pycom11g20300

Belongs to the universal ribosomal protein uL24 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
23218449 .. 23221156
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20300.6

Sequence Viewer

Length: 705 bp
ATGAAATTAATTCGTAACCAAACAGCGGGTCAAGACATTAGTCCCATCATACGATTTGGGCTGGGCTTTACTACTGCTTCTCTGTATTATCCATTTCTGTCACGTTCAGGGTCAAGCAACAAGAAAATGGCAGCCATGGCTGCACTTCAGAGCTCCATGACCTCTCTTTCTCTCTCCTCTAACTCCTTCCTCGGCCAACGCCTTTTTCCCCCAACTCTGTACTCTGTCCCGGCCAAGTTAACAGCAAAGCCTTGTCTCATTGTAGTGAAGCTCAAAAGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGTTGGAGACACAGTGAAAGTCATATCTGGACATGACAAGGGTAAAACTGGAGAGGTGACAAAGATCTTTAAGCACAACAGCACCGTGATAGTCAAGGAGATAAACTTGAAGACAAAGCATATGAAGAGCAGGGAAGAGGGTGAACCAGGACAGATACTTAAGGTAGAAGGAGCCATACACAGCTCGAATGTGATGCTTTTCTCAAAAGAAAAGAATGTAGCAAGTCGGGTGGGTCATAAAATCCTGGAAAATGGACAACGAGTTCGATACCTCATCAAAACTGGTGAAATAATAGACAATGCAGAGAACTGGAAGAAATTGAAGGAAGAAAAAAAGAAAACTGAAGAAGCCGTCACTGCTGCATAA

Protein Analysis

235

Amino Acids

26.06

Weight (kDa)

