Rroxscaffold_1G00030200

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016798
Physical Location & Seq
Forward (+)
39604433 .. 39605452
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030200.1

Sequence Viewer

Length: 1020 bp
ATGGCAGACTACGGCGGCCAGGGCCTAAACTTCTCTGCTCTCAACTCCGACGACGATGACTCCGACCACAGCCCCAAGAGCATGGCCGGCGCTTGTGGTGGAAAATCATCATCATCATCATCATCCAGGGTGGTGAAGCTCGAGCCGGTTTTCAGAAGTCCTCATCAGCTTAGCGGCGTGGAGTTGAGAGGAAGAGGATCACCAAGTAGAGCTGGGGAGATGATGATGGTGCCAAGTTCGAGCAGGAAGCCGAGAGGAAGACCCCCGGGTTCGAAGAACAGGCCGAGAGCTCCGATTGTGATCAACAAGGAGTCCGAGTCGGGCATGCAGTCAGTGGTGATCGAGATCTCTGCCGGGTCGGATGTGGTGGAGAGCCTGGTGCAGTACGCGCGTAGAAGACGGGTAGGGATTACCGTGCTCAGTGGTTGTGGCTCGGTCTCAAGCGTGACACTCCGACGCCCTTTGCTCCAGTCCCACCACGCGCCGGCGCCGGCTATGTCGCTTCAAGGGCCGTTTAACCTGCTCAGTCTGTCGGGATCGTTTATGGAATCTCTCGCTACTTGTTCCTTTGGAATATCTCTGGCAGGATCACAAGGCCAGGTGTTTGGAGGGATTGTCGGAGGCCAGGTCATAGCGGCGAGTCTGGTTGTGGTTGTGGCTGCCACTTTTCGCAATCCTAGGTTTCACAAGTTGCCGACTGGCCCTGGCCTTGCTAGTGGTGATGAATCTGATGATGGTGATACTCAGGATACTAAGCCTTCCTTGTTATTGGGTGGCTGTGCTACCGGTAATGTAGTTGTAAATCATGCTCATGAGACTACTAGCTGTGGTTTTGGTGGTGGTTCTGGATCTGGTTCGAGTAGTGCTACTACTGCGGCGGCCATGTCCACGTGTGTTTACGGTGGCGGTGTGAGTCCACAGCCCATGAATTGCCTGCAGGTCTCTCATAGTCACCATGATCAACTAGTCCAGCCTTGGGGTGGTCCTCCCTCTCGCCCTCCTCTTCCTCCTCATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

339

Amino Acids

34.79

Weight (kDa)

