Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012078

Physical Location & Seq

Genomic Coordinates Forward (+)

31425215 .. 31427593

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCAGCAGTCAATAGAATTACTAAAATGCCCCGAGTGTCCACACACGCTCTATTGTGCTCTCTTCTCTCTCTGACTGTGTGTGTGTGTGTTATCCATTCATCAGTCGCAGCCAAATTCAGTGAAGCAAGGACAATGGCAGCCATGGCTGCACTCCAGAGCTCCATGACCTCCCTTTCTCTCTCCTCTAACTCCTTCCTGGGCCAACGCCTCTCACCCCTCACTATTTATCCTGTTCCGGGTAAGTTAACATCAAAGCCTTGTCTGATTGTAGTGAAGTTGAAGCAATGGGAGCGGAAGGAATGCAAGCCAAACAGTCTTCCAATTTTACACAAAATGCATGTTAAGGTTGGAGATACAGTGAAAATCATATCCGGACATGAAAAGGGTAAAACTGGAGAGATAACAAAGATCTTTAAGCACAATAGTACTGTGATAGTTAAAGACATAAATTTGAAGACAAAGCATATGAAGAGCAGAGAAGAGGGTGAACCAGGACAGATTATTAAGGTAGAAGGAGCTATCCACAGCTCAAATGTGATGCTTTACTCGAAAGAAAAGAACATAGCAAGTCGTGTGGGTCATAAGATCCTCGAAAATGGACAACGAGTTCGCTACCTCATTAAAACTGGTGAGATAATAGACAATGCAGAGAACTGGAAGAAGCTGAAAGAAGAAAAAAAAAAAACTGAAGTAGCTGTATCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0031967 GO:0031975 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

236

Amino Acids

26.13

Weight (kDa)