10.03

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012078)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 286
AciI CCGC 2 cut(s) 26, 286
AcoI YGGCCR 2 cut(s) 193, 231
AcuI CTGAAG 2 cut(s) 131, 702
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 25
AflII CTTAAG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 448, 661
AjnI CCWGG 2 cut(s) 484, 582
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 3 cut(s) 153, 271, 522
AluI AGCT 3 cut(s) 153, 271, 522
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 260, 339
AoxI GGCC 2 cut(s) 193, 231
ApeKI GCWGC 3 cut(s) 131, 140, 698
ArsI GACNNNNNNTTYG 4 cut(s) 13, 45, 585, 617
AseI ATTAAT 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 406, 491, 635
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 127, 143, 685
BccI CCATC 2 cut(s) 53, 273
BceAI ACGGC 1 cut(s) 674
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BciT130I CCWGG 2 cut(s) 486, 584
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 260, 339
BfrI CTTAAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 402
BisI GCNGC 3 cut(s) 132, 141, 699
BlsI GCNGC 3 cut(s) 133, 142, 700
Bme1390I CCNGG 3 cut(s) 230, 486, 584
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 3 cut(s) 230, 486, 584
BmsI GCATC 1 cut(s) 522
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 135, 190
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 4 cut(s) 314, 391, 625, 653
BseBI CCWGG 2 cut(s) 486, 584
BseDI CCNNGG 2 cut(s) 135, 190
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 4 cut(s) 314, 391, 625, 653
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 3 cut(s) 127, 143, 685
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 195, 233
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 27, 212
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 260, 339
BsmFI GGGAC 2 cut(s) 27, 212
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 2 cut(s) 195, 233
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 402
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 26, 286
BspANI GGCC 2 cut(s) 195, 233
BspLI GGNNCC 1 cut(s) 511
BspQI GCTCTTC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 286
BsrI ACTGG 4 cut(s) 314, 391, 625, 653
BssECI CCNNGG 2 cut(s) 135, 190
BssMI GATC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 2 cut(s) 486, 584
Bst4CI ACNGT 2 cut(s) 352, 424
Bst6I CTCTTC 2 cut(s) 458, 468
BstAFI CTTAAG 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 135
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 2 cut(s) 260, 339
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 137, 140, 695
BstNI CCWGG 2 cut(s) 486, 584
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 228, 484, 582
BstV1I GCAGC 3 cut(s) 127, 143, 685
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 2 cut(s) 195, 233
BtgI CCRYGG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 2 cut(s) 357, 693
Cac8I GCNNGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 4 cut(s) 136, 157, 332, 371
CviQI GTAC 1 cut(s) 220
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 193, 231
Eam1104I CTCTTC 2 cut(s) 458, 468
EarI CTCTTC 2 cut(s) 458, 468
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 131, 702
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 484, 582
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 4 cut(s) 139, 160, 335, 374
FaqI GGGAC 2 cut(s) 27, 212
FatI CATG 4 cut(s) 135, 156, 331, 370
FauI CCCGC 1 cut(s) 19
FauNDI CATATG 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 132, 141, 699
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 132, 141, 699
GluI GCNGC 3 cut(s) 132, 141, 699
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 2 cut(s) 195, 233
HapII CCGG 1 cut(s) 230
Hin1II CATG 4 cut(s) 139, 160, 335, 374
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HpaI GTTAAC 1 cut(s) 240
HpaII CCGG 1 cut(s) 230
HphI GGTGA 3 cut(s) 406, 491, 635
Hpy166II GTNNAC 2 cut(s) 240, 482
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 32, 366
Hpy8I GTNNAC 2 cut(s) 240, 482
HpyAV CCTTC 5 cut(s) 196, 283, 320, 500, 655
HpyCH4III ACNGT 2 cut(s) 352, 424
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 143, 297, 331, 641, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 140, 695
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 139, 160, 335, 374
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 3 cut(s) 158, 283, 509
Lsp1109I GCAGC 3 cut(s) 127, 143, 685
LweI GCATC 1 cut(s) 522
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 4 cut(s) 14, 99, 394, 691
MalI GATC 1 cut(s) 404
MbiI CCGCTC 1 cut(s) 286
MboI GATC 1 cut(s) 402
MboII GAAGA 6 cut(s) 460, 475, 485, 664, 677, 695
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 5, 9, 656
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 6 cut(s) 172, 187, 200, 385, 469, 620
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 5 cut(s) 8, 239, 336, 408, 498
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 230, 486, 584
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 2 cut(s) 486, 584
MwoI GCNNNNNNNGC 3 cut(s) 137, 140, 695
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 459
NdeII GATC 1 cut(s) 402
NlaIII CATG 4 cut(s) 139, 160, 335, 374
NlaIV GGNNCC 1 cut(s) 511
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 3 cut(s) 99, 394, 691
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 458
PctI GAATGC 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 582
PkrI GCNGC 3 cut(s) 133, 142, 700
PshAI GACNNNNGTC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 484, 582
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 484, 582
PspN4I GGNNCC 1 cut(s) 511
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 5 cut(s) 8, 239, 336, 408, 498
SatI GCNGC 3 cut(s) 132, 141, 699
Sau3AI GATC 1 cut(s) 402
ScrFI CCNGG 3 cut(s) 230, 486, 584
SduI GDGCHC 1 cut(s) 155
SetI ASST 9 cut(s) 106, 155, 164, 273, 342, 396, 504, 524, 612
SfaNI GCATC 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 3 cut(s) 5, 9, 656
SsiI CCGC 2 cut(s) 26, 286
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 228, 484, 582
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 352, 424
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 524, 604
TasI AATT 3 cut(s) 5, 9, 656
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 5 cut(s) 8, 239, 336, 408, 498
Tru9I TTAA 5 cut(s) 8, 239, 336, 408, 498
TscAI CASTG 2 cut(s) 357, 700
TseFI GTSAC 3 cut(s) 99, 394, 691
TseI GCWGC 3 cut(s) 131, 140, 698
Tsp45I GTSAC 3 cut(s) 99, 394, 691
TspDTI ATGAA 2 cut(s) 17, 476
TspRI CASTG 2 cut(s) 357, 700
Vha464I CTTAAG 1 cut(s) 497
VspI ATTAAT 1 cut(s) 8
XceI RCATGY 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.