8.72

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 111 - 224 1.2e-18 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016798)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27860
malus_domestica MD03G1166300.v1.1 MD11G1193900.v1.1
prunus_persica Prupe.4G266900_v2.0.a1
pyrus_communis pycom03g12200
rosa_chinensis RchiOBHm_Chr5g0050611
rosa_laevigata RLG00000034711
rosa_multiflora Rmu_ssc0000350.1_g000011
rosa_roxburghii Rroxscaffold_1G00030200
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5BG343700 Rh5CG371400 Rh5DG356600
rosa_wichuraiana Rw5G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 528, 928
AccB1I GGYRCC 2 cut(s) 229, 487
AccII CGCG 3 cut(s) 389, 391, 482
AciI CCGC 6 cut(s) 15, 174, 635, 875, 878, 906
AclWI GGATC 4 cut(s) 205, 544, 595, 856
AcoI YGGCCR 3 cut(s) 16, 84, 879
AcvI CACGTG 1 cut(s) 891
AcyI GRCGYC 2 cut(s) 457, 488
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 484, 976, 980
AflIII ACRYGT 1 cut(s) 890
AgeI ACCGGT 1 cut(s) 785
AgsI TTSAA 1 cut(s) 506
AhlI ACTAGT 1 cut(s) 964
AjnI CCWGG 6 cut(s) 18, 125, 375, 597, 624, 703
AluBI AGCT 5 cut(s) 139, 169, 212, 290, 825
AluI AGCT 5 cut(s) 139, 169, 212, 290, 825
Alw21I GWGCWC 2 cut(s) 292, 420
Alw26I GTCTC 3 cut(s) 442, 809, 946
AlwI GGATC 4 cut(s) 205, 544, 595, 856
Ama87I CYCGRG 2 cut(s) 140, 265
ApeKI GCWGC 1 cut(s) 659
AsiGI ACCGGT 1 cut(s) 785
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 4 cut(s) 92, 391, 484, 490
AspS9I GGNCC 4 cut(s) 22, 509, 701, 983
AsuC2I CCSGG 3 cut(s) 266, 267, 355
AsuHPI GGTGA 6 cut(s) 145, 192, 349, 731, 749, 944
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 140, 265
AvaII GGWCC 1 cut(s) 983
AvrII CCTAGG 1 cut(s) 677
BanI GGYRCC 2 cut(s) 229, 487
BanII GRGCYC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 265, 403
Bbv12I GWGCWC 2 cut(s) 292, 420
BbvI GCAGC 1 cut(s) 646
BccI CCATC 2 cut(s) 220, 728
BceAI ACGGC 2 cut(s) 28, 496
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 6 cut(s) 20, 127, 377, 599, 626, 705
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 2 cut(s) 300, 958
BcnI CCSGG 3 cut(s) 266, 267, 355
BcoDI GTCTC 3 cut(s) 442, 809, 946
BcuI ACTAGT 1 cut(s) 964
BfaI CTAG 5 cut(s) 678, 714, 822, 965, 1018
BfmI CTRYAG 1 cut(s) 935
BfoI RGCGCY 2 cut(s) 93, 491
BfuAI ACCTGC 2 cut(s) 528, 928
BfuI GTATCC 1 cut(s) 742
BglII AGATCT 1 cut(s) 345
BisI GCNGC 6 cut(s) 16, 175, 636, 660, 876, 879
BlnI CCTAGG 1 cut(s) 677
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 6 cut(s) 17, 176, 637, 661, 877, 880
Bme1390I CCNGG 9 cut(s) 20, 127, 266, 267, 355, 377, 599, 626, 705
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 2 cut(s) 140, 265
BmgT120I GGNCC 4 cut(s) 22, 509, 701, 983
BmiI GGNNCC 2 cut(s) 231, 489
BmrFI CCNGG 9 cut(s) 20, 127, 266, 267, 355, 377, 599, 626, 705
BpiI GAAGAC 2 cut(s) 265, 403
BpmI CTGGAG 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 3 cut(s) 266, 267, 355
BsaAI YACGTR 1 cut(s) 891
BsaBI GATNNNNATC 2 cut(s) 299, 344
BsaHI GRCGYC 2 cut(s) 457, 488
BsaI GGTCTC 2 cut(s) 442, 946
BsaJI CCNNGG 7 cut(s) 19, 126, 264, 265, 677, 703, 974
BsaWI WCCGGW 1 cut(s) 785
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 302, 332, 600, 612, 630, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 976, 980
Bse118I RCCGGY 5 cut(s) 86, 145, 484, 490, 785
