Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Reverse (-)

33317585 .. 33319939

Gene Structure 2355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1229300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGCCATGGCTGCACTTCAGAGCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTCGGCCAACGCCTCTTTCCCCCAACCCTGTACTCTGTCCCGCCCAAATTAACAGCAAAGCCTTGTCTCATTGTAGTGAAGCTCAAAAGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGTTGGGGACACAGTGAAAGTCATATCTGGACATGACAAGGGTAAAACTGGAGAGGTGACAAAGATCTTTAAGCACAACAGCACCGTGATAGTCAAGGAGATAAACTTGAAGACAAAGCATATGAAGAGCAGGGAAGAGGGTGAACCAGGACAGATACTTAAGGTAGAAGGAGCCATACACAGCTCGAATGTGATGCTTTTCTCGAAAGAAAAGAATGTAGCAAGTCGGGTGGGTCATAAAATCCTGGAAAATGGACAACGAGTTCGCTACCTCATCAAAACTGGTGAAATAATAGACAATGCAGAGAACTGGAAGAAATTGAAGGAAGAAAAAAAGAAAACTGAAGAAGCCGTCACTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

193

Amino Acids

21.44

Weight (kDa)

9.89

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	72 - 103	6.9e-10	KOW motif
ribosomal_L24	PF17136	105 - 169	2.7e-19	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	2 cut(s)	104, 160
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	5, 576
AfaI	GTAC	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	322, 535
AjnI	CCWGG	2 cut(s)	358, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	3 cut(s)	27, 145, 396
AluI	AGCT	3 cut(s)	27, 145, 396
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	5, 14, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AsuHPI	GGTGA	3 cut(s)	280, 365, 509
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	17, 559
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	360, 458
BcoDI	GTCTC	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	3 cut(s)	6, 15, 573
BlsI	GCNGC	3 cut(s)	7, 16, 574
Bme1390I	CCNGG	2 cut(s)	360, 458
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	360, 458
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	9, 64
Bse1I	ACTGG	4 cut(s)	188, 265, 499, 527
BseBI	CCWGG	2 cut(s)	360, 458
BseDI	CCNNGG	2 cut(s)	9, 64
BseNI	ACTGG	4 cut(s)	188, 265, 499, 527
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	17, 559
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	86, 233
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	86, 233
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	104, 160
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	188, 265, 499, 527
BssECI	CCNNGG	2 cut(s)	9, 64
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	360, 458
Bst4CI	ACNGT	2 cut(s)	226, 298
Bst6I	CTCTTC	2 cut(s)	332, 342
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 569
BstNI	CCWGG	2 cut(s)	360, 458
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	358, 456
BstV1I	GCAGC	2 cut(s)	17, 559
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	231, 567
Cac8I	GCNNGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	4 cut(s)	10, 31, 206, 245
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	332, 342
EarI	CTCTTC	2 cut(s)	332, 342
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	5, 576
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	358, 456
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 34, 209, 248
FaqI	GGGAC	2 cut(s)	86, 233
FatI	CATG	4 cut(s)	9, 30, 205, 244
FauI	CCCGC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	6, 15, 573
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	6, 15, 573
GluI	GCNGC	3 cut(s)	6, 15, 573
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	13, 34, 209, 248
HphI	GGTGA	3 cut(s)	280, 365, 509
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	240, 415
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	5 cut(s)	70, 157, 194, 374, 529
HpyCH4III	ACNGT	2 cut(s)	226, 298
HpyCH4V	TGCA	5 cut(s)	17, 171, 205, 515, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 569
Hsp92II	CATG	4 cut(s)	13, 34, 209, 248
Kzo9I	GATC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	32, 157, 383
Lsp1109I	GCAGC	2 cut(s)	17, 559
LweI	GCATC	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	268, 565
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	334, 349, 359, 538, 551, 569
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	110, 530
MnlI	CCTC	7 cut(s)	46, 61, 74, 86, 259, 343, 494
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	4 cut(s)	113, 210, 282, 372
MslI	CAYNNNNRTG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	360, 458
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	360, 458
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 569
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	4 cut(s)	13, 34, 209, 248
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	268, 565
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	7, 16, 574
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	358, 456
PspGI	CCWGG	2 cut(s)	358, 456
PspN4I	GGNNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	113, 210, 282, 372
SatI	GCNGC	3 cut(s)	6, 15, 573
Sau3AI	GATC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	360, 458
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	29, 38, 147, 216, 270, 378, 398, 486
SfaNI	GCATC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	110, 530
SsiI	CCGC	2 cut(s)	104, 160
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	358, 456
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	226, 298
TaqI	TCGA	2 cut(s)	398, 416
TasI	AATT	2 cut(s)	110, 530
TatI	WGTACW	1 cut(s)	93
Tru1I	TTAA	4 cut(s)	113, 210, 282, 372
Tru9I	TTAA	4 cut(s)	113, 210, 282, 372
TscAI	CASTG	2 cut(s)	231, 574
TseFI	GTSAC	2 cut(s)	268, 565
TseI	GCWGC	3 cut(s)	5, 14, 572
Tsp45I	GTSAC	2 cut(s)	268, 565
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	231, 574
Vha464I	CTTAAG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.