Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Reverse (-)

29390055 .. 29392439

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1214300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGCCATGGCTGCACTTCAGAGCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTCGGCCAACGCCTCTTCCCCCCAACTCTTTACCCTGTCCCGGCCAAGTTAACAGTAAAGCCTTGCCTCATCGTCGTGAAGCTCAAAAGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCAGTTTTGCACAAAATGCATGTTAAGGTTGGGGATACAGTGAAAGTCATATCGGGACATGAAAAGGGTAAAACTGGAGAGGTAACAAAGATCTTTAAGCACAATAGCACCGTGATAGTGAAGGAAATAAACTTGAAGACGAAGCATATGAAGAGCAGGGAAGAGGGAGAACCAGGACAGATTCTTAAGGTAGAAGGAGCTATACACAGCTCGAACGTGATGCTTTTCTCGAAAGAAAAGAATGTAGCAAGTCGGGTGGGTCATAAAATTCTGGAAAATGGACAACGAGTTCGCTACCTCATCAAAACTGGTGAAATAATAGATAGCACCGAGAACTGGAAAAAATTGAAGGAAGAAAAAAAGAAAACTGAAGAAGCCGTCACTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

193

Amino Acids

21.47

Weight (kDa)

9.89

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW4_SPT5	PF23291	67 - 96	9e-06	Transcription elongation factor SPT5, fourth KOW domain
KOW	PF00467	72 - 103	3.1e-09	KOW motif
ribosomal_L24	PF17136	105 - 169	2.7e-19	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	67, 105
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	2 cut(s)	5, 576
AfiI	CCNNNNNNNGG	2 cut(s)	103, 522
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	322, 535
AjnI	CCWGG	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	4 cut(s)	27, 145, 386, 396
AluI	AGCT	4 cut(s)	27, 145, 386, 396
Alw21I	GWGCWC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	67, 105
ApeKI	GCWGC	3 cut(s)	5, 14, 572
ApoI	RAATTY	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	17, 559
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	3 cut(s)	6, 15, 573
BlsI	GCNGC	3 cut(s)	7, 16, 574
Bme1390I	CCNGG	2 cut(s)	104, 360
BmrFI	CCNGG	2 cut(s)	104, 360
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	9, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 522
Bse1I	ACTGG	4 cut(s)	188, 265, 499, 527
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	9, 64
BseLI	CCNNNNNNNGG	2 cut(s)	103, 522
BseNI	ACTGG	4 cut(s)	188, 265, 499, 527
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	17, 559
BshFI	GGCC	2 cut(s)	69, 107
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	86, 255
BslI	CCNNNNNNNGG	2 cut(s)	103, 522
BsmFI	GGGAC	2 cut(s)	86, 255
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	69, 107
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	69, 107
BspQI	GCTCTTC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	188, 265, 499, 527
BssECI	CCNNGG	2 cut(s)	9, 64
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	118, 226, 298
Bst6I	CTCTTC	3 cut(s)	83, 332, 342
BstAFI	CTTAAG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	102, 358
BstV1I	GCAGC	2 cut(s)	17, 559
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	69, 107
BtgI	CCRYGG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	231, 567
Cac8I	GCNNGC	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	10, 31, 206, 245
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	67, 105
Eam1104I	CTCTTC	3 cut(s)	83, 332, 342
EarI	CTCTTC	3 cut(s)	83, 332, 342
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	5, 576
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 34, 209, 248
FaiI	YATR	9 cut(s)	11, 32, 207, 236, 246, 333, 335, 389, 450
FaqI	GGGAC	2 cut(s)	86, 255
FatI	CATG	4 cut(s)	9, 30, 205, 244
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	6, 15, 573
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	6, 15, 573
GluI	GCNGC	3 cut(s)	6, 15, 573
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	69, 107
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	4 cut(s)	13, 34, 209, 248
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	367
HpaI	GTTAAC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	4 cut(s)	139, 240, 415, 458
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	6 cut(s)	70, 157, 194, 301, 374, 529
HpyCH4III	ACNGT	3 cut(s)	118, 226, 298
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	17, 171, 196, 205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	13, 34, 209, 248
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	32, 157, 383
Lsp1109I	GCAGC	2 cut(s)	17, 559
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	268, 565
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	70, 334, 349, 359, 551, 569
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	453, 530
MnlI	CCTC	8 cut(s)	46, 61, 74, 86, 140, 259, 343, 494
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	113, 210, 282, 372
MslI	CAYNNNNRTG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	104, 360
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 202, 569
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	4 cut(s)	13, 34, 209, 248
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	7, 16, 574
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	113, 210, 282, 372
SatI	GCNGC	3 cut(s)	6, 15, 573
Sau3AI	GATC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	104, 360
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	453, 530
SsiI	CCGC	1 cut(s)	160
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	102, 358
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	118, 226, 298
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	398, 416
TasI	AATT	2 cut(s)	453, 530
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	113, 210, 282, 372
Tru9I	TTAA	4 cut(s)	113, 210, 282, 372
TscAI	CASTG	2 cut(s)	231, 574
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	5, 14, 572
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	261, 350
TspRI	CASTG	2 cut(s)	231, 574
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	453
XceI	RCATGY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.