Bse1I ACTGG 2 cut(s) 469, 703
Bse8I GATNNNNATC 2 cut(s) 299, 344
BseBI CCWGG 6 cut(s) 20, 127, 377, 599, 626, 705
BseDI CCNNGG 7 cut(s) 19, 126, 264, 265, 677, 703, 974
BseGI GGATG 2 cut(s) 122, 367
BseJI GATNNNNATC 2 cut(s) 299, 344
BseLI CCNNNNNNNGG 3 cut(s) 484, 976, 980
BseMII CTCAG 3 cut(s) 433, 538, 758
BseNI ACTGG 2 cut(s) 469, 703
BseRI GAGGAG 2 cut(s) 990, 999
BseXI GCAGC 1 cut(s) 646
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 3 cut(s) 389, 391, 482
BshNI GGYRCC 2 cut(s) 229, 487
BshTI ACCGGT 1 cut(s) 785
BsiHKAI GWGCWC 2 cut(s) 292, 420
BsiHKCI CYCGRG 2 cut(s) 140, 265
BsiSI CCGG 7 cut(s) 87, 146, 266, 354, 485, 491, 786
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 3 cut(s) 484, 976, 980
BsmAI GTCTC 3 cut(s) 442, 809, 946
BsmFI GGGAC 1 cut(s) 457
Bso31I GGTCTC 2 cut(s) 442, 946
BsoBI CYCGRG 2 cut(s) 140, 265
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 292, 420
Bsp143I GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 6 cut(s) 15, 174, 635, 875, 878, 906
BspCNI CTCAG 3 cut(s) 432, 537, 757
BspFNI CGCG 3 cut(s) 389, 391, 482
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 2 cut(s) 231, 489
BspMAI CTGCAG 1 cut(s) 939
BspMI ACCTGC 2 cut(s) 528, 928
BspPI GGATC 4 cut(s) 205, 544, 595, 856
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 229, 487
BspTNI GGTCTC 2 cut(s) 442, 946
BsrFI RCCGGY 5 cut(s) 86, 145, 484, 490, 785
BsrI ACTGG 2 cut(s) 469, 703
BssAI RCCGGY 5 cut(s) 86, 145, 484, 490, 785
BssECI CCNNGG 7 cut(s) 19, 126, 264, 265, 677, 703, 974
BssMI GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
BssNI GRCGYC 2 cut(s) 457, 488
BssT1I CCWWGG 2 cut(s) 677, 974
Bst2UI CCWGG 6 cut(s) 20, 127, 377, 599, 626, 705
Bst4CI ACNGT 2 cut(s) 415, 902
Bst6I CTCTTC 2 cut(s) 187, 1008
BstACI GRCGYC 2 cut(s) 457, 488
BstBAI YACGTR 1 cut(s) 891
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 5 cut(s) 88, 326, 486, 492, 935
BstDEI CTNAG 5 cut(s) 170, 419, 524, 744, 753
BstF5I GGATG 2 cut(s) 122, 367
BstFNI CGCG 3 cut(s) 389, 391, 482
BstH2I RGCGCY 2 cut(s) 93, 491
BstHHI GCGC 4 cut(s) 92, 391, 484, 490
BstKTI GATC 8 cut(s) 200, 303, 342, 348, 539, 590, 851, 961
BstMAI GTCTC 3 cut(s) 442, 809, 946
BstMBI GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
BstMWI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 388, 508, 872
BstNI CCWGG 6 cut(s) 20, 127, 377, 599, 626, 705
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 9 cut(s) 18, 125, 264, 265, 353, 375, 597, 624, 703
BstSFI CTRYAG 1 cut(s) 935
BstUI CGCG 3 cut(s) 389, 391, 482
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 2 cut(s) 265, 403
BstX2I RGATCY 2 cut(s) 345, 848
BstXI CCANNNNNNTGG 2 cut(s) 82, 605
BstYI RGATCY 2 cut(s) 345, 848
BsuI GTATCC 1 cut(s) 742
BtsCI GGATG 2 cut(s) 122, 367
BtsIMutI CAGTG 2 cut(s) 339, 427
BveI ACCTGC 2 cut(s) 528, 928
Cac8I GCNNGC 5 cut(s) 88, 326, 486, 492, 935
CciI TCATGA 1 cut(s) 811
CfoI GCGC 4 cut(s) 92, 391, 484, 490
Cfr10I RCCGGY 5 cut(s) 86, 145, 484, 490, 785
Cfr13I GGNCC 4 cut(s) 22, 509, 701, 983
Cfr9I CCCGGG 1 cut(s) 265
CseI GACGC 1 cut(s) 465
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 785
CviAII CATG 7 cut(s) 82, 325, 806, 812, 883, 925, 956
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 5 cut(s) 170, 419, 524, 744, 753