9.89

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	117 - 148	2.9e-09	KOW motif
ribosomal_L24	PF17136	150 - 214	1.1e-19	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54600 AT5G54600
fragaria_vesca	FvH4_3g21600
malus_domestica	MD03G1214300.v1.1 MD11G1229300.v1.1
prunus_persica	Prupe.4G200400_v2.0.a1
pyrus_communis	pycom03g16300 pycom11g20300
rosa_chinensis	RchiOBHm_Chr5g0037061
rosa_laevigata	RLG00000033747
rosa_multiflora	Rmu_sc0009252.1_g000002 Rmu_sc0014990.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043890
rosa_rugosa	Rorug05G0160100
rosa_samantha	Rh5AG252200 Rh5BG254000 Rh5CG286600 Rh5DG262500
rosa_wichuraiana	Rw5G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	2 cut(s)	116, 451
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	283, 457
AjnI	CCWGG	2 cut(s)	198, 493
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	5 cut(s)	162, 521, 531, 667, 698
AluI	AGCT	5 cut(s)	162, 521, 531, 667, 698
Alw21I	GWGCWC	2 cut(s)	62, 164
AlwI	GGATC	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	110, 140, 149
ApoI	RAATTY	2 cut(s)	116, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	594, 626
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	207, 500, 644
AvaI	CYCGRG	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	311, 464
Bbv12I	GWGCWC	2 cut(s)	62, 164
BbvI	GCAGC	3 cut(s)	122, 136, 152
BciT130I	CCWGG	2 cut(s)	200, 495
BcnI	CCSGG	1 cut(s)	240
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	3 cut(s)	111, 141, 150
BlsI	GCNGC	3 cut(s)	112, 142, 151
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	200, 240, 495
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	200, 240, 495
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	311, 464
BpmI	CTGGAG	2 cut(s)	140, 417
BpuMI	CCSGG	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	144, 199
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	400, 634, 662
Bse3DI	GCAATG	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	200, 495
BseDI	CCNNGG	2 cut(s)	144, 199
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	400, 634, 662
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	122, 136, 152
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	62, 164
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	239, 375
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	62, 164
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	411, 588
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	374
BspPI	GGATC	1 cut(s)	583
BspQI	GCTCTTC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	400, 634, 662
BssECI	CCNNGG	2 cut(s)	144, 199
BssMI	GATC	2 cut(s)	411, 588
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	200, 495
Bst4CI	ACNGT	4 cut(s)	79, 317, 361, 433
Bst6I	CTCTTC	3 cut(s)	69, 467, 477
BstC8I	GCNNGC	2 cut(s)	6, 308
BstDSI	CCRYGG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	414, 591
BstMBI	GATC	2 cut(s)	411, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 149, 292, 704
BstNI	CCWGG	2 cut(s)	200, 495
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	3 cut(s)	198, 238, 493
BstV1I	GCAGC	3 cut(s)	122, 136, 152
BstV2I	GAAGAC	2 cut(s)	311, 464
BstX2I	RGATCY	2 cut(s)	411, 588
BstYI	RGATCY	2 cut(s)	411, 588
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	127, 366
Cac8I	GCNNGC	2 cut(s)	6, 308
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	429
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	4 cut(s)	145, 166, 341, 380
CviQI	GTAC	1 cut(s)	429
DpnI	GATC	2 cut(s)	413, 590
DpnII	GATC	2 cut(s)	411, 588
Eam1104I	CTCTTC	3 cut(s)	69, 467, 477
EarI	CTCTTC	3 cut(s)	69, 467, 477
Ecl136II	GAGCTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	198, 493
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	148, 169, 344, 383
FatI	CATG	4 cut(s)	144, 165, 340, 379
FauNDI	CATATG	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	111, 141, 150
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	111, 141, 150
GluI	GCNGC	3 cut(s)	111, 141, 150
GsuI	CTGGAG	2 cut(s)	140, 417
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	239, 375
Hin1II	CATG	4 cut(s)	148, 169, 344, 383
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	2 cut(s)	239, 375
HphI	GGTGA	3 cut(s)	207, 500, 644
Hpy166II	GTNNAC	3 cut(s)	42, 249, 491
Hpy188I	TCNGA	2 cut(s)	75, 267
Hpy188III	TCNNGA	2 cut(s)	157, 375
Hpy8I	GTNNAC	3 cut(s)	42, 249, 491
HpyAV	CCTTC	3 cut(s)	205, 292, 509
HpyCH4III	ACNGT	4 cut(s)	79, 317, 361, 433
HpyCH4V	TGCA	4 cut(s)	152, 306, 340, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 149, 292, 704
Hsp92II	CATG	4 cut(s)	148, 169, 344, 383
Kpn2I	TCCGGA	1 cut(s)	374
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	411, 588
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	3 cut(s)	167, 292, 518
Lsp1109I	GCAGC	3 cut(s)	122, 136, 152
LweI	GCATC	1 cut(s)	531
MalI	GATC	2 cut(s)	413, 590
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	2 cut(s)	411, 588
MboII	GAAGA	7 cut(s)	56, 311, 469, 484, 494, 673, 686
MflI	RGATCY	2 cut(s)	411, 588
MhlI	GDGCHC	2 cut(s)	62, 164
MluCI	AATT	4 cut(s)	18, 116, 324, 451
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	7 cut(s)	181, 196, 221, 230, 478, 602, 629
Mph1103I	ATGCAT	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	6 cut(s)	248, 345, 417, 441, 507, 624
MspI	CCGG	2 cut(s)	239, 375
MspR9I	CCNGG	3 cut(s)	200, 240, 495
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	200, 495
MwoI	GCNNNNNNNGC	4 cut(s)	146, 149, 292, 704
NciI	CCSGG	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	2 cut(s)	411, 588
NlaIII	CATG	4 cut(s)	148, 169, 344, 383
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	467
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	112, 142, 151
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	198, 493
PspGI	CCWGG	2 cut(s)	198, 493
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	411, 588
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	6 cut(s)	248, 345, 417, 441, 507, 624
SatI	GCNGC	3 cut(s)	111, 141, 150
Sau3AI	GATC	2 cut(s)	411, 588
Sau96I	GGNCC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	200, 240, 495
SduI	GDGCHC	2 cut(s)	62, 164
SetI	ASST	9 cut(s)	164, 173, 351, 513, 523, 533, 621, 669, 700
SfaNI	GCATC	1 cut(s)	531
Sse9I	AATT	4 cut(s)	18, 116, 324, 451
SsiI	CCGC	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	198, 238, 493
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	4 cut(s)	79, 317, 361, 433
TaqI	TCGA	2 cut(s)	551, 594
TasI	AATT	4 cut(s)	18, 116, 324, 451
TatI	WGTACW	1 cut(s)	428
Tru1I	TTAA	6 cut(s)	248, 345, 417, 441, 507, 624
Tru9I	TTAA	6 cut(s)	248, 345, 417, 441, 507, 624
TscAI	CASTG	2 cut(s)	127, 366
TseI	GCWGC	3 cut(s)	110, 140, 149
TspDTI	ATGAA	3 cut(s)	90, 396, 485
TspRI	CASTG	2 cut(s)	127, 366
XapI	RAATTY	2 cut(s)	116, 451
XceI	RCATGY	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.