216, 304, 415, 494, 568
BmsI GCATC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
BsaAI YACGTR 1 cut(s) 631
BsaBI GATNNNNATC 2 cut(s) 248, 882
BsaHI GRCGYC 2 cut(s) 346, 563
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 77, 215
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 8 cut(s) 47, 77, 470, 500, 630, 660, 856, 886
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 717
Bse8I GATNNNNATC 2 cut(s) 248, 882
BseAI TCCGGA 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 77, 215
BseJI GATNNNNATC 2 cut(s) 248, 882
BseLI CCNNNNNNNGG 2 cut(s) 566, 717
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 3 cut(s) 135, 449, 776
BseSI GKGCMC 2 cut(s) 420, 630
BseX3I CGGCCG 3 cut(s) 495, 549, 823
BseXI GCAGC 2 cut(s) 13, 41
BseYI CCCAGC 1 cut(s) 409
Bsh1285I CGRYCG 4 cut(s) 246, 498, 552, 826
BshFI GGCC 5 cut(s) 418, 497, 551, 689, 825
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 4 cut(s) 246, 498, 552, 826
BsiHKCI CYCGRG 2 cut(s) 262, 290
BsiSI CCGG 8 cut(s) 79, 141, 215, 303, 414, 471, 494, 567
BslFI GGGAC 2 cut(s) 71, 583
BslI CCNNNNNNNGG 2 cut(s) 566, 717
BsmAI GTCTC 4 cut(s) 202, 314, 397, 441
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 71, 583
BsnI GGCC 5 cut(s) 418, 497, 551, 689, 825
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 2 cut(s) 262, 290
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 420, 630
Bsp13I TCCGGA 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 243, 294, 703, 877, 907
BspANI GGCC 5 cut(s) 418, 497, 551, 689, 825
BspCNI CTCAG 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 909
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 4 cut(s) 698, 711, 902, 915
BspQI GCTCTTC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 77, 215
BssMI GATC 5 cut(s) 243, 294, 703, 877, 907
BssNI GRCGYC 2 cut(s) 346, 563
Bst4CI ACNGT 7 cut(s) 165, 333, 429, 435, 604, 676, 733
Bst6I CTCTTC 4 cut(s) 45, 444, 517, 585
BstACI GRCGYC 2 cut(s) 346, 563
BstAUI TGTACA 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 631
BstDEI CTNAG 2 cut(s) 401, 771
BstH2I RGCGCY 2 cut(s) 27, 349
BstHHI GCGC 4 cut(s) 26, 107, 348, 622
BstKTI GATC 5 cut(s) 246, 297, 706, 880, 910
BstMAI GTCTC 4 cut(s) 202, 314, 397, 441
BstMBI GATC 5 cut(s) 243, 294, 703, 877, 907
BstMCI CGRYCG 4 cut(s) 246, 498, 552, 826
BstMWI GCNNNNNNNGC 8 cut(s) 23, 81, 278, 354, 816, 819, 822, 828
BstSCI CCNGG 6 cut(s) 77, 214, 302, 413, 492, 566
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 2 cut(s) 420, 630
BstV1I GCAGC 2 cut(s) 13, 41
BstX2I RGATCY 3 cut(s) 294, 703, 907
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 3 cut(s) 294, 703, 907
BstZI CGGCCG 3 cut(s) 495, 549, 823
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 5 cut(s) 418, 497, 551, 689, 825
BtgZI GCGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 3 cut(s) 367, 431, 838
BveI ACCTGC 1 cut(s) 117
CaiI CAGNNNCTG 2 cut(s) 11, 433
CfoI GCGC 4 cut(s) 26, 107, 348, 622
Cfr13I GGNCC 6 cut(s) 219, 286, 306, 416, 417, 446
CseI GACGC 1 cut(s) 73
Csp6I GTAC 4 cut(s) 329, 334, 557, 672
CviAII CATG 3 cut(s) 67, 154, 898
CviQI GTAC 4 cut(s) 329, 334, 557, 672
DdeI CTNAG 2 cut(s) 401, 771
DinI GGCGCC 1 cut(s) 347
DpnI GATC 5 cut(s) 245, 296, 705, 879, 909
DpnII GATC 5 cut(s) 243, 294, 703, 877, 907
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 4 cut(s) 495, 549, 687, 823
EagI CGGCCG 3 cut(s) 495, 549, 823
Eam1104I CTCTTC 4 cut(s) 45, 444, 517, 585
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 4 cut(s) 45, 444, 517, 585
EciI GGCGGA 2 cut(s) 289, 514
EclXI CGGCCG 3 cut(s) 495, 549, 823
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 4 cut(s) 219, 286, 306, 446
Eco52I CGGCCG 3 cut(s) 495, 549, 823
Eco57I CTGAAG 2 cut(s) 425, 698
Eco72I CACGTG 1 cut(s) 631
Eco88I CYCGRG 2 cut(s) 262, 290
EcoO109I RGGNCCY 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 420
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 70, 157, 901
FaiI YATR 7 cut(s) 68, 147, 155, 482, 607, 753, 899
FaqI GGGAC 2 cut(s) 71, 583
FatI CATG 3 cut(s) 66, 153, 897
FauI CCCGC 1 cut(s) 607
FbaI TGATCA 1 cut(s) 877
FriOI GRGCYC 1 cut(s) 420
FspBI CTAG 1 cut(s) 867
GlaI GCGC 4 cut(s) 25, 106, 347, 621
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 2 cut(s) 27, 349
HaeIII GGCC 5 cut(s) 418, 497, 551, 689, 825