DinI GGCGCC 1 cut(s) 489
DpnI GATC 8 cut(s) 199, 302, 341, 347, 538, 589, 850, 960
DpnII GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
EaeI YGGCCR 3 cut(s) 16, 84, 879
Eam1104I CTCTTC 2 cut(s) 187, 1008
EarI CTCTTC 2 cut(s) 187, 1008
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 677, 974
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 442, 946
Eco47I GGWCC 1 cut(s) 983
Eco53kI GAGCTC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 891
Eco88I CYCGRG 2 cut(s) 140, 265
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 22
EcoRII CCWGG 6 cut(s) 18, 125, 375, 597, 624, 703
EcoT14I CCWWGG 2 cut(s) 677, 974
EcoT38I GRGCYC 1 cut(s) 292
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
ErhI CCWWGG 2 cut(s) 677, 974
FaeI CATG 7 cut(s) 85, 328, 809, 815, 886, 928, 959
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 1 cut(s) 457
FatI CATG 7 cut(s) 81, 324, 805, 811, 882, 924, 955
FbaI TGATCA 2 cut(s) 300, 958
Fnu4HI GCNGC 6 cut(s) 16, 175, 636, 660, 876, 879
FokI GGATG 2 cut(s) 109, 374
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 6 cut(s) 16, 175, 636, 660, 876, 879
FspBI CTAG 5 cut(s) 678, 714, 822, 965, 1018
GlaI GCGC 4 cut(s) 91, 390, 483, 489
GluI GCNGC 6 cut(s) 16, 175, 636, 660, 876, 879
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 452
HaeII RGCGCY 2 cut(s) 93, 491
HapII CCGG 7 cut(s) 87, 146, 266, 354, 485, 491, 786
HgaI GACGC 1 cut(s) 465
HhaI GCGC 4 cut(s) 92, 391, 484, 490
Hin1I GRCGYC 2 cut(s) 457, 488
Hin1II CATG 7 cut(s) 85, 328, 809, 815, 886, 928, 959
Hin6I GCGC 4 cut(s) 90, 389, 482, 488
HinP1I GCGC 4 cut(s) 90, 389, 482, 488
HinfI GANTC 7 cut(s) 59, 311, 317, 548, 640, 725, 913
HpaII CCGG 7 cut(s) 87, 146, 266, 354, 485, 491, 786
HphI GGTGA 6 cut(s) 145, 192, 349, 731, 749, 944
Hpy166II GTNNAC 3 cut(s) 888, 898, 917
Hpy188I TCNGA 9 cut(s) 49, 64, 155, 294, 316, 361, 455, 620, 730
Hpy188III TCNNGA 5 cut(s) 343, 534, 746, 812, 846
Hpy8I GTNNAC 3 cut(s) 888, 898, 917
Hpy99I CGWCG 3 cut(s) 53, 56, 459
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 2 cut(s) 415, 902
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 3 cut(s) 328, 382, 937
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 388, 508, 872
HpyF3I CTNAG 5 cut(s) 170, 419, 524, 744, 753
HpySE526I ACGT 1 cut(s) 890
Hsp92I GRCGYC 2 cut(s) 457, 488
Hsp92II CATG 7 cut(s) 85, 328, 809, 815, 886, 928, 959
HspAI GCGC 4 cut(s) 90, 389, 482, 488
KasI GGCGCC 1 cut(s) 487
KroI GCCGGC 3 cut(s) 86, 484, 490
KroNI GCCGGC 3 cut(s) 88, 486, 492
Ksp22I TGATCA 2 cut(s) 300, 958
Kzo9I GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
LmnI GCTCC 2 cut(s) 295, 471
Lsp1109I GCAGC 1 cut(s) 646
MaeI CTAG 5 cut(s) 678, 714, 822, 965, 1018
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 2 cut(s) 445, 950
MalI GATC 8 cut(s) 199, 302, 341, 347, 538, 589, 850, 960
MboI GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
MboII GAAGA 5 cut(s) 204, 270, 286, 408, 995
MflI RGATCY 2 cut(s) 345, 848
MhlI GDGCHC 2 cut(s) 292, 420
MluCI AATT 1 cut(s) 928
Mly113I GGCGCC 1 cut(s) 488
MlyI GAGTC 5 cut(s) 53, 320, 326, 649, 922
MmeI TCCRAC 5 cut(s) 72, 87, 339, 478, 598
MreI CGCCGGCG 1 cut(s) 484
MroNI GCCGGC 3 cut(s) 86, 484, 490
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 810
MspI CCGG 7 cut(s) 87, 146, 266, 354, 485, 491, 786
MspR9I CCNGG 9 cut(s) 20, 127, 266, 267, 355, 377, 599, 626, 705
MvaI CCWGG 6 cut(s) 20, 127, 377, 599, 626, 705
MvnI CGCG 3 cut(s) 389, 391, 482
MwoI GCNNNNNNNGC 6 cut(s) 21, 78, 87, 388, 508, 872
NaeI GCCGGC 3 cut(s) 88, 486, 492
NarI GGCGCC 1 cut(s) 488
NciI CCSGG 3 cut(s) 266, 267, 355
NdeII GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
NgoMIV GCCGGC 3 cut(s) 86, 484, 490
NlaIII CATG 7 cut(s) 85, 328, 809, 815, 886, 928, 959
NlaIV GGNNCC 2 cut(s) 231, 489
NmeAIII GCCGAG 2 cut(s) 276, 309
NmuCI GTSAC 2 cut(s) 445, 950
NspI RCATGY 1 cut(s) 328
NspV TTCGAA 1 cut(s) 272
PaeI GCATGC 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 811
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 3 cut(s) 88, 486, 492
PfeI GAWTC 2 cut(s) 548, 725
PinAI ACCGGT 1 cut(s) 785
PkrI GCNGC 6 cut(s) 17, 176, 637, 661, 877, 880
PleI GAGTC 5 cut(s) 53, 319, 325, 648, 921
PluTI GGCGCC 1 cut(s) 491
PmaCI CACGTG 1 cut(s) 891
PmlI CACGTG 1 cut(s) 891
PpsI GAGTC 5 cut(s) 53, 319, 325, 648, 921
Ppu21I YACGTR 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 6 cut(s) 18, 125, 375, 597, 624, 703
PspCI CACGTG 1 cut(s) 891
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 6 cut(s) 18, 125, 375, 597, 624, 703
PspN4I GGNNCC 2 cut(s) 231, 489
PspPI GGNCC 4 cut(s) 22, 509, 701, 983
PspXI VCTCGAGB 1 cut(s) 140
PstI CTGCAG 1 cut(s) 939
PsuI RGATCY 2 cut(s) 345, 848
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 810
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 6 cut(s) 16, 175, 636, 660, 876, 879
Sau3AI GATC 8 cut(s) 197, 300, 339, 345, 536, 587, 848, 958
Sau96I GGNCC 4 cut(s) 22, 509, 701, 983
SbfI CCTGCAGG 1 cut(s) 939
SchI GAGTC 5 cut(s) 53, 320, 326, 649, 922
ScrFI CCNGG 9 cut(s) 20, 127, 266, 267, 355, 377, 599, 626, 705
SdaI CCTGCAGG 1 cut(s) 939
SduI GDGCHC 2 cut(s) 292, 420
SfcI CTRYAG 1 cut(s) 935
SfoI GGCGCC 1 cut(s) 489
Sfr274I CTCGAG 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 272
SgrAI CRCCGGYG 1 cut(s) 484
SinI GGWCC 1 cut(s) 983
SlaI CTCGAG 1 cut(s) 140
SmaI CCCGGG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 810
SmlI CTYRAG 2 cut(s) 140, 439
SmoI CTYRAG 2 cut(s) 140, 439
SpeI ACTAGT 1 cut(s) 964
SphI GCATGC 1 cut(s) 328
Sse8387I CCTGCAGG 1 cut(s) 939
Sse9I AATT 1 cut(s) 928
SsiI CCGC 6 cut(s) 15, 174, 635, 875, 878, 906
SspDI GGCGCC 1 cut(s) 487
SspMI CTAG 5 cut(s) 678, 714, 822, 965, 1018
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 9 cut(s) 18, 125, 264, 265, 353, 375, 597, 624, 703
StyI CCWWGG 2 cut(s) 677, 974
TaaI ACNGT 2 cut(s) 415, 902
TaiI ACGT 1 cut(s) 893
TaqI TCGA 5 cut(s) 141, 239, 272, 342, 857
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 928
TauI GCSGC 5 cut(s) 18, 177, 638, 878, 881
TfiI GAWTC 2 cut(s) 548, 725
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 2 cut(s) 339, 427
TseFI GTSAC 2 cut(s) 445, 950
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 2 cut(s) 445, 950
TspDTI ATGAA 2 cut(s) 738, 941
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 2 cut(s) 339, 427
VpaK11BI GGWCC 1 cut(s) 983
XceI RCATGY 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 140
XmaI CCCGGG 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 677
XspI CTAG 5 cut(s) 678, 714, 822, 965, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.