HapII CCGG 8 cut(s) 79, 141, 215, 303, 414, 471, 494, 567
HgaI GACGC 1 cut(s) 73
HhaI GCGC 4 cut(s) 26, 107, 348, 622
Hin1I GRCGYC 2 cut(s) 346, 563
Hin1II CATG 3 cut(s) 70, 157, 901
Hin6I GCGC 4 cut(s) 24, 105, 346, 620
HinP1I GCGC 4 cut(s) 24, 105, 346, 620
HinfI GANTC 5 cut(s) 8, 62, 260, 485, 844
HpaII CCGG 8 cut(s) 79, 141, 215, 303, 414, 471, 494, 567
HphI GGTGA 6 cut(s) 153, 182, 244, 548, 758, 770
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 55, 310, 708, 717
Hpy188III TCNNGA 4 cut(s) 99, 141, 292, 875
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 5 cut(s) 59, 139, 169, 565, 598
HpyAV CCTTC 6 cut(s) 271, 336, 499, 531, 722, 749
HpyCH4III ACNGT 7 cut(s) 165, 333, 429, 435, 604, 676, 733
HpyCH4IV ACGT 6 cut(s) 351, 393, 563, 630, 695, 851
HpyCH4V TGCA 3 cut(s) 29, 70, 780
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 81, 278, 354, 816, 819, 822, 828
HpyF3I CTNAG 2 cut(s) 401, 771
HpySE526I ACGT 6 cut(s) 351, 393, 563, 630, 695, 851
Hsp92I GRCGYC 2 cut(s) 346, 563
Hsp92II CATG 3 cut(s) 70, 157, 901
HspAI GCGC 4 cut(s) 24, 105, 346, 620
KasI GGCGCC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 5 cut(s) 243, 294, 703, 877, 907
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 13, 41
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 867
MaeII ACGT 6 cut(s) 351, 393, 563, 630, 695, 851
MaeIII GTNAC 2 cut(s) 429, 797
MalI GATC 5 cut(s) 245, 296, 705, 879, 909
MbiI CCGCTC 1 cut(s) 372
MboI GATC 5 cut(s) 243, 294, 703, 877, 907
MboII GAAGA 5 cut(s) 32, 431, 504, 507, 572
MflI RGATCY 3 cut(s) 294, 703, 907
MhlI GDGCHC 2 cut(s) 420, 630
MluCI AATT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 346
MlyI GAGTC 5 cut(s) 2, 56, 254, 479, 853
MmeI TCCRAC 3 cut(s) 78, 731, 872
MroI TCCGGA 1 cut(s) 140
MseI TTAA 1 cut(s) 783
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 8 cut(s) 79, 141, 215, 303, 414, 471, 494, 567
MspR9I CCNGG 6 cut(s) 79, 216, 304, 415, 494, 568
MwoI GCNNNNNNNGC 8 cut(s) 23, 81, 278, 354, 816, 819, 822, 828
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 6 cut(s) 79, 216, 304, 415, 494, 568
NdeII GATC 5 cut(s) 243, 294, 703, 877, 907
NlaIII CATG 3 cut(s) 70, 157, 901
NlaIV GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 909
NmuCI GTSAC 2 cut(s) 429, 797
PaeR7I CTCGAG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 566
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 5 cut(s) 2, 56, 254, 479, 852
PluTI GGCGCC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 5 cut(s) 2, 56, 254, 479, 852
Ppu21I YACGTR 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 783
PspCI CACGTG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 409
PspN4I GGNNCC 8 cut(s) 220, 307, 347, 418, 419, 447, 705, 909
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 6 cut(s) 219, 286, 306, 416, 417, 446
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 2 cut(s) 11, 433
PsuI RGATCY 3 cut(s) 294, 703, 907
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 4 cut(s) 330, 335, 558, 673
RsaNI GTAC 4 cut(s) 329, 334, 557, 672
RseI CAYNNNNRTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 783
Sau3AI GATC 5 cut(s) 243, 294, 703, 877, 907
Sau96I GGNCC 6 cut(s) 219, 286, 306, 416, 417, 446
SchI GAGTC 5 cut(s) 2, 56, 254, 479, 853
ScrFI CCNGG 6 cut(s) 79, 216, 304, 415, 494, 568
SduI GDGCHC 2 cut(s) 420, 630
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 347
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 4 cut(s) 219, 286, 306, 446
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 33
SspDI GGCGCC 1 cut(s) 345
SspMI CTAG 1 cut(s) 867
StyD4I CCNGG 6 cut(s) 77, 214, 302, 413, 492, 566
TaaI ACNGT 7 cut(s) 165, 333, 429, 435, 604, 676, 733
TaiI ACGT 6 cut(s) 354, 396, 566, 633, 698, 854
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 328
TauI GCSGC 8 cut(s) 530, 668, 692, 813, 816, 819, 822, 825
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 3 cut(s) 367, 438, 838
TseFI GTSAC 2 cut(s) 429, 797
TseI GCWGC 2 cut(s) 26, 29
Tsp45I GTSAC 2 cut(s) 429, 797
TspDTI ATGAA 4 cut(s) 290, 768, 801, 875
TspRI CASTG 3 cut(s) 367, 438, 838
VpaK11BI GGWCC 4 cut(s) 219, 286, 306, 446
VspI ATTAAT 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 867
ZraI GACGTC